Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014970

Physical Location & Seq

Genomic Coordinates Forward (+)

37147574 .. 37149640

Gene Structure 2067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g49630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGCATTTCTTGCCTCTGCTCTCTTTGCTAAACAAAACCCTTCCCTTTCTTCATTTTAAATGTACTGGCAAACTTGCATCACCATTACATAATAATAATATTCCCCTTGATTCACATCCCTCTCTTTCTGTTTCCCTCTCTGAGATTCTCAAAATGGGAAGGCCACCTTGCTGTGATAAATCAAATGTGAAGAGGGGCCTCTGGACTGCAGCCGAGGATGCGAAACTTCTTGCTTGTGTATCCAAACATGGAGTTGGAAACTGGACTGTGGTTCCTAAGAAAGCAGGATTGAACAGATGTGGGAAGAGCTGCAGGCTTAGGTGGACTAATTACCTCAGGCCTGACCTCAAGCATGACACCTTCACTCCTGAAGAGGAAGAGCATATTATCAACCTTCATAAGGCTATAGGAAGCAGGTGGTCTCTGATTGCAAAACAACTACCAGGAAGAACAGATAATGATGTGAAGAACTACTGGAATACCAAGCTGAAAAAGAAGCTTTCCAAGATAGGAATTGACCCTGTAACCCACAAACCTATCTCCCATGTCCTCTCTGACTTTGGAAATATCACTTGCCTTCCACACCACATCGGCGACCATCTTGAGCCATCCTTTAACAACAACTTGAACACGAGCACCACATTCGTATCTGAATCAGATCCATCTTCGGGGATCACAGGACTTGCATACACCAATATGGTGATGATGAACCCCATTATGGAGTCACATGATCACTCTCATACTAGTACTCTTCCCTTCGGCTTTCTGTCTCAGTTTCAAGCGATGAATCAAGACGACAATGTGTCATTGCCTCCACACTTTTTGAATGAAGTAACTTCCTCTTGCTCATCATCATCTTCTCCTCCTGCCACTGATCTATTGAGCCCGCAATGTCATGCTTCTGCACAAGTTATCACACCATCTTCTTCTCCCTTTAATTGGAGTGAGTTTCTTCTTCAGGATCCTCTTTCATCCGCAGATCAACCCAAGCAAGAAGAAGTGTTTCATGGAGTTCTATCATCACCAGCCAATCCCACAGTTAATGGAATTCAATCTCAGTCATTTGAAGTTGGATCTTCATCAACCATTAATGGAGGTCCAAGCTTGAACAACAACAAAAATTTGGCTAATGATCACATAGCTTCTTCTTCCTTGAGTTCATTTGTGGACAGAATCATAGGTCAAGATAGTGAGATGAGGGCAGCATTGTTCCCTGAACTTTTGGATGGATCCTTTGATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033036 GO:0033037 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051179 GO:0051252 GO:0051253 GO:0052545 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1900376 GO:1900377 GO:1901363 GO:1901700 GO:1902679 GO:1903085 GO:1903086 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

415

Amino Acids

45.4

Weight (kDa)

6.46

Isoelectric Point (pI)

