Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0014970

Physical Location & Seq

Genomic Coordinates Reverse (-)

2765884 .. 2767621

Gene Structure 1738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1042900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGTTAACTTCGTTAACTGTTTATCTAAGCGACTCAACAGATGTGGGAAGAGTTGCAGGCTTAGGTGGACTAATTACCTGAGGCCTGACCTCAAGCATGACAACTTCACTCCTCAAGAGGAAGAGCATATCATTGACCTGCACAAGGCCATAGGAAGCAGGTGGTCTCGCATTGCAAAACGACTACCAGGAAGAACGGACAATGATGTCAAAAACTACTGGAACACCAAGCTCAAAAAGAAGCTTTCCAAGATGGGAATTGACCCTGTCACCCACAAACCCTACTCTCAGATCCTCTCCGACTACGGAAACATCAGCGGCCTCCCAAGCACTGACGGGAATCATCCGTTCTCGTCCCTTTTCAAGCAATCGAAAAGTGCATTCGCACCCGAATTAAACTCTTCCTGCATCACAGGAATTCCATACACCAATGTGACCTTGAACCCTAATATTAATGGACAAGGATTTTCGCAACCAACTAACGCGTGCTGGGAGTCACACGAGGCTCAGATTACGCCGTCCTCTTCTTCGTTCAATTGGAGGGAGTATCTTCTGTACGATCCTTTTACATCAGCTGATCATTTGAAGCAAGAACAAGATTTGCATGGGGTGATGATGTCATCTCCAGAAAACCCTACATTTGGAGTGCAAGGCAGCTCCGATGCAATTGAGGGATGTGATTTTGTAGGTCAAAGGAGCTATGACTGGCCTGATCACCAAGCTTCTTCAACTTCCATGTGTTCGTTTGTGGAGACTATCTTGGATCAAGACAGTGAGATGCAGGCAGCTTTTCCTCAACTTTTGGATGCTTCTTTCGATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033036 GO:0033037 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051179 GO:0051252 GO:0051253 GO:0052545 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1900376 GO:1900377 GO:1901363 GO:1901700 GO:1902679 GO:1903085 GO:1903086 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

275

Amino Acids

30.97

Weight (kDa)

5.98

Isoelectric Point (pI)

