Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0014970

Physical Location & Seq

Genomic Coordinates Forward (+)

77184944 .. 77186728

Gene Structure 1785 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG595800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGGAAGGCCACCTTGCTGTGATAAATCAAATGTGAAGAGGGGACTCTGGACTGCAGCCGAGGATGCGAAACTTCTTGCTTGCGTATCCAAACATGGAGTCGGAAATTGGACTGTGGTTCCTAAGAAAGCAGGATTGAACAGATGTGGGAAGAGCTGCAGGCTTAGGTGGACTAATTACCTCAGGCCTGACCTCAAGCATGACACCTTCACTCCTGAAGAGGAAGAGCATATTATCAACCTTCATAAGGCTATAGGAAGCAGGTGGTCTCTGATTGCAAAGCAACTACCAGGAAGAACAGATAATGATGTGAAGAACTACTGGAATACCAAGCTGAAAAAGAAGCTTTCCAAGATAGGAATCGACCCTGTAACCCACAAACCCATCTCCCAGATCCTCTCTGACTATGGAAACATCACTAGCCTTCCAAAGCACATCGGTAACCATTTTGGGCCATCCTTCAACAACAAGTTGAACATGAGCACCACATTTGTACCTGAATCAGATCCATCTTCGGGGATCACAGGACTTGCATACACCAATACGATGATGATGAACCCCATTATGGAGTCACAAGACTATTCCTCTACTAGCAGTCTTCCCTTCGGCTTTCTGTCTCAGTTTCAAGCAATGAATCAAGACGACAATGTTTCATTGCCTCCACACTTTTCGAATGAAGTAACTTCCTCTTGCTCATCATCATCTTCTCCTCCTGCTACTGATCTATTGAGCCCGCAATGTCACGCGTCTGCACAAGTTGTCACACCGTCTTCTTCTCCTTTTAATTGGAGTGAGTTCCTTCTCCATGACCCTTTTTCATCCGCAGATCAACCCAAGCAAGAAGAAGTATTTCAAGGACTGCTGGCATCACCAGCCAATCCGACAGTTGGTAATGGAATTCAGTCTCAGGCATTTGAAGTTGGATCTTCATCAGTCATTAATGGAGGTCCAAGCTTGAACAACAACAAAAATTTGGCTAATGATCAAATAGCTTCTTCTTCTTCATCTTCCTTGAGTTCATTTGTGGACACTATCTTAGGTCAAGATAGTGAGATGAGGGCAGCATTGTTCCCTGAACTTTTGGATGGATGTTTTGATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033036 GO:0033037 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051179 GO:0051252 GO:0051253 GO:0052545 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1900376 GO:1900377 GO:1901363 GO:1901700 GO:1902679 GO:1903085 GO:1903086 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

367

Amino Acids

39.95

Weight (kDa)

6.2

Isoelectric Point (pI)

57.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	3e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 77	3.7e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	69 - 110	8.9e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 119	6e-11	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28470
fragaria_vesca	FvH4_6g49630
malus_domestica	MD09G1042900.v1.1 MD17G1044400.v1.1
prunus_persica	Prupe.3G274800_v2.0.a1
pyrus_communis	pycom111g03350
rosa_chinensis	RchiOBHm_Chr2g0169671
rosa_laevigata	RLG00000021893
rosa_multiflora	Rmu_co8425035.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081900
rosa_rugosa	Rorug02G0542000
rosa_samantha	Rh2AG614300 Rh2BG626500 Rh2CG595800 Rh2DG637400
rosa_wichuraiana	Rw2G050920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	252
Acc36I	ACCTGC	1 cut(s)	252
AccII	CGCG	1 cut(s)	746
AciI	CCGC	2 cut(s)	734, 822
AclWI	GGATC	4 cut(s)	388, 500, 527, 931
AcsI	RAATTY	2 cut(s)	897, 970
AcuI	CTGAAG	1 cut(s)	237
AfaI	GTAC	1 cut(s)	495
AfiI	CCNNNNNNNGG	4 cut(s)	247, 515, 565, 887
AflIII	ACRYGT	1 cut(s)	744
AgsI	TTSAA	7 cut(s)	139, 463, 475, 626, 854, 917, 958
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	5 cut(s)	156, 334, 346, 954, 992
AluI	AGCT	5 cut(s)	156, 334, 346, 954, 992
Alw21I	GWGCWC	1 cut(s)	485
Alw26I	GTCTC	3 cut(s)	273, 621, 909
AlwI	GGATC	4 cut(s)	388, 500, 527, 931
AoxI	GGCC	3 cut(s)	8, 185, 452
ApeKI	GCWGC	3 cut(s)	56, 156, 1061
ApoI	RAATTY	2 cut(s)	897, 970
ArsI	GACNNNNNNTTYG	2 cut(s)	84, 116
AseI	ATTAAT	1 cut(s)	939
Asp700I	GAANNNNTTC	1 cut(s)	849
AspS9I	GGNCC	2 cut(s)	452, 947
AsuHPI	GGTGA	1 cut(s)	861
AsuII	TTCGAA	1 cut(s)	671
AvaII	GGWCC	1 cut(s)	947
AxyI	CCTNAGG	1 cut(s)	182
BaeI	ACNNNNGTAYC	2 cut(s)	477, 510
BanII	GRGCYC	1 cut(s)	734
BbsI	GAAGAC	2 cut(s)	590, 762
Bbv12I	GWGCWC	1 cut(s)	485
BbvI	GCAGC	3 cut(s)	68, 143, 1073
BccI	CCATC	4 cut(s)	392, 463, 517, 1079
BciT130I	CCWGG	1 cut(s)	291
BciVI	GTATCC	1 cut(s)	97
BclI	TGATCA	1 cut(s)	982
BcoDI	GTCTC	3 cut(s)	273, 621, 909
BfaI	CTAG	2 cut(s)	420, 591
BfmI	CTRYAG	3 cut(s)	54, 157, 252
BfuAI	ACCTGC	1 cut(s)	252
BfuI	GTATCC	1 cut(s)	97
BisI	GCNGC	3 cut(s)	57, 157, 1062
BlsI	GCNGC	3 cut(s)	58, 158, 1063
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	1 cut(s)	947
BmgT120I	GGNCC	2 cut(s)	452, 947
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	1 cut(s)	291
BmsI	GCATC	2 cut(s)	55, 875
BpiI	GAAGAC	2 cut(s)	590, 762
Bpu10I	CCTNAGC	1 cut(s)	164
Bpu14I	TTCGAA	1 cut(s)	671
BpuEI	CTTGAG	2 cut(s)	179, 1033
BsaBI	GATNNNNATC	2 cut(s)	359, 928
BsaI	GGTCTC	1 cut(s)	273
BsaJI	CCNNGG	1 cut(s)	60
BsaXI	ACNNNNNCTCC	2 cut(s)	196, 226
Bsc4I	CCNNNNNNNGG	4 cut(s)	247, 515, 565, 887
Bse1I	ACTGG	1 cut(s)	326
Bse21I	CCTNAGG	1 cut(s)	182
Bse3DI	GCAATG	3 cut(s)	636, 653, 743
Bse8I	GATNNNNATC	2 cut(s)	359, 928
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	5 cut(s)	70, 455, 818, 1090, 1094
BseJI	GATNNNNATC	2 cut(s)	359, 928
BseLI	CCNNNNNNNGG	4 cut(s)	247, 515, 565, 887
BseMI	GCAATG	3 cut(s)	636, 653, 743
BseMII	CTCAG	3 cut(s)	196, 632, 920
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	1 cut(s)	699
BseXI	GCAGC	3 cut(s)	68, 143, 1073
BsgI	GTGCAG	1 cut(s)	735
Bsh1236I	CGCG	1 cut(s)	746
BshFI	GGCC	3 cut(s)	10, 187, 454
