Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0014970

Physical Location & Seq

Genomic Coordinates Reverse (-)

4854141 .. 4855927

Gene Structure 1787 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00081900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGGAAGGCCACCTTGCTGTGATAAATCAAATGTGAAGAGGGGACTCTGGACGGCAGCCGAGGATGCGAAACTTCTTGCTTGCGTATCCAAACATGGAGTCGGAAATTGGACTGTGGTTCCTAAGAAAGCAGGAAGAACAGATAATGATGTGAAGAACTACTGGAATACCAAGCTGAAAAAGAAGCTTTCCAAGATAGGAATCGACCCTGTAACCCACAAACCCATCTCCCAGATCCTCTCTGACTATGGAAACATCACTAGCCTTCCAAACCACATCGGTAACCATTTTGGGCCATCCTTCAACAAGAAGTTGAACATGAGCACCACATTTGTACCTGAATCAGATCCATCTTCGGGGATCACAGGACTTGCTTACGCCAATATGATGