Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0014970

Physical Location & Seq

Genomic Coordinates Forward (+)

83977620 .. 83978246

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG614300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAGCACCACATTTGTACCTGAATCAGATCCATCTTCGGGGATCACAGGACTTGCATACACCAATATGATGATGATGAACCCCATTATGGAGTCACAAGACTATTCCTCTACTAGCACTCTTCCCTTCGGCTTTCTGTCTCAGTTTCAAGCAATGAATCAAGACGACAATGTTTCATTGCCTCCACACTTTTCGAATGAAGTAACTTCCTCTTGCTCATCATCATCTTCTCCTCCTGCTACTGATCTATTGAGCCCGCAATGTCACGCGTCTGCACAAGTTGTCACACCGTCTTCTTCTCCTTTTAATTGGAGTGAGTTCCTTCTCCATGACCCTTTTTCATCCGCAGATCAACCCAAGCAAGAAGTAGTATTTCAAGGACTGCTGGCATCACCAGCCAATCCGACAGTTGGTAATGGAATTCAGTCTCTGGCATTTGAAGTTGGATCTTCATCAGTCATTAATGGAGGTCCAAGCTTGAACAACAACAAAAATTTGGCTAATGATCACATAGCTTCTTCTTCTTCATCTTCCTTGAGTTCATTTGTGGACACTATCTTAGGTCAAGATAGTGAGATGAGGGCAGCATTGTTCCCTGAACTTTTGGATGGATGTTTTGATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033036 GO:0033037 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051179 GO:0051252 GO:0051253 GO:0052545 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1900376 GO:1900377 GO:1901363 GO:1901700 GO:1902679 GO:1903085 GO:1903086 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

208

Amino Acids

22.04

Weight (kDa)

4.05

Isoelectric Point (pI)