59.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	34 - 76	6.9e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	36 - 84	4.5e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28470
fragaria_vesca	FvH4_6g49630
malus_domestica	MD09G1042900.v1.1 MD17G1044400.v1.1
prunus_persica	Prupe.3G274800_v2.0.a1
pyrus_communis	pycom111g03350
rosa_chinensis	RchiOBHm_Chr2g0169671
rosa_laevigata	RLG00000021893
rosa_multiflora	Rmu_co8425035.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081900
rosa_rugosa	Rorug02G0542000
rosa_samantha	Rh2AG614300 Rh2BG626500 Rh2CG595800 Rh2DG637400
rosa_wichuraiana	Rw2G050920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	150
AasI	GACNNNNNNGTC	1 cut(s)	206
Acc36I	ACCTGC	2 cut(s)	147, 150
AccII	CGCG	1 cut(s)	485
AciI	CCGC	1 cut(s)	318
AclWI	GGATC	3 cut(s)	286, 554, 771
AcsI	RAATTY	1 cut(s)	417
AfaI	GTAC	1 cut(s)	557
AfiI	CCNNNNNNNGG	2 cut(s)	145, 641
AflIII	ACRYGT	1 cut(s)	483
AgsI	TTSAA	5 cut(s)	364, 442, 535, 586, 729
AjnI	CCWGG	1 cut(s)	187
AleI	CACNNNNGTG	1 cut(s)	431
AluBI	AGCT	7 cut(s)	232, 244, 575, 657, 699, 722, 788
AluI	AGCT	7 cut(s)	232, 244, 575, 657, 699, 722, 788
Alw26I	GTCTC	2 cut(s)	171, 746
AlwI	GGATC	3 cut(s)	286, 554, 771
AoxI	GGCC	4 cut(s)	83, 147, 319, 707
ApeKI	GCWGC	2 cut(s)	654, 785
ApoI	RAATTY	1 cut(s)	417
AseI	ATTAAT	1 cut(s)	453
AsuHPI	GGTGA	3 cut(s)	262, 622, 707
AxyI	CCTNAGG	1 cut(s)	80
BauI	CACGAG	1 cut(s)	500
BbvI	GCAGC	2 cut(s)	666, 797
BccI	CCATC	1 cut(s)	247
BceAI	ACGGC	1 cut(s)	502
BciT130I	CCWGG	1 cut(s)	189
BclI	TGATCA	2 cut(s)	577, 712
BcoDI	GTCTC	2 cut(s)	171, 746
BfuAI	ACCTGC	2 cut(s)	147, 150
BisI	GCNGC	3 cut(s)	319, 655, 786
BlsI	GCNGC	3 cut(s)	320, 656, 787
Bme1390I	CCNGG	1 cut(s)	189
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	4 cut(s)	417, 652, 768, 796
BpmI	CTGGAG	1 cut(s)	609
Bpu10I	CCTNAGC	1 cut(s)	62
BpuEI	CTTGAG	2 cut(s)	77, 99
BsaI	GGTCTC	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	2 cut(s)	145, 641
Bse1I	ACTGG	2 cut(s)	224, 710
Bse21I	CCTNAGG	1 cut(s)	80
Bse3DI	GCAATG	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	189
BseGI	GGATG	3 cut(s)	343, 680, 811
BseLI	CCNNNNNNNGG	2 cut(s)	145, 641
BseMI	GCAATG	1 cut(s)	171
BseMII	CTCAG	3 cut(s)	71, 302, 521
BseNI	ACTGG	2 cut(s)	224, 710
BseRI	GAGGAG	1 cut(s)	102
BseXI	GCAGC	2 cut(s)	666, 797
BseYI	CCCAGC	1 cut(s)	489
BsgI	GTGCAG	1 cut(s)	125
Bsh1236I	CGCG	1 cut(s)	485
BshFI	GGCC	4 cut(s)	85, 149, 321, 709
BslFI	GGGAC	1 cut(s)	340
BslI	CCNNNNNNNGG	2 cut(s)	145, 641
BsmAI	GTCTC	2 cut(s)	171, 746
BsmFI	GGGAC	1 cut(s)	340
BsmI	GAATGC	1 cut(s)	380
BsnI	GGCC	4 cut(s)	85, 149, 321, 709
Bso31I	GGTCTC	1 cut(s)	171
Bsp143I	GATC	5 cut(s)	291, 559, 577, 712, 763
