Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0014970

Physical Location & Seq

Genomic Coordinates Reverse (-)

2031206 .. 2031925

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g03350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGGAATTGACCCTGTCACCCACAAACCCTACTCTCAGATCCTCTCCGACTACGGAAACATCAGCGGCCTCCCAAGCACCGCCGGGAATCATCCGTTCTCGTCCTTTTTCAAGCAATCGAAAAGCACATTCGCACCCGAATTAAACTCTTCCTGCATCACAGGAACCCCATACACCAATGTGATCATGAACCCTAATATTAATGGACAAGGATCAGAGTACAATTCCTCTGCTAGCACACTTGGCTTTTTGGCTCATCGGTTTCAAGAGAGAGTGCAAATTGAGCAGCCACACATTTTAAATGAAGTAACCTCATCTTGCTCCTCATCATCCTCTCCTCGTGCCACAGACCATCAATTAATTTCGCAACCAACTTACACGTGCCGGGAATCACACGAGGCTCAGATTACGCTGTCCTCTTCTTCGTTTAATCGGAGGGAGTATCTTCTGCACGATCCTTTTACATCAGCTGATCATTTGAAGCAAGAACAAGATTTGCATGGGGTGATGATGTCATCTTCTGAAAACCCTACACTTGGAGTGCAAGGCAGCTCCGATGCAATTGAGGGATGTGATTTTGTAGGTCAAAGAAGCTATGGCTTGCCTGATCACCAAACTTCTTCGACTTCCATGTGTTCGTTTGTGGAGACTATCTTGGATCAAGACAGTGAGATGCAGGCAGCTTTTCCTCAACTTTTGGATGCTTCTTTCGATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033036 GO:0033037 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051179 GO:0051252 GO:0051253 GO:0052545 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1900376 GO:1900377 GO:1901363 GO:1901700 GO:1902679 GO:1903085 GO:1903086 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

240

Amino Acids

26.19

Weight (kDa)

4.83

Isoelectric Point (pI)

