Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0014970

Physical Location & Seq

Genomic Coordinates Forward (+)

86599595 .. 86601386

Gene Structure 1792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG637400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGGAAGGCCACCTTGCTGTGATAAATCAAATGTGAAGAGGGGACTCTGGACTGCAGCCGAGGATGCGAAACTTCTTGCTTGCGTATCCAAACATGGAGTCGGAAATTGGACTGTGGTTCCTAAGAAAGCAGGATTGAACAGATGTGGGAAGAGCTGCAGGCTTAGGTGGACTAATTACCTCAGGCCTGACCTCAAGCATGACACCTTCACTCCTGAAGAGGAAGAGCATATTATCAACCTTCATAAGGCTATAGGAAGCAGGTGGTCTCTGATTGCAAAGCAACTACCAGGAAGAACAGATAATGATGTGAAGAACTACTGGAATACCAAGCTGAAAAAGAAGCTTTCCAAGATAGGAATCGACCCTGTAACCCACAAACCCATCTCCCAGATCCTCTCTGACTATGGAAACATCACTAGCCTTCCAAAGCACATCGGTAACCATTTTGGGCCATCCTTCAACAACAAGTTGAACATGAGCACCACATTTGTACCTGAATCAGATCCATCTTCGGGGATCACAGGACTTGCATACACCAATATGATGATGATGAACCCCATTATGGAGTCACAAGACTATTCCTCTACTAGCACTCTTCCCTTCGGCTTTCTGTCTCAGTTTCAAGCAATGAATCAAGACGACAATGTTTCATTGCCTCCACACTTTTCGAATGAAGTAACTTCCTCTTGCTCATCATCATCTTCTCCTCCTGCTACTGATCTATTGAGCCCGCAATGTCACGCGTCTGCACAAGTTGTCACACCGTCTTCTTCTCCTTTTAATTGGAGTGAGTTCCTTCTCCATGACCCTTTTTCATCCGCAGATCAACCCAAGCAAGAAGTATTATTTCAAGGACTGCTGGCATCACCAGCCAATCCGACAGTTGGTAATGGAATTCAGTCTCAGGCATTTGAAGTTGGATCTTCATCAGTCATTAATGGAGGTCCAAGCTTGAACAACAACAAAAATTTGGCTAATGATCACATAGCTTCTTCTTCTTCATCTTCCTTGAGTTCATTTGTGGACACTATCTTAGGTCAAGATAGTGAGATGAGGGCAGCATTGTTCCCTGAACTTTTGGATGGATGTTTTGATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033036 GO:0033037 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051179 GO:0051252 GO:0051253 GO:0052545 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1900376 GO:1900377 GO:1901363 GO:1901700 GO:1902679 GO:1903085 GO:1903086 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

367

Amino Acids

39.98

Weight (kDa)

6.41

Isoelectric Point (pI)