BspACI	CCGC	1 cut(s)	318
BspANI	GGCC	4 cut(s)	85, 149, 321, 709
BspCNI	CTCAG	3 cut(s)	72, 301, 520
BspFNI	CGCG	1 cut(s)	485
BspMI	ACCTGC	2 cut(s)	147, 150
BspPI	GGATC	3 cut(s)	286, 554, 771
BspQI	GCTCTTC	1 cut(s)	117
BspTNI	GGTCTC	1 cut(s)	171
BsrDI	GCAATG	1 cut(s)	171
BsrI	ACTGG	2 cut(s)	224, 710
BssMI	GATC	5 cut(s)	291, 559, 577, 712, 763
BssSI	CACGAG	1 cut(s)	500
Bst2BI	CACGAG	1 cut(s)	500
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	2 cut(s)	20, 773
Bst6I	CTCTTC	4 cut(s)	44, 117, 406, 529
BstC8I	GCNNGC	3 cut(s)	59, 487, 783
BstDEI	CTNAG	5 cut(s)	27, 62, 80, 288, 507
BstENI	CCTNNNNNAGG	1 cut(s)	143
BstF5I	GGATG	3 cut(s)	343, 680, 811
BstFNI	CGCG	1 cut(s)	485
BstKTI	GATC	5 cut(s)	294, 562, 580, 715, 766
BstMAI	GTCTC	2 cut(s)	171, 746
BstMBI	GATC	5 cut(s)	291, 559, 577, 712, 763
BstMWI	GCNNNNNNNGC	1 cut(s)	327
BstNI	CCWGG	1 cut(s)	189
BstSCI	CCNGG	1 cut(s)	187
BstUI	CGCG	1 cut(s)	485
BstV1I	GCAGC	2 cut(s)	666, 797
BstX2I	RGATCY	1 cut(s)	291
BstYI	RGATCY	1 cut(s)	291
Bsu36I	CCTNAGG	1 cut(s)	80
BsuRI	GGCC	4 cut(s)	85, 149, 321, 709
BtsCI	GGATG	3 cut(s)	343, 680, 811
BtsIMutI	CAGTG	2 cut(s)	330, 778
BveI	ACCTGC	2 cut(s)	147, 150
Cac8I	GCNNGC	3 cut(s)	59, 487, 783
Csp6I	GTAC	1 cut(s)	556
CspCI	CAANNNNNGTGG	2 cut(s)	25, 60
CviAII	CATG	3 cut(s)	98, 605, 736
CviQI	GTAC	1 cut(s)	556
DdeI	CTNAG	5 cut(s)	27, 62, 80, 288, 507
DpnI	GATC	5 cut(s)	293, 561, 579, 714, 765
DpnII	GATC	5 cut(s)	291, 559, 577, 712, 763
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
Eam1104I	CTCTTC	4 cut(s)	44, 117, 406, 529
EarI	CTCTTC	4 cut(s)	44, 117, 406, 529
Eco147I	AGGCCT	1 cut(s)	85
Eco31I	GGTCTC	1 cut(s)	171
Eco81I	CCTNAGG	1 cut(s)	80
EcoNI	CCTNNNNNAGG	1 cut(s)	143
EcoRI	GAATTC	1 cut(s)	417
EcoRII	CCWGG	1 cut(s)	187
FaeI	CATG	3 cut(s)	101, 608, 739
FaiI	YATR	7 cut(s)	99, 129, 152, 424, 606, 702, 737
FaqI	GGGAC	1 cut(s)	340
FatI	CATG	3 cut(s)	97, 604, 735
FbaI	TGATCA	2 cut(s)	577, 712
Fnu4HI	GCNGC	3 cut(s)	319, 655, 786
FokI	GGATG	3 cut(s)	330, 687, 818
Fsp4HI	GCNGC	3 cut(s)	319, 655, 786
GluI	GCNGC	3 cut(s)	319, 655, 786
GsaI	CCCAGC	1 cut(s)	493
GsuI	CTGGAG	1 cut(s)	609
HaeIII	GGCC	4 cut(s)	85, 149, 321, 709
Hin1II	CATG	3 cut(s)	101, 608, 739
HincII	GTYRAC	2 cut(s)	7, 16
HindII	GTYRAC	2 cut(s)	7, 16
HindIII	AAGCTT	2 cut(s)	242, 720
HinfI	GANTC	3 cut(s)	33, 340, 494
HpaI	GTTAAC	2 cut(s)	7, 16
HphI	GGTGA	3 cut(s)	262, 622, 707
Hpy166II	GTNNAC	3 cut(s)	7, 16, 69
Hpy188I	TCNGA	4 cut(s)	291, 301, 510, 661
Hpy188III	TCNNGA	3 cut(s)	116, 626, 767
Hpy8I	GTNNAC	3 cut(s)	7, 16, 69
HpyCH4III	ACNGT	2 cut(s)	20, 773
HpyCH4V	TGCA	9 cut(s)	57, 142, 176, 380, 408, 604, 649, 665, 781
HpyF10VI	GCNNNNNNNGC	1 cut(s)	327