61.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28470
fragaria_vesca	FvH4_6g49630
malus_domestica	MD09G1042900.v1.1 MD17G1044400.v1.1
prunus_persica	Prupe.3G274800_v2.0.a1
pyrus_communis	pycom111g03350
rosa_chinensis	RchiOBHm_Chr2g0169671
rosa_laevigata	RLG00000021893
rosa_multiflora	Rmu_co8425035.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081900
rosa_rugosa	Rorug02G0542000
rosa_samantha	Rh2AG614300 Rh2BG626500 Rh2CG595800 Rh2DG637400
rosa_wichuraiana	Rw2G050920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	66, 81
AclWI	GGATC	4 cut(s)	34, 220, 449, 666
AcvI	CACGTG	1 cut(s)	381
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	536
AflIII	ACRYGT	1 cut(s)	378
AgsI	TTSAA	3 cut(s)	112, 266, 481
AleI	CACNNNNGTG	1 cut(s)	179
AluBI	AGCT	4 cut(s)	470, 552, 594, 683
AluI	AGCT	4 cut(s)	470, 552, 594, 683
Alw26I	GTCTC	1 cut(s)	641
AlwI	GGATC	4 cut(s)	34, 220, 449, 666
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	3 cut(s)	286, 549, 680
AseI	ATTAAT	2 cut(s)	201, 359
AsuC2I	CCSGG	2 cut(s)	85, 386
AsuHPI	GGTGA	3 cut(s)	10, 517, 602
AsuNHI	GCTAGC	1 cut(s)	233
BauI	CACGAG	2 cut(s)	339, 395
BbrPI	CACGTG	1 cut(s)	381
BbvI	GCAGC	3 cut(s)	298, 561, 692
BccI	CCATC	1 cut(s)	360
BclI	TGATCA	3 cut(s)	183, 472, 607
BcnI	CCSGG	2 cut(s)	85, 386
BcoDI	GTCTC	1 cut(s)	641
BfaI	CTAG	1 cut(s)	234
BisI	GCNGC	4 cut(s)	67, 287, 550, 681
BlsI	GCNGC	4 cut(s)	68, 288, 551, 682
Bme1390I	CCNGG	2 cut(s)	85, 386
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	2 cut(s)	85, 386
BmsI	GCATC	4 cut(s)	165, 547, 663, 691
BmtI	GCTAGC	1 cut(s)	237
BpuMI	CCSGG	2 cut(s)	85, 386
BsaAI	YACGTR	1 cut(s)	381
Bsc4I	CCNNNNNNNGG	1 cut(s)	536
BseGI	GGATG	4 cut(s)	91, 329, 575, 706
BseLI	CCNNNNNNNGG	1 cut(s)	536
BseMII	CTCAG	2 cut(s)	50, 416
BseRI	GAGGAG	2 cut(s)	313, 327
BseXI	GCAGC	3 cut(s)	298, 561, 692
BsgI	GTGCAG	1 cut(s)	434
BshFI	GGCC	1 cut(s)	69
BsiSI	CCGG	2 cut(s)	84, 385
BslI	CCNNNNNNNGG	1 cut(s)	536
BsmAI	GTCTC	1 cut(s)	641
BsnI	GGCC	1 cut(s)	69
Bsp143I	GATC	7 cut(s)	39, 183, 212, 454, 472, 607, 658
BspACI	CCGC	2 cut(s)	66, 81
BspANI	GGCC	1 cut(s)	69
BspCNI	CTCAG	2 cut(s)	49, 415
BspHI	TCATGA	1 cut(s)	186
BspLI	GGNNCC	1 cut(s)	166
BspOI	GCTAGC	1 cut(s)	237
BspPI	GGATC	4 cut(s)	34, 220, 449, 666
BssMI	GATC	7 cut(s)	39, 183, 212, 454, 472, 607, 658
BssSI	CACGAG	2 cut(s)	339, 395
Bst2BI	CACGAG	2 cut(s)	339, 395
Bst4CI	ACNGT	1 cut(s)	668
Bst6I	CTCTTC	2 cut(s)	154, 424
BstBAI	YACGTR	1 cut(s)	381
BstC8I	GCNNGC	3 cut(s)	235, 602, 678
BstDEI	CTNAG	2 cut(s)	36, 402
BstF5I	GGATG	4 cut(s)	91, 329, 575, 706
BstKTI	GATC	7 cut(s)	42, 186, 215, 457, 475, 610, 661
BstMAI	GTCTC	1 cut(s)	641
BstMBI	GATC	7 cut(s)	39, 183, 212, 454, 472, 607, 658
BstMWI	GCNNNNNNNGC	3 cut(s)	75, 243, 283
BstSCI	CCNGG	2 cut(s)	83, 384
BstV1I	GCAGC	3 cut(s)	298, 561, 692
BstX2I	RGATCY	1 cut(s)	39
BstYI	RGATCY	1 cut(s)	39
BsuRI	GGCC	1 cut(s)	69
BtsCI	GGATG	4 cut(s)	91, 329, 575, 706
BtsIMutI	CAGTG	1 cut(s)	673
Cac8I	GCNNGC	3 cut(s)	235, 602, 678
CciI	TCATGA	1 cut(s)	186
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	3 cut(s)	187, 500, 631
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	2 cut(s)	36, 402
DpnI	GATC	7 cut(s)	41, 185, 214, 456, 474, 609, 660
DpnII	GATC	7 cut(s)	39, 183, 212, 454, 472, 607, 658
DraI	TTTAAA	1 cut(s)	300
Eam1104I	CTCTTC	2 cut(s)	154, 424
EarI	CTCTTC	2 cut(s)	154, 424
Eco72I	CACGTG	1 cut(s)	381
FaeI	CATG	3 cut(s)	190, 503, 634