65.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28470
fragaria_vesca	FvH4_6g49630
malus_domestica	MD09G1042900.v1.1 MD17G1044400.v1.1
prunus_persica	Prupe.3G274800_v2.0.a1
pyrus_communis	pycom111g03350
rosa_chinensis	RchiOBHm_Chr2g0169671
rosa_laevigata	RLG00000021893
rosa_multiflora	Rmu_co8425035.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081900
rosa_rugosa	Rorug02G0542000
rosa_samantha	Rh2AG614300 Rh2BG626500 Rh2CG595800 Rh2DG637400
rosa_wichuraiana	Rw2G050920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	269
AciI	CCGC	2 cut(s)	257, 345
AclWI	GGATC	3 cut(s)	23, 50, 454
AcsI	RAATTY	2 cut(s)	420, 493
AfaI	GTAC	1 cut(s)	18
AfiI	CCNNNNNNNGG	3 cut(s)	38, 88, 410
AflIII	ACRYGT	1 cut(s)	267
AgsI	TTSAA	4 cut(s)	149, 377, 440, 481
AluBI	AGCT	2 cut(s)	477, 515
AluI	AGCT	2 cut(s)	477, 515
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	2 cut(s)	144, 432
AlwI	GGATC	3 cut(s)	23, 50, 454
AlwNI	CAGNNNCTG	1 cut(s)	430
ApeKI	GCWGC	1 cut(s)	584
ApoI	RAATTY	2 cut(s)	420, 493
AseI	ATTAAT	1 cut(s)	462
AspS9I	GGNCC	1 cut(s)	470
AsuHPI	GGTGA	1 cut(s)	384
AsuII	TTCGAA	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	470
BaeI	ACNNNNGTAYC	1 cut(s)	33
BanII	GRGCYC	1 cut(s)	257
BbsI	GAAGAC	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	596
BccI	CCATC	2 cut(s)	40, 602
BclI	TGATCA	1 cut(s)	505
BcoDI	GTCTC	2 cut(s)	144, 432
BfaI	CTAG	1 cut(s)	114
BisI	GCNGC	1 cut(s)	585
BlsI	GCNGC	1 cut(s)	586
Bme18I	GGWCC	1 cut(s)	470
BmgT120I	GGNCC	1 cut(s)	470
BmsI	GCATC	1 cut(s)	398
BpiI	GAAGAC	1 cut(s)	285
Bpu14I	TTCGAA	1 cut(s)	194
BpuEI	CTTGAG	1 cut(s)	556
BsaBI	GATNNNNATC	1 cut(s)	451
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 88, 410
Bse3DI	GCAATG	3 cut(s)	159, 176, 266
Bse8I	GATNNNNATC	1 cut(s)	451
BseGI	GGATG	3 cut(s)	341, 613, 617
BseJI	GATNNNNATC	1 cut(s)	451
BseLI	CCNNNNNNNGG	3 cut(s)	38, 88, 410
BseMI	GCAATG	3 cut(s)	159, 176, 266
BseMII	CTCAG	1 cut(s)	155
BseRI	GAGGAG	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	596
BsgI	GTGCAG	1 cut(s)	258
Bsh1236I	CGCG	1 cut(s)	269
BsiHKAI	GWGCWC	1 cut(s)	8
BslI	CCNNNNNNNGG	3 cut(s)	38, 88, 410
BsmAI	GTCTC	2 cut(s)	144, 432
Bsp119I	TTCGAA	1 cut(s)	194
Bsp1286I	GDGCHC	2 cut(s)	8, 257
Bsp143I	GATC	6 cut(s)	28, 42, 244, 349, 446, 505
BspACI	CCGC	2 cut(s)	257, 345
BspCNI	CTCAG	1 cut(s)	154
BspFNI	CGCG	1 cut(s)	269
BspPI	GGATC	3 cut(s)	23, 50, 454
BspT104I	TTCGAA	1 cut(s)	194
BsrDI	GCAATG	3 cut(s)	159, 176, 266
BssMI	GATC	6 cut(s)	28, 42, 244, 349, 446, 505
Bst4CI	ACNGT	2 cut(s)	291, 409
Bst6I	CTCTTC	1 cut(s)	126
BstBI	TTCGAA	1 cut(s)	194
BstC8I	GCNNGC	2 cut(s)	257, 387
BstDEI	CTNAG	2 cut(s)	141, 559
BstF5I	GGATG	3 cut(s)	341, 613, 617
BstFNI	CGCG	1 cut(s)	269
BstKTI	GATC	6 cut(s)	31, 45, 247, 352, 449, 508
BstMAI	GTCTC	2 cut(s)	144, 432
BstMBI	GATC	6 cut(s)	28, 42, 244, 349, 446, 505
BstMWI	GCNNNNNNNGC	1 cut(s)	395
BstUI	CGCG	1 cut(s)	269
BstV1I	GCAGC	1 cut(s)	596
BstV2I	GAAGAC	1 cut(s)	285
BstX2I	RGATCY	2 cut(s)	28, 446
BstYI	RGATCY	2 cut(s)	28, 446
BtsCI	GGATG	3 cut(s)	341, 613, 617
Cac8I	GCNNGC	2 cut(s)	257, 387
CaiI	CAGNNNCTG	1 cut(s)	430
Cfr13I	GGNCC	1 cut(s)	470
CseI	GACGC	1 cut(s)	258
Csp6I	GTAC	1 cut(s)	17
CviAII	CATG	1 cut(s)	329
CviJI	RGCY	6 cut(s)	132, 255, 398, 477, 500, 515