HpyF3I	CTNAG	5 cut(s)	27, 62, 80, 288, 507
Hsp92II	CATG	3 cut(s)	101, 608, 739
Ksp22I	TGATCA	2 cut(s)	577, 712
KspAI	GTTAAC	2 cut(s)	7, 16
Kzo9I	GATC	5 cut(s)	291, 559, 577, 712, 763
LguI	GCTCTTC	1 cut(s)	117
LmnI	GCTCC	2 cut(s)	662, 696
Lsp1109I	GCAGC	2 cut(s)	666, 797
LweI	GCATC	4 cut(s)	417, 652, 768, 796
MaeIII	GTNAC	3 cut(s)	268, 433, 495
MalI	GATC	5 cut(s)	293, 561, 579, 714, 765
MboI	GATC	5 cut(s)	291, 559, 577, 712, 763
MboII	GAAGA	8 cut(s)	61, 134, 204, 393, 516, 519, 542, 717
MfeI	CAATTG	2 cut(s)	535, 666
MflI	RGATCY	1 cut(s)	291
MluCI	AATT	6 cut(s)	73, 258, 392, 417, 535, 666
MluI	ACGCGT	1 cut(s)	483
MlyI	GAGTC	2 cut(s)	27, 503
MmeI	TCCRAC	1 cut(s)	324
MseI	TTAA	5 cut(s)	6, 15, 395, 453, 823
MslI	CAYNNNNRTG	1 cut(s)	431
MspA1I	CMGCKG	2 cut(s)	318, 575
MspR9I	CCNGG	1 cut(s)	189
MunI	CAATTG	2 cut(s)	535, 666
Mva1269I	GAATGC	1 cut(s)	380
MvaI	CCWGG	1 cut(s)	189
MvnI	CGCG	1 cut(s)	485
MwoI	GCNNNNNNNGC	1 cut(s)	327
NdeII	GATC	5 cut(s)	291, 559, 577, 712, 763
NlaIII	CATG	3 cut(s)	101, 608, 739
NmuCI	GTSAC	3 cut(s)	268, 433, 495
OliI	CACNNNNGTG	1 cut(s)	431
PaqCI	CACCTGC	1 cut(s)	150
PceI	AGGCCT	1 cut(s)	85
PciSI	GCTCTTC	1 cut(s)	117
PctI	GAATGC	1 cut(s)	380
PfeI	GAWTC	1 cut(s)	340
PflFI	GACNNNGTC	1 cut(s)	266
PkrI	GCNGC	3 cut(s)	320, 656, 787
PleI	GAGTC	2 cut(s)	27, 502
PpsI	GAGTC	2 cut(s)	27, 502
PshBI	ATTAAT	1 cut(s)	453
Psp6I	CCWGG	1 cut(s)	187
PspFI	CCCAGC	1 cut(s)	489
PspGI	CCWGG	1 cut(s)	187
PsuI	RGATCY	1 cut(s)	291
PsyI	GACNNNGTC	1 cut(s)	266
PvuII	CAGCTG	1 cut(s)	575
RsaI	GTAC	1 cut(s)	557
RsaNI	GTAC	1 cut(s)	556
RseI	CAYNNNNRTG	1 cut(s)	431
SapI	GCTCTTC	1 cut(s)	117
SaqAI	TTAA	5 cut(s)	6, 15, 395, 453, 823
SatI	GCNGC	3 cut(s)	319, 655, 786
Sau3AI	GATC	5 cut(s)	291, 559, 577, 712, 763
SchI	GAGTC	2 cut(s)	27, 503
ScrFI	CCNGG	1 cut(s)	189
SfaNI	GCATC	4 cut(s)	417, 652, 768, 796
SmiMI	CAYNNNNRTG	1 cut(s)	431
SmlI	CTYRAG	2 cut(s)	92, 114
SmoI	CTYRAG	2 cut(s)	92, 114
Sse9I	AATT	6 cut(s)	73, 258, 392, 417, 535, 666
SseBI	AGGCCT	1 cut(s)	85
SsiI	CCGC	1 cut(s)	318
SspI	AATATT	1 cut(s)	451
StuI	AGGCCT	1 cut(s)	85
StyD4I	CCNGG	1 cut(s)	187
TaaI	ACNGT	2 cut(s)	20, 773
TaqI	TCGA	2 cut(s)	371, 816
TasI	AATT	6 cut(s)	73, 258, 392, 417, 535, 666
TauI	GCSGC	1 cut(s)	321
TfiI	GAWTC	1 cut(s)	340
Tru1I	TTAA	5 cut(s)	6, 15, 395, 453, 823
Tru9I	TTAA	5 cut(s)	6, 15, 395, 453, 823
TscAI	CASTG	2 cut(s)	337, 778
TseFI	GTSAC	3 cut(s)	268, 433, 495
TseI	GCWGC	2 cut(s)	654, 785
Tsp45I	GTSAC	3 cut(s)	268, 433, 495
TspGWI	ACGGA	3 cut(s)	212, 321, 336
TspRI	CASTG	2 cut(s)	337, 778
Tth111I	GACNNNGTC	1 cut(s)	266
VspI	ATTAAT	1 cut(s)	453
XagI	CCTNNNNNAGG	1 cut(s)	143
XapI	RAATTY	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.