BsiHKAI	GWGCWC	1 cut(s)	485
BslFI	GGGAC	1 cut(s)	57
BslI	CCNNNNNNNGG	4 cut(s)	247, 515, 565, 887
BsmAI	GTCTC	3 cut(s)	273, 621, 909
BsmFI	GGGAC	1 cut(s)	57
BsnI	GGCC	3 cut(s)	10, 187, 454
Bso31I	GGTCTC	1 cut(s)	273
Bsp119I	TTCGAA	1 cut(s)	671
Bsp1286I	GDGCHC	2 cut(s)	485, 734
Bsp143I	GATC	7 cut(s)	393, 505, 519, 721, 826, 923, 982
BspACI	CCGC	2 cut(s)	734, 822
BspANI	GGCC	3 cut(s)	10, 187, 454
BspCNI	CTCAG	3 cut(s)	195, 631, 919
BspFNI	CGCG	1 cut(s)	746
BspLI	GGNNCC	1 cut(s)	120
BspMAI	CTGCAG	2 cut(s)	58, 161
BspMI	ACCTGC	1 cut(s)	252
BspPI	GGATC	4 cut(s)	388, 500, 527, 931
BspQI	GCTCTTC	2 cut(s)	146, 219
BspT104I	TTCGAA	1 cut(s)	671
BspTNI	GGTCTC	1 cut(s)	273
BsrDI	GCAATG	3 cut(s)	636, 653, 743
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	7 cut(s)	393, 505, 519, 721, 826, 923, 982
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	3 cut(s)	115, 768, 886
Bst6I	CTCTTC	4 cut(s)	32, 146, 213, 219
BstBI	TTCGAA	1 cut(s)	671
BstC8I	GCNNGC	4 cut(s)	82, 161, 734, 864
BstDEI	CTNAG	6 cut(s)	123, 164, 182, 618, 906, 1036
BstEII	GGTNACC	1 cut(s)	440
BstENI	CCTNNNNNAGG	1 cut(s)	245
BstF5I	GGATG	5 cut(s)	70, 455, 818, 1090, 1094
BstFNI	CGCG	1 cut(s)	746
BstKTI	GATC	7 cut(s)	396, 508, 522, 724, 829, 926, 985
BstMAI	GTCTC	3 cut(s)	273, 621, 909
BstMBI	GATC	7 cut(s)	393, 505, 519, 721, 826, 923, 982
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 872
BstNI	CCWGG	1 cut(s)	291
BstPI	GGTNACC	1 cut(s)	440
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	3 cut(s)	54, 157, 252
BstUI	CGCG	1 cut(s)	746
BstV1I	GCAGC	3 cut(s)	68, 143, 1073
BstV2I	GAAGAC	2 cut(s)	590, 762
BstX2I	RGATCY	3 cut(s)	393, 505, 923
BstYI	RGATCY	3 cut(s)	393, 505, 923
Bsu36I	CCTNAGG	1 cut(s)	182
BsuI	GTATCC	1 cut(s)	97
BsuRI	GGCC	3 cut(s)	10, 187, 454
BtsCI	GGATG	5 cut(s)	70, 455, 818, 1090, 1094
BveI	ACCTGC	1 cut(s)	252
Cac8I	GCNNGC	4 cut(s)	82, 161, 734, 864
Cfr13I	GGNCC	2 cut(s)	452, 947
CseI	GACGC	1 cut(s)	735
Csp6I	GTAC	1 cut(s)	494
CviAII	CATG	4 cut(s)	95, 200, 478, 806
CviQI	GTAC	1 cut(s)	494
DdeI	CTNAG	6 cut(s)	123, 164, 182, 618, 906, 1036
DpnI	GATC	7 cut(s)	395, 507, 521, 723, 828, 925, 984
DpnII	GATC	7 cut(s)	393, 505, 519, 721, 826, 923, 982
Eam1104I	CTCTTC	4 cut(s)	32, 146, 213, 219
EarI	CTCTTC	4 cut(s)	32, 146, 213, 219
Eco147I	AGGCCT	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	734
Eco31I	GGTCTC	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	947
Eco57I	CTGAAG	1 cut(s)	237
Eco81I	CCTNAGG	1 cut(s)	182
Eco91I	GGTNACC	1 cut(s)	440
EcoNI	CCTNNNNNAGG	1 cut(s)	245
EcoO65I	GGTNACC	1 cut(s)	440
EcoRI	GAATTC	1 cut(s)	897
EcoRII	CCWGG	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	734
FaeI	CATG	4 cut(s)	98, 203, 481, 809
FalI	AAGNNNNNCTT	1 cut(s)	30
FaqI	GGGAC	1 cut(s)	57
FatI	CATG	4 cut(s)	94, 199, 477, 805
FauI	CCCGC	1 cut(s)	741
FbaI	TGATCA	1 cut(s)	982
Fnu4HI	GCNGC	3 cut(s)	57, 157, 1062
FokI	GGATG	4 cut(s)	77, 442, 805, 1097
FriOI	GRGCYC	1 cut(s)	734
Fsp4HI	GCNGC	3 cut(s)	57, 157, 1062
FspBI	CTAG	2 cut(s)	420, 591
GluI	GCNGC	3 cut(s)	57, 157, 1062
HaeIII	GGCC	3 cut(s)	10, 187, 454
HgaI	GACGC	1 cut(s)	735
Hin1II	CATG	4 cut(s)	98, 203, 481, 809
HindIII	AAGCTT	2 cut(s)	344, 952
HinfI	GANTC	6 cut(s)	45, 99, 360, 500, 569, 634