CviKI_1	RGCY	6 cut(s)	132, 255, 398, 477, 500, 515
CviQI	GTAC	1 cut(s)	17
DdeI	CTNAG	2 cut(s)	141, 559
DpnI	GATC	6 cut(s)	30, 44, 246, 351, 448, 507
DpnII	GATC	6 cut(s)	28, 42, 244, 349, 446, 505
Eam1104I	CTCTTC	1 cut(s)	126
EarI	CTCTTC	1 cut(s)	126
Eco24I	GRGCYC	1 cut(s)	257
Eco47I	GGWCC	1 cut(s)	470
EcoRI	GAATTC	1 cut(s)	420
EcoT38I	GRGCYC	1 cut(s)	257
FaeI	CATG	1 cut(s)	332
FaiI	YATR	5 cut(s)	58, 68, 89, 330, 512
FatI	CATG	1 cut(s)	328
FauI	CCCGC	1 cut(s)	264
FbaI	TGATCA	1 cut(s)	505
Fnu4HI	GCNGC	1 cut(s)	585
FokI	GGATG	2 cut(s)	328, 620
FriOI	GRGCYC	1 cut(s)	257
Fsp4HI	GCNGC	1 cut(s)	585
FspBI	CTAG	1 cut(s)	114
GluI	GCNGC	1 cut(s)	585
HgaI	GACGC	1 cut(s)	258
Hin1II	CATG	1 cut(s)	332
HindIII	AAGCTT	1 cut(s)	475
HinfI	GANTC	3 cut(s)	23, 92, 157
HphI	GGTGA	1 cut(s)	384
Hpy166II	GTNNAC	1 cut(s)	550
Hpy188I	TCNGA	2 cut(s)	28, 405
Hpy188III	TCNNGA	2 cut(s)	161, 566
Hpy8I	GTNNAC	1 cut(s)	550
HpyAV	CCTTC	2 cut(s)	136, 332
HpyCH4III	ACNGT	2 cut(s)	291, 409
HpyCH4V	TGCA	2 cut(s)	56, 275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	395
HpyF3I	CTNAG	2 cut(s)	141, 559
Hsp92II	CATG	1 cut(s)	332
Ksp22I	TGATCA	1 cut(s)	505
Kzo9I	GATC	6 cut(s)	28, 42, 244, 349, 446, 505
LpnPI	CCDG	7 cut(s)	33, 33, 249, 371, 408, 416, 609
Lsp1109I	GCAGC	1 cut(s)	596
LweI	GCATC	1 cut(s)	398
MaeI	CTAG	1 cut(s)	114
MaeIII	GTNAC	4 cut(s)	93, 202, 263, 283
MalI	GATC	6 cut(s)	30, 44, 246, 351, 448, 507
MboI	GATC	6 cut(s)	28, 42, 244, 349, 446, 505
MflI	RGATCY	2 cut(s)	28, 446
MhlI	GDGCHC	2 cut(s)	8, 257
MluCI	AATT	3 cut(s)	307, 420, 493
MluI	ACGCGT	1 cut(s)	267
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	2 cut(s)	424, 428
MnlI	CCTC	6 cut(s)	118, 192, 220, 243, 461, 573
MseI	TTAA	2 cut(s)	306, 462
MslI	CAYNNNNRTG	1 cut(s)	65
MvnI	CGCG	1 cut(s)	269
MwoI	GCNNNNNNNGC	1 cut(s)	395
NdeII	GATC	6 cut(s)	28, 42, 244, 349, 446, 505
NlaIII	CATG	1 cut(s)	332
NmuCI	GTSAC	3 cut(s)	93, 263, 283
NspV	TTCGAA	1 cut(s)	194
PfeI	GAWTC	2 cut(s)	23, 157
PkrI	GCNGC	1 cut(s)	586
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
PshBI	ATTAAT	1 cut(s)	462
PspPI	GGNCC	1 cut(s)	470
PstNI	CAGNNNCTG	1 cut(s)	430
PsuI	RGATCY	2 cut(s)	28, 446
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
RseI	CAYNNNNRTG	1 cut(s)	65
SaqAI	TTAA	2 cut(s)	306, 462
SatI	GCNGC	1 cut(s)	585
Sau3AI	GATC	6 cut(s)	28, 42, 244, 349, 446, 505
Sau96I	GGNCC	1 cut(s)	470
SchI	GAGTC	1 cut(s)	101
SduI	GDGCHC	2 cut(s)	8, 257
SetI	ASST	5 cut(s)	22, 472, 479, 517, 565
SfaNI	GCATC	1 cut(s)	398
SfuI	TTCGAA	1 cut(s)	194
SinI	GGWCC	1 cut(s)	470
SmiMI	CAYNNNNRTG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	535
SmoI	CTYRAG	1 cut(s)	535
Sse9I	AATT	3 cut(s)	307, 420, 493
SsiI	CCGC	2 cut(s)	257, 345
SspMI	CTAG	1 cut(s)	114
TaaI	ACNGT	2 cut(s)	291, 409
TaqI	TCGA	1 cut(s)	194
TasI	AATT	3 cut(s)	307, 420, 493
TfiI	GAWTC	2 cut(s)	23, 157
Tru1I	TTAA	2 cut(s)	306, 462
Tru9I	TTAA	2 cut(s)	306, 462
TseFI	GTSAC	3 cut(s)	93, 263, 283
TseI	GCWGC	1 cut(s)	584
Tsp45I	GTSAC	3 cut(s)	93, 263, 283
TspDTI	ATGAA	8 cut(s)	92, 165, 170, 213, 330, 441, 516, 531
VpaK11BI	GGWCC	1 cut(s)	470
VspI	ATTAAT	1 cut(s)	462
XapI	RAATTY	2 cut(s)	420, 493
XspI	CTAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.