FaiI	YATR	5 cut(s)	172, 188, 501, 597, 632
FatI	CATG	3 cut(s)	186, 499, 630
FbaI	TGATCA	3 cut(s)	183, 472, 607
Fnu4HI	GCNGC	4 cut(s)	67, 287, 550, 681
FokI	GGATG	4 cut(s)	78, 316, 582, 713
Fsp4HI	GCNGC	4 cut(s)	67, 287, 550, 681
FspBI	CTAG	1 cut(s)	234
GluI	GCNGC	4 cut(s)	67, 287, 550, 681
HaeIII	GGCC	1 cut(s)	69
HapII	CCGG	2 cut(s)	84, 385
Hin1II	CATG	3 cut(s)	190, 503, 634
HinfI	GANTC	2 cut(s)	88, 389
HpaII	CCGG	2 cut(s)	84, 385
HphI	GGTGA	3 cut(s)	10, 517, 602
Hpy188I	TCNGA	7 cut(s)	39, 49, 217, 405, 435, 523, 556
Hpy188III	TCNNGA	3 cut(s)	187, 266, 662
HpyCH4III	ACNGT	1 cut(s)	668
HpyCH4IV	ACGT	1 cut(s)	380
HpyCH4V	TGCA	7 cut(s)	156, 277, 451, 499, 544, 560, 676
HpyF10VI	GCNNNNNNNGC	3 cut(s)	75, 243, 283
HpyF3I	CTNAG	2 cut(s)	36, 402
HpySE526I	ACGT	1 cut(s)	380
Hsp92II	CATG	3 cut(s)	190, 503, 634
Ksp22I	TGATCA	3 cut(s)	183, 472, 607
Kzo9I	GATC	7 cut(s)	39, 183, 212, 454, 472, 607, 658
LmnI	GCTCC	2 cut(s)	326, 557
LpnPI	CCDG	7 cut(s)	27, 97, 147, 166, 398, 618, 662
Lsp1109I	GCAGC	3 cut(s)	298, 561, 692
LweI	GCATC	4 cut(s)	165, 547, 663, 691
MaeI	CTAG	1 cut(s)	234
MaeII	ACGT	1 cut(s)	380
MaeIII	GTNAC	2 cut(s)	16, 307
MalI	GATC	7 cut(s)	41, 185, 214, 456, 474, 609, 660
MboI	GATC	7 cut(s)	39, 183, 212, 454, 472, 607, 658
MboII	GAAGA	6 cut(s)	141, 411, 414, 437, 510, 612
MfeI	CAATTG	1 cut(s)	561
MflI	RGATCY	1 cut(s)	39
MluCI	AATT	7 cut(s)	6, 140, 223, 279, 356, 360, 561
MmeI	TCCRAC	1 cut(s)	72
MseI	TTAA	6 cut(s)	143, 201, 299, 359, 429, 718
MslI	CAYNNNNRTG	1 cut(s)	179
MspA1I	CMGCKG	2 cut(s)	66, 470
MspI	CCGG	2 cut(s)	84, 385
MspR9I	CCNGG	2 cut(s)	85, 386
MunI	CAATTG	1 cut(s)	561
MwoI	GCNNNNNNNGC	3 cut(s)	75, 243, 283
NciI	CCSGG	2 cut(s)	85, 386
NdeII	GATC	7 cut(s)	39, 183, 212, 454, 472, 607, 658
NheI	GCTAGC	1 cut(s)	233
NlaIII	CATG	3 cut(s)	190, 503, 634
NlaIV	GGNNCC	1 cut(s)	166
NmuCI	GTSAC	1 cut(s)	16
OliI	CACNNNNGTG	1 cut(s)	179
PagI	TCATGA	1 cut(s)	186
PfeI	GAWTC	2 cut(s)	88, 389
PflFI	GACNNNGTC	1 cut(s)	14
PkrI	GCNGC	4 cut(s)	68, 288, 551, 682
PmaCI	CACGTG	1 cut(s)	381
PmlI	CACGTG	1 cut(s)	381
Ppu21I	YACGTR	1 cut(s)	381
PshBI	ATTAAT	2 cut(s)	201, 359
PspCI	CACGTG	1 cut(s)	381
PspN4I	GGNNCC	1 cut(s)	166
PsuI	RGATCY	1 cut(s)	39
PsyI	GACNNNGTC	1 cut(s)	14
PvuII	CAGCTG	1 cut(s)	470
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	179
SaqAI	TTAA	6 cut(s)	143, 201, 299, 359, 429, 718
SatI	GCNGC	4 cut(s)	67, 287, 550, 681
Sau3AI	GATC	7 cut(s)	39, 183, 212, 454, 472, 607, 658
ScrFI	CCNGG	2 cut(s)	85, 386
SetI	ASST	7 cut(s)	314, 383, 472, 554, 586, 596, 685
SfaNI	GCATC	4 cut(s)	165, 547, 663, 691
SmiMI	CAYNNNNRTG	1 cut(s)	179
Sse9I	AATT	7 cut(s)	6, 140, 223, 279, 356, 360, 561
SsiI	CCGC	2 cut(s)	66, 81
SspI	AATATT	1 cut(s)	199
SspMI	CTAG	1 cut(s)	234
StyD4I	CCNGG	2 cut(s)	83, 384
TaaI	ACNGT	1 cut(s)	668
TaiI	ACGT	1 cut(s)	383
TaqI	TCGA	3 cut(s)	119, 623, 711
TasI	AATT	7 cut(s)	6, 140, 223, 279, 356, 360, 561
TatI	WGTACW	1 cut(s)	219
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	2 cut(s)	88, 389
Tru1I	TTAA	6 cut(s)	143, 201, 299, 359, 429, 718
Tru9I	TTAA	6 cut(s)	143, 201, 299, 359, 429, 718
TscAI	CASTG	1 cut(s)	673
TseFI	GTSAC	1 cut(s)	16
TseI	GCWGC	3 cut(s)	286, 549, 680
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	2 cut(s)	203, 318
TspGWI	ACGGA	2 cut(s)	69, 84
TspRI	CASTG	1 cut(s)	673
Tth111I	GACNNNGTC	1 cut(s)	14
VspI	ATTAAT	2 cut(s)	201, 359
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.