59.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	65 - 112	3.6e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	68 - 128	4.5e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	120 - 161	1e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	121 - 170	7.1e-11	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28470
fragaria_vesca	FvH4_6g49630
malus_domestica	MD09G1042900.v1.1 MD17G1044400.v1.1
prunus_persica	Prupe.3G274800_v2.0.a1
pyrus_communis	pycom111g03350
rosa_chinensis	RchiOBHm_Chr2g0169671
rosa_laevigata	RLG00000021893
rosa_multiflora	Rmu_co8425035.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081900
rosa_rugosa	Rorug02G0542000
rosa_samantha	Rh2AG614300 Rh2BG626500 Rh2CG595800 Rh2DG637400
rosa_wichuraiana	Rw2G050920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	405
Acc36I	ACCTGC	1 cut(s)	405
AciI	CCGC	2 cut(s)	887, 975
AclWI	GGATC	7 cut(s)	653, 680, 956, 969, 1081, 1224, 1237
AcsI	RAATTY	2 cut(s)	1047, 1120
AcuI	CTGAAG	2 cut(s)	390, 941
AfaI	GTAC	2 cut(s)	64, 748
AfiI	CCNNNNNNNGG	4 cut(s)	400, 668, 718, 939
AgsI	TTSAA	7 cut(s)	292, 628, 779, 826, 1052, 1067, 1108
AhdI	GACNNNNNGTC	1 cut(s)	802
AhlI	ACTAGT	1 cut(s)	743
AjnI	CCWGG	1 cut(s)	442
AluBI	AGCT	5 cut(s)	309, 487, 499, 1104, 1142
AluI	AGCT	5 cut(s)	309, 487, 499, 1104, 1142
Alw21I	GWGCWC	1 cut(s)	638
Alw26I	GTCTC	2 cut(s)	426, 774
AlwI	GGATC	7 cut(s)	653, 680, 956, 969, 1081, 1224, 1237
AoxI	GGCC	3 cut(s)	161, 196, 338
ApeKI	GCWGC	3 cut(s)	209, 309, 1202
ApoI	RAATTY	2 cut(s)	1047, 1120
AseI	ATTAAT	1 cut(s)	1089
Asp700I	GAANNNNTTC	1 cut(s)	1002
AspS9I	GGNCC	2 cut(s)	196, 1097
AsuHPI	GGTGA	3 cut(s)	72, 712, 1014
AvaII	GGWCC	1 cut(s)	1097
AxyI	CCTNAGG	1 cut(s)	335
BaeI	ACNNNNGTAYC	2 cut(s)	630, 663
BamHI	GGATCC	2 cut(s)	961, 1229
BanII	GRGCYC	1 cut(s)	887
BauI	CACGAG	1 cut(s)	631
Bbv12I	GWGCWC	1 cut(s)	638
BbvI	GCAGC	3 cut(s)	221, 296, 1214
BccI	CCATC	5 cut(s)	606, 616, 670, 928, 1220
BcgI	CGANNNNNNTGC	2 cut(s)	625, 659
BciT130I	CCWGG	1 cut(s)	444
BciVI	GTATCC	1 cut(s)	250
BclI	TGATCA	2 cut(s)	730, 1132
BcoDI	GTCTC	2 cut(s)	426, 774
BcuI	ACTAGT	1 cut(s)	743
BfaI	CTAG	1 cut(s)	744
BfmI	CTRYAG	3 cut(s)	207, 310, 405
BfuAI	ACCTGC	1 cut(s)	405
BfuI	GTATCC	1 cut(s)	250
BisI	GCNGC	3 cut(s)	210, 310, 1203
BlsI	GCNGC	3 cut(s)	211, 311, 1204
BmcAI	AGTACT	1 cut(s)	748
Bme1390I	CCNGG	1 cut(s)	444
Bme18I	GGWCC	1 cut(s)	1097
BmeRI	GACNNNNNGTC	1 cut(s)	802
BmgT120I	GGNCC	2 cut(s)	196, 1097
BmiI	GGNNCC	4 cut(s)	197, 273, 963, 1231
BmrFI	CCNGG	1 cut(s)	444
BmsI	GCATC	2 cut(s)	86, 208