HphI	GGTGA	1 cut(s)	861
Hpy166II	GTNNAC	2 cut(s)	171, 1027
Hpy188I	TCNGA	5 cut(s)	104, 273, 403, 505, 882
Hpy188III	TCNNGA	4 cut(s)	49, 215, 638, 1043
Hpy8I	GTNNAC	2 cut(s)	171, 1027
HpyAV	CCTTC	6 cut(s)	217, 251, 434, 469, 613, 809
HpyCH4III	ACNGT	3 cut(s)	115, 768, 886
HpyCH4V	TGCA	5 cut(s)	56, 159, 278, 533, 752
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 872
HpyF3I	CTNAG	6 cut(s)	123, 164, 182, 618, 906, 1036
Hsp92II	CATG	4 cut(s)	98, 203, 481, 809
Ksp22I	TGATCA	1 cut(s)	982
Kzo9I	GATC	7 cut(s)	393, 505, 519, 721, 826, 923, 982
LguI	GCTCTTC	2 cut(s)	146, 219
Lsp1109I	GCAGC	3 cut(s)	68, 143, 1073
LweI	GCATC	2 cut(s)	55, 875
MaeI	CTAG	2 cut(s)	420, 591
MaeIII	GTNAC	6 cut(s)	370, 440, 570, 679, 740, 760
MalI	GATC	7 cut(s)	395, 507, 521, 723, 828, 925, 984
MboI	GATC	7 cut(s)	393, 505, 519, 721, 826, 923, 982
MflI	RGATCY	3 cut(s)	393, 505, 923
MhlI	GDGCHC	2 cut(s)	485, 734
MluCI	AATT	5 cut(s)	106, 175, 784, 897, 970
MluI	ACGCGT	1 cut(s)	744
MlyI	GAGTC	3 cut(s)	39, 108, 578
MmeI	TCCRAC	3 cut(s)	82, 901, 905
MroXI	GAANNNNTTC	1 cut(s)	849
MseI	TTAA	2 cut(s)	783, 939
MspR9I	CCNGG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	291
MvnI	CGCG	1 cut(s)	746
MwoI	GCNNNNNNNGC	2 cut(s)	65, 872
NdeII	GATC	7 cut(s)	393, 505, 519, 721, 826, 923, 982
NlaIII	CATG	4 cut(s)	98, 203, 481, 809
NlaIV	GGNNCC	1 cut(s)	120
NmeAIII	GCCGAG	1 cut(s)	85
NmuCI	GTSAC	3 cut(s)	570, 740, 760
NspV	TTCGAA	1 cut(s)	671
PaqCI	CACCTGC	1 cut(s)	252
PceI	AGGCCT	1 cut(s)	187
PciSI	GCTCTTC	2 cut(s)	146, 219
PdmI	GAANNNNTTC	1 cut(s)	849
PfeI	GAWTC	3 cut(s)	360, 500, 634
PkrI	GCNGC	3 cut(s)	58, 158, 1063
PleI	GAGTC	3 cut(s)	39, 107, 577
PpsI	GAGTC	3 cut(s)	39, 107, 577
PshBI	ATTAAT	1 cut(s)	939
Psp6I	CCWGG	1 cut(s)	289
PspEI	GGTNACC	1 cut(s)	440
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	2 cut(s)	452, 947
PstI	CTGCAG	2 cut(s)	58, 161
PsuI	RGATCY	3 cut(s)	393, 505, 923
RsaI	GTAC	1 cut(s)	495
RsaNI	GTAC	1 cut(s)	494
SapI	GCTCTTC	2 cut(s)	146, 219
SaqAI	TTAA	2 cut(s)	783, 939
SatI	GCNGC	3 cut(s)	57, 157, 1062
Sau3AI	GATC	7 cut(s)	393, 505, 519, 721, 826, 923, 982
Sau96I	GGNCC	2 cut(s)	452, 947
SchI	GAGTC	3 cut(s)	39, 108, 578
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	2 cut(s)	485, 734
SfaNI	GCATC	2 cut(s)	55, 875
SfcI	CTRYAG	3 cut(s)	54, 157, 252
SfuI	TTCGAA	1 cut(s)	671
SinI	GGWCC	1 cut(s)	947
SmlI	CTYRAG	2 cut(s)	194, 1012
SmoI	CTYRAG	2 cut(s)	194, 1012
Sse9I	AATT	5 cut(s)	106, 175, 784, 897, 970
SseBI	AGGCCT	1 cut(s)	187
SsiI	CCGC	2 cut(s)	734, 822
SspMI	CTAG	2 cut(s)	420, 591
StuI	AGGCCT	1 cut(s)	187
StyD4I	CCNGG	1 cut(s)	289
TaaI	ACNGT	3 cut(s)	115, 768, 886
TaqI	TCGA	2 cut(s)	363, 671
TasI	AATT	5 cut(s)	106, 175, 784, 897, 970
TfiI	GAWTC	3 cut(s)	360, 500, 634
Tru1I	TTAA	2 cut(s)	783, 939
Tru9I	TTAA	2 cut(s)	783, 939
TseFI	GTSAC	3 cut(s)	570, 740, 760
TseI	GCWGC	3 cut(s)	56, 156, 1061
Tsp45I	GTSAC	3 cut(s)	570, 740, 760
TspDTI	ATGAA	9 cut(s)	233, 569, 642, 647, 690, 807, 918, 993, 1008
VpaK11BI	GGWCC	1 cut(s)	947
VspI	ATTAAT	1 cut(s)	939
XagI	CCTNNNNNAGG	1 cut(s)	245
XapI	RAATTY	2 cut(s)	897, 970
XmnI	GAANNNNTTC	1 cut(s)	849
XspI	CTAG	2 cut(s)	420, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.