57.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	3e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 77	3.7e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	69 - 110	8.9e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 119	6e-11	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28470
fragaria_vesca	FvH4_6g49630
malus_domestica	MD09G1042900.v1.1 MD17G1044400.v1.1
prunus_persica	Prupe.3G274800_v2.0.a1
pyrus_communis	pycom111g03350
rosa_chinensis	RchiOBHm_Chr2g0169671
rosa_laevigata	RLG00000021893
rosa_multiflora	Rmu_co8425035.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081900
rosa_rugosa	Rorug02G0542000
rosa_samantha	Rh2AG614300 Rh2BG626500 Rh2CG595800 Rh2DG637400
rosa_wichuraiana	Rw2G050920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	252
Acc36I	ACCTGC	1 cut(s)	252
AccII	CGCG	1 cut(s)	746
AciI	CCGC	2 cut(s)	734, 822
AclWI	GGATC	4 cut(s)	388, 500, 527, 931
AcsI	RAATTY	2 cut(s)	897, 970
AcuI	CTGAAG	1 cut(s)	237
AfaI	GTAC	1 cut(s)	495
AfiI	CCNNNNNNNGG	4 cut(s)	247, 515, 565, 887
AflIII	ACRYGT	1 cut(s)	744
AgsI	TTSAA	7 cut(s)	139, 463, 475, 626, 854, 917, 958
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	5 cut(s)	156, 334, 346, 954, 992
AluI	AGCT	5 cut(s)	156, 334, 346, 954, 992
Alw21I	GWGCWC	1 cut(s)	485
Alw26I	GTCTC	3 cut(s)	273, 621, 909
AlwI	GGATC	4 cut(s)	388, 500, 527, 931
AoxI	GGCC	3 cut(s)	8, 185, 452
ApeKI	GCWGC	3 cut(s)	56, 156, 1061
ApoI	RAATTY	2 cut(s)	897, 970
ArsI	GACNNNNNNTTYG	2 cut(s)	84, 116
AseI	ATTAAT	1 cut(s)	939
AspS9I	GGNCC	2 cut(s)	452, 947
AsuHPI	GGTGA	1 cut(s)	861
AsuII	TTCGAA	1 cut(s)	671
AvaII	GGWCC	1 cut(s)	947
AxyI	CCTNAGG	1 cut(s)	182
BaeI	ACNNNNGTAYC	2 cut(s)	477, 510
BanII	GRGCYC	1 cut(s)	734
BbsI	GAAGAC	1 cut(s)	762
Bbv12I	GWGCWC	1 cut(s)	485
BbvI	GCAGC	3 cut(s)	68, 143, 1073
BccI	CCATC	4 cut(s)	392, 463, 517, 1079
BciT130I	CCWGG	1 cut(s)	291
BciVI	GTATCC	1 cut(s)	97
BclI	TGATCA	1 cut(s)	982
BcoDI	GTCTC	3 cut(s)	273, 621, 909
BfaI	CTAG	2 cut(s)	420, 591
BfmI	CTRYAG	3 cut(s)	54, 157, 252
BfuAI	ACCTGC	1 cut(s)	252
BfuI	GTATCC	1 cut(s)	97
BisI	GCNGC	3 cut(s)	57, 157, 1062
BlsI	GCNGC	3 cut(s)	58, 158, 1063
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	1 cut(s)	947
BmgT120I	GGNCC	2 cut(s)	452, 947
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	1 cut(s)	291
BmsI	GCATC	2 cut(s)	55, 875
BpiI	GAAGAC	1 cut(s)	762
Bpu10I	CCTNAGC	1 cut(s)	164
Bpu14I	TTCGAA	1 cut(s)	671
BpuEI	CTTGAG	2 cut(s)	179, 1033
BsaBI	GATNNNNATC	2 cut(s)	359, 928
BsaI	GGTCTC	1 cut(s)	273
BsaJI	CCNNGG	1 cut(s)	60
BsaXI	ACNNNNNCTCC	2 cut(s)	196, 226
Bsc4I	CCNNNNNNNGG	4 cut(s)	247, 515, 565, 887
Bse1I	ACTGG	1 cut(s)	326
Bse21I	CCTNAGG	1 cut(s)	182
Bse3DI	GCAATG	3 cut(s)	636, 653, 743
Bse8I	GATNNNNATC	2 cut(s)	359, 928
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	5 cut(s)	70, 455, 818, 1090, 1094
BseJI	GATNNNNATC	2 cut(s)	359, 928
BseLI	CCNNNNNNNGG	4 cut(s)	247, 515, 565, 887
BseMI	GCAATG	3 cut(s)	636, 653, 743
BseMII	CTCAG	3 cut(s)	196, 632, 920
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	1 cut(s)	699
BseXI	GCAGC	3 cut(s)	68, 143, 1073
BsgI	GTGCAG	1 cut(s)	735
Bsh1236I	CGCG	1 cut(s)	746
BshFI	GGCC	3 cut(s)	10, 187, 454
BsiHKAI	GWGCWC	1 cut(s)	485
BslFI	GGGAC	1 cut(s)	57
BslI	CCNNNNNNNGG	4 cut(s)	247, 515, 565, 887
BsmAI	GTCTC	3 cut(s)	273, 621, 909
BsmFI	GGGAC	1 cut(s)	57
BsnI	GGCC	3 cut(s)	10, 187, 454
Bso31I	GGTCTC	1 cut(s)	273
Bsp119I	TTCGAA	1 cut(s)	671
Bsp1286I	GDGCHC	2 cut(s)	485, 734
Bsp143I	GATC	7 cut(s)	393, 505, 519, 721, 826, 923, 982
BspACI	CCGC	2 cut(s)	734, 822
BspANI	GGCC	3 cut(s)	10, 187, 454
BspCNI	CTCAG	3 cut(s)	195, 631, 919
BspFNI	CGCG	1 cut(s)	746
BspLI	GGNNCC	1 cut(s)	120
BspMAI	CTGCAG	2 cut(s)	58, 161
BspMI	ACCTGC	1 cut(s)	252
BspPI	GGATC	4 cut(s)	388, 500, 527, 931
BspQI	GCTCTTC	2 cut(s)	146, 219
BspT104I	TTCGAA	1 cut(s)	671
BspTNI	GGTCTC	1 cut(s)	273
BsrDI	GCAATG	3 cut(s)	636, 653, 743
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	7 cut(s)	393, 505, 519, 721, 826, 923, 982
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	3 cut(s)	115, 768, 886
Bst6I	CTCTTC	5 cut(s)	32, 146, 213, 219, 603
BstBI	TTCGAA	1 cut(s)	671
BstC8I	GCNNGC	4 cut(s)	82, 161, 734, 864
BstDEI	CTNAG	6 cut(s)	123, 164, 182, 618, 906, 1036
BstEII	GGTNACC	1 cut(s)	440
BstENI	CCTNNNNNAGG	1 cut(s)	245
BstF5I	GGATG	5 cut(s)	70, 455, 818, 1090, 1094
BstFNI	CGCG	1 cut(s)	746
BstKTI	GATC	7 cut(s)	396, 508, 522, 724, 829, 926, 985
BstMAI	GTCTC	3 cut(s)	273, 621, 909
BstMBI	GATC	7 cut(s)	393, 505, 519, 721, 826, 923, 982
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 872
BstNI	CCWGG	1 cut(s)	291
BstPI	GGTNACC	1 cut(s)	440
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	3 cut(s)	54, 157, 252
BstUI	CGCG	1 cut(s)	746
BstV1I	GCAGC	3 cut(s)	68, 143, 1073
BstV2I	GAAGAC	1 cut(s)	762
BstX2I	RGATCY	3 cut(s)	393, 505, 923
BstYI	RGATCY	3 cut(s)	393, 505, 923
Bsu36I	CCTNAGG	1 cut(s)	182
BsuI	GTATCC	1 cut(s)	97
BsuRI	GGCC	3 cut(s)	10, 187, 454
BtsCI	GGATG	5 cut(s)	70, 455, 818, 1090, 1094
BveI	ACCTGC	1 cut(s)	252
Cac8I	GCNNGC	4 cut(s)	82, 161, 734, 864
Cfr13I	GGNCC	2 cut(s)	452, 947
CseI	GACGC	1 cut(s)	735
Csp6I	GTAC	1 cut(s)	494
CviAII	CATG	4 cut(s)	95, 200, 478, 806
CviQI	GTAC	1 cut(s)	494
DdeI	CTNAG	6 cut(s)	123, 164, 182, 618, 906, 1036
DpnI	GATC	7 cut(s)	395, 507, 521, 723, 828, 925, 984
DpnII	GATC	7 cut(s)	393, 505, 519, 721, 826, 923, 982
Eam1104I	CTCTTC	5 cut(s)	32, 146, 213, 219, 603
EarI	CTCTTC	5 cut(s)	32, 146, 213, 219, 603
Eco147I	AGGCCT	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	734
Eco31I	GGTCTC	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	947
Eco57I	CTGAAG	1 cut(s)	237
Eco81I	CCTNAGG	1 cut(s)	182
Eco91I	GGTNACC	1 cut(s)	440
EcoNI	CCTNNNNNAGG	1 cut(s)	245
EcoO65I	GGTNACC	1 cut(s)	440
EcoRI	GAATTC	1 cut(s)	897
EcoRII	CCWGG	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	734
FaeI	CATG	4 cut(s)	98, 203, 481, 809
FalI	AAGNNNNNCTT	1 cut(s)	30
FaqI	GGGAC	1 cut(s)	57
FatI	CATG	4 cut(s)	94, 199, 477, 805
FauI	CCCGC	1 cut(s)	741
FbaI	TGATCA	1 cut(s)	982
Fnu4HI	GCNGC	3 cut(s)	57, 157, 1062
FokI	GGATG	4 cut(s)	77, 442, 805, 1097
FriOI	GRGCYC	1 cut(s)	734
Fsp4HI	GCNGC	3 cut(s)	57, 157, 1062
FspBI	CTAG	2 cut(s)	420, 591
GluI	GCNGC	3 cut(s)	57, 157, 1062
HaeIII	GGCC	3 cut(s)	10, 187, 454
HgaI	GACGC	1 cut(s)	735
Hin1II	CATG	4 cut(s)	98, 203, 481, 809
HindIII	AAGCTT	2 cut(s)	344, 952
HinfI	GANTC	6 cut(s)	45, 99, 360, 500, 569, 634
HphI	GGTGA	1 cut(s)	861
Hpy166II	GTNNAC	2 cut(s)	171, 1027
Hpy188I	TCNGA	5 cut(s)	104, 273, 403, 505, 882
Hpy188III	TCNNGA	4 cut(s)	49, 215, 638, 1043
Hpy8I	GTNNAC	2 cut(s)	171, 1027
HpyAV	CCTTC	6 cut(s)	217, 251, 434, 469, 613, 809
HpyCH4III	ACNGT	3 cut(s)	115, 768, 886
HpyCH4V	TGCA	5 cut(s)	56, 159, 278, 533, 752
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 872
HpyF3I	CTNAG	6 cut(s)	123, 164, 182, 618, 906, 1036
Hsp92II	CATG	4 cut(s)	98, 203, 481, 809
Ksp22I	TGATCA	1 cut(s)	982
Kzo9I	GATC	7 cut(s)	393, 505, 519, 721, 826, 923, 982
LguI	GCTCTTC	2 cut(s)	146, 219
Lsp1109I	GCAGC	3 cut(s)	68, 143, 1073
LweI	GCATC	2 cut(s)	55, 875
MaeI	CTAG	2 cut(s)	420, 591
MaeIII	GTNAC	6 cut(s)	370, 440, 570, 679, 740, 760
MalI	GATC	7 cut(s)	395, 507, 521, 723, 828, 925, 984
MboI	GATC	7 cut(s)	393, 505, 519, 721, 826, 923, 982
MflI	RGATCY	3 cut(s)	393, 505, 923
MhlI	GDGCHC	2 cut(s)	485, 734
MluCI	AATT	5 cut(s)	106, 175, 784, 897, 970
MluI	ACGCGT	1 cut(s)	744
MlyI	GAGTC	3 cut(s)	39, 108, 578
MmeI	TCCRAC	3 cut(s)	82, 901, 905
MseI	TTAA	2 cut(s)	783, 939
MslI	CAYNNNNRTG	1 cut(s)	542
MspR9I	CCNGG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	291
MvnI	CGCG	1 cut(s)	746
MwoI	GCNNNNNNNGC	2 cut(s)	65, 872
NdeII	GATC	7 cut(s)	393, 505, 519, 721, 826, 923, 982
NlaIII	CATG	4 cut(s)	98, 203, 481, 809
NlaIV	GGNNCC	1 cut(s)	120
NmeAIII	GCCGAG	1 cut(s)	85
NmuCI	GTSAC	3 cut(s)	570, 740, 760
NspV	TTCGAA	1 cut(s)	671
PaqCI	CACCTGC	1 cut(s)	252
PceI	AGGCCT	1 cut(s)	187
PciSI	GCTCTTC	2 cut(s)	146, 219
PfeI	GAWTC	3 cut(s)	360, 500, 634
PkrI	GCNGC	3 cut(s)	58, 158, 1063
PleI	GAGTC	3 cut(s)	39, 107, 577
PpsI	GAGTC	3 cut(s)	39, 107, 577
PshBI	ATTAAT	1 cut(s)	939
Psp6I	CCWGG	1 cut(s)	289
PspEI	GGTNACC	1 cut(s)	440
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	2 cut(s)	452, 947
PstI	CTGCAG	2 cut(s)	58, 161
PsuI	RGATCY	3 cut(s)	393, 505, 923
RsaI	GTAC	1 cut(s)	495
RsaNI	GTAC	1 cut(s)	494
RseI	CAYNNNNRTG	1 cut(s)	542
SapI	GCTCTTC	2 cut(s)	146, 219
SaqAI	TTAA	2 cut(s)	783, 939
SatI	GCNGC	3 cut(s)	57, 157, 1062
Sau3AI	GATC	7 cut(s)	393, 505, 519, 721, 826, 923, 982
Sau96I	GGNCC	2 cut(s)	452, 947
SchI	GAGTC	3 cut(s)	39, 108, 578
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	2 cut(s)	485, 734
SfaNI	GCATC	2 cut(s)	55, 875
SfcI	CTRYAG	3 cut(s)	54, 157, 252
SfuI	TTCGAA	1 cut(s)	671
SinI	GGWCC	1 cut(s)	947
SmiMI	CAYNNNNRTG	1 cut(s)	542
SmlI	CTYRAG	2 cut(s)	194, 1012
SmoI	CTYRAG	2 cut(s)	194, 1012
Sse9I	AATT	5 cut(s)	106, 175, 784, 897, 970
SseBI	AGGCCT	1 cut(s)	187
SsiI	CCGC	2 cut(s)	734, 822
SspMI	CTAG	2 cut(s)	420, 591
StuI	AGGCCT	1 cut(s)	187
StyD4I	CCNGG	1 cut(s)	289
TaaI	ACNGT	3 cut(s)	115, 768, 886
TaqI	TCGA	2 cut(s)	363, 671
TasI	AATT	5 cut(s)	106, 175, 784, 897, 970
TfiI	GAWTC	3 cut(s)	360, 500, 634
Tru1I	TTAA	2 cut(s)	783, 939
Tru9I	TTAA	2 cut(s)	783, 939
TseFI	GTSAC	3 cut(s)	570, 740, 760
TseI	GCWGC	3 cut(s)	56, 156, 1061
Tsp45I	GTSAC	3 cut(s)	570, 740, 760
TspDTI	ATGAA	9 cut(s)	233, 569, 642, 647, 690, 807, 918, 993, 1008
VpaK11BI	GGWCC	1 cut(s)	947
VspI	ATTAAT	1 cut(s)	939
XagI	CCTNNNNNAGG	1 cut(s)	245
XapI	RAATTY	2 cut(s)	897, 970
XspI	CTAG	2 cut(s)	420, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.