Bpu10I	CCTNAGC	1 cut(s)	317
BpuEI	CTTGAG	3 cut(s)	332, 623, 1174
BsaBI	GATNNNNATC	2 cut(s)	114, 1078
BsaI	GGTCTC	1 cut(s)	426
BsaJI	CCNNGG	1 cut(s)	213
BsaXI	ACNNNNNCTCC	2 cut(s)	349, 379
Bsc4I	CCNNNNNNNGG	4 cut(s)	400, 668, 718, 939
Bse1I	ACTGG	3 cut(s)	70, 266, 479
Bse21I	CCTNAGG	1 cut(s)	335
Bse3DI	GCAATG	2 cut(s)	806, 896
Bse8I	GATNNNNATC	2 cut(s)	114, 1078
BseBI	CCWGG	1 cut(s)	444
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	5 cut(s)	115, 223, 608, 971, 1231
BseJI	GATNNNNATC	2 cut(s)	114, 1078
BseLI	CCNNNNNNNGG	4 cut(s)	400, 668, 718, 939
BseMI	GCAATG	2 cut(s)	806, 896
BseMII	CTCAG	4 cut(s)	132, 349, 785, 1070
BseNI	ACTGG	3 cut(s)	70, 266, 479
BseRI	GAGGAG	1 cut(s)	852
BseXI	GCAGC	3 cut(s)	221, 296, 1214
BsgI	GTGCAG	1 cut(s)	888
BshFI	GGCC	3 cut(s)	163, 198, 340
BsiHKAI	GWGCWC	1 cut(s)	638
BslI	CCNNNNNNNGG	4 cut(s)	400, 668, 718, 939
BsmAI	GTCTC	2 cut(s)	426, 774
BsnI	GGCC	3 cut(s)	163, 198, 340
Bso31I	GGTCTC	1 cut(s)	426
Bsp1286I	GDGCHC	2 cut(s)	638, 887
Bsp143I	GATC	9 cut(s)	658, 672, 730, 874, 961, 979, 1073, 1132, 1229
BspACI	CCGC	2 cut(s)	887, 975
BspANI	GGCC	3 cut(s)	163, 198, 340
BspCNI	CTCAG	4 cut(s)	133, 348, 784, 1069
BspLI	GGNNCC	4 cut(s)	197, 273, 963, 1231
BspMAI	CTGCAG	2 cut(s)	211, 314
BspMI	ACCTGC	1 cut(s)	405
BspPI	GGATC	7 cut(s)	653, 680, 956, 969, 1081, 1224, 1237
BspQI	GCTCTTC	2 cut(s)	299, 372
BspTNI	GGTCTC	1 cut(s)	426
BsrDI	GCAATG	2 cut(s)	806, 896
BsrI	ACTGG	3 cut(s)	70, 266, 479
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	9 cut(s)	658, 672, 730, 874, 961, 979, 1073, 1132, 1229
BssSI	CACGAG	1 cut(s)	631
Bst2BI	CACGAG	1 cut(s)	631
Bst2UI	CCWGG	1 cut(s)	444
Bst4CI	ACNGT	2 cut(s)	268, 1039
Bst6I	CTCTTC	5 cut(s)	185, 299, 366, 372, 756
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstC8I	GCNNGC	2 cut(s)	314, 887
BstDEI	CTNAG	6 cut(s)	141, 276, 317, 335, 771, 1056
BstENI	CCTNNNNNAGG	1 cut(s)	398
BstF5I	GGATG	5 cut(s)	115, 223, 608, 971, 1231
BstKTI	GATC	9 cut(s)	661, 675, 733, 877, 964, 982, 1076, 1135, 1232
BstMAI	GTCTC	2 cut(s)	426, 774
BstMBI	GATC	9 cut(s)	658, 672, 730, 874, 961, 979, 1073, 1132, 1229
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 25, 218
BstNI	CCWGG	1 cut(s)	444
BstSCI	CCNGG	1 cut(s)	442
BstSFI	CTRYAG	3 cut(s)	207, 310, 405
BstV1I	GCAGC	3 cut(s)	221, 296, 1214
BstX2I	RGATCY	4 cut(s)	658, 961, 1073, 1229
BstYI	RGATCY	4 cut(s)	658, 961, 1073, 1229
Bsu36I	CCTNAGG	1 cut(s)	335
BsuI	GTATCC	1 cut(s)	250
BsuRI	GGCC	3 cut(s)	163, 198, 340
BtgZI	GCGATG	1 cut(s)	797
BtsCI	GGATG	5 cut(s)	115, 223, 608, 971, 1231
BtsIMutI	CAGTG	1 cut(s)	870
BveI	ACCTGC	1 cut(s)	405
Cac8I	GCNNGC	2 cut(s)	314, 887
Cfr13I	GGNCC	2 cut(s)	196, 1097
Csp6I	GTAC	2 cut(s)	63, 747
CspCI	CAANNNNNGTGG	2 cut(s)	804, 839
CviAII	CATG	6 cut(s)	248, 353, 545, 728, 896, 1007
CviQI	GTAC	2 cut(s)	63, 747
DdeI	CTNAG	6 cut(s)	141, 276, 317, 335, 771, 1056
DpnI	GATC	9 cut(s)	660, 674, 732, 876, 963, 981, 1075, 1134, 1231
DpnII	GATC	9 cut(s)	658, 672, 730, 874, 961, 979, 1073, 1132, 1229
DraI	TTTAAA	1 cut(s)	58
DriI	GACNNNNNGTC	1 cut(s)	802
Eam1104I	CTCTTC	5 cut(s)	185, 299, 366, 372, 756
Eam1105I	GACNNNNNGTC	1 cut(s)	802
EarI	CTCTTC	5 cut(s)	185, 299, 366, 372, 756
Eco147I	AGGCCT	1 cut(s)	340
Eco24I	GRGCYC	1 cut(s)	887
Eco31I	GGTCTC	1 cut(s)	426
Eco47I	GGWCC	1 cut(s)	1097
Eco57I	CTGAAG	2 cut(s)	390, 941
Eco81I	CCTNAGG	1 cut(s)	335
EcoNI	CCTNNNNNAGG	1 cut(s)	398
EcoO109I	RGGNCCY	1 cut(s)	196
EcoRI	GAATTC	1 cut(s)	1047
EcoRII	CCWGG	1 cut(s)	442
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	887
FaeI	CATG	6 cut(s)	251, 356, 548, 731, 899, 1010
FalI	AAGNNNNNCTT	2 cut(s)	151, 183
FatI	CATG	6 cut(s)	247, 352, 544, 727, 895, 1006
FauI	CCCGC	1 cut(s)	894
FbaI	TGATCA	2 cut(s)	730, 1132
Fnu4HI	GCNGC	3 cut(s)	210, 310, 1203
FokI	GGATG	5 cut(s)	102, 230, 595, 958, 1238
FriOI	GRGCYC	1 cut(s)	887
Fsp4HI	GCNGC	3 cut(s)	210, 310, 1203
FspBI	CTAG	1 cut(s)	744
GluI	GCNGC	3 cut(s)	210, 310, 1203
HaeIII	GGCC	3 cut(s)	163, 198, 340
Hin1II	CATG	6 cut(s)	251, 356, 548, 731, 899, 1010
HindIII	AAGCTT	2 cut(s)	497, 1102
HinfI	GANTC	6 cut(s)	110, 145, 653, 722, 787, 1173
HphI	GGTGA	3 cut(s)	72, 712, 1014
Hpy166II	GTNNAC	2 cut(s)	324, 1168
Hpy188I	TCNGA	5 cut(s)	142, 426, 556, 652, 658
Hpy188III	TCNNGA	6 cut(s)	202, 368, 602, 791, 959, 1184
Hpy8I	GTNNAC	2 cut(s)	324, 1168
HpyAV	CCTTC	6 cut(s)	50, 153, 370, 404, 587, 766
HpyCH4III	ACNGT	2 cut(s)	268, 1039
HpyCH4V	TGCA	7 cut(s)	4, 77, 209, 312, 431, 686, 905
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 25, 218
HpyF3I	CTNAG	6 cut(s)	141, 276, 317, 335, 771, 1056
Hsp92II	CATG	6 cut(s)	251, 356, 548, 731, 899, 1010
Ksp22I	TGATCA	2 cut(s)	730, 1132
Kzo9I	GATC	9 cut(s)	658, 672, 730, 874, 961, 979, 1073, 1132, 1229
LguI	GCTCTTC	2 cut(s)	299, 372
Lsp1109I	GCAGC	3 cut(s)	221, 296, 1214
LweI	GCATC	2 cut(s)	86, 208
MaeI	CTAG	1 cut(s)	744
MaeIII	GTNAC	3 cut(s)	523, 723, 832
MalI	GATC	9 cut(s)	660, 674, 732, 876, 963, 981, 1075, 1134, 1231
MboI	GATC	9 cut(s)	658, 672, 730, 874, 961, 979, 1073, 1132, 1229
MflI	RGATCY	4 cut(s)	658, 961, 1073, 1229
MhlI	GDGCHC	2 cut(s)	638, 887
MluCI	AATT	5 cut(s)	328, 513, 937, 1047, 1120
MlyI	GAGTC	1 cut(s)	731
MmeI	TCCRAC	2 cut(s)	235, 1051
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	1002
MseI	TTAA	5 cut(s)	57, 615, 936, 1041, 1089
MslI	CAYNNNNRTG	1 cut(s)	695
MspR9I	CCNGG	1 cut(s)	444
MvaI	CCWGG	1 cut(s)	444
MwoI	GCNNNNNNNGC	3 cut(s)	10, 25, 218
NdeII	GATC	9 cut(s)	658, 672, 730, 874, 961, 979, 1073, 1132, 1229
NlaIII	CATG	6 cut(s)	251, 356, 548, 731, 899, 1010
NlaIV	GGNNCC	4 cut(s)	197, 273, 963, 1231
NmeAIII	GCCGAG	1 cut(s)	238
NmuCI	GTSAC	1 cut(s)	723
NsiI	ATGCAT	1 cut(s)	6
PaqCI	CACCTGC	1 cut(s)	405
PceI	AGGCCT	1 cut(s)	340
PciSI	GCTCTTC	2 cut(s)	299, 372
PdmI	GAANNNNTTC	1 cut(s)	1002
PfeI	GAWTC	5 cut(s)	110, 145, 653, 787, 1173
PkrI	GCNGC	3 cut(s)	211, 311, 1204
PleI	GAGTC	1 cut(s)	730
PpsI	GAGTC	1 cut(s)	730
PshBI	ATTAAT	1 cut(s)	1089
Psp6I	CCWGG	1 cut(s)	442
PspGI	CCWGG	1 cut(s)	442
PspN4I	GGNNCC	4 cut(s)	197, 273, 963, 1231
PspPI	GGNCC	2 cut(s)	196, 1097
PstI	CTGCAG	2 cut(s)	211, 314
PsuI	RGATCY	4 cut(s)	658, 961, 1073, 1229
RsaI	GTAC	2 cut(s)	64, 748
RsaNI	GTAC	2 cut(s)	63, 747
RseI	CAYNNNNRTG	1 cut(s)	695
SapI	GCTCTTC	2 cut(s)	299, 372
SaqAI	TTAA	5 cut(s)	57, 615, 936, 1041, 1089
SatI	GCNGC	3 cut(s)	210, 310, 1203
Sau3AI	GATC	9 cut(s)	658, 672, 730, 874, 961, 979, 1073, 1132, 1229
Sau96I	GGNCC	2 cut(s)	196, 1097
ScaI	AGTACT	1 cut(s)	748
SchI	GAGTC	1 cut(s)	731
ScrFI	CCNGG	1 cut(s)	444
SduI	GDGCHC	2 cut(s)	638, 887
SfaNI	GCATC	2 cut(s)	86, 208
SfcI	CTRYAG	3 cut(s)	207, 310, 405
SinI	GGWCC	1 cut(s)	1097
SmiMI	CAYNNNNRTG	1 cut(s)	695
SmlI	CTYRAG	3 cut(s)	347, 602, 1153
SmoI	CTYRAG	3 cut(s)	347, 602, 1153
SpeI	ACTAGT	1 cut(s)	743
Sse9I	AATT	5 cut(s)	328, 513, 937, 1047, 1120
SseBI	AGGCCT	1 cut(s)	340
SsiI	CCGC	2 cut(s)	887, 975
SspI	AATATT	1 cut(s)	100
SspMI	CTAG	1 cut(s)	744
StuI	AGGCCT	1 cut(s)	340
StyD4I	CCNGG	1 cut(s)	442
TaaI	ACNGT	2 cut(s)	268, 1039
TasI	AATT	5 cut(s)	328, 513, 937, 1047, 1120
TatI	WGTACW	2 cut(s)	62, 746
TfiI	GAWTC	5 cut(s)	110, 145, 653, 787, 1173
Tru1I	TTAA	5 cut(s)	57, 615, 936, 1041, 1089
Tru9I	TTAA	5 cut(s)	57, 615, 936, 1041, 1089
TscAI	CASTG	1 cut(s)	877
TseFI	GTSAC	1 cut(s)	723
TseI	GCWGC	3 cut(s)	209, 309, 1202
Tsp45I	GTSAC	1 cut(s)	723
TspDTI	ATGAA	9 cut(s)	41, 386, 722, 800, 843, 960, 995, 1068, 1149
TspRI	CASTG	1 cut(s)	877
VpaK11BI	GGWCC	1 cut(s)	1097
VspI	ATTAAT	1 cut(s)	1089
XagI	CCTNNNNNAGG	1 cut(s)	398
XapI	RAATTY	2 cut(s)	1047, 1120
XmnI	GAANNNNTTC	1 cut(s)	1002
XspI	CTAG	1 cut(s)	744
ZrmI	AGTACT	1 cut(s)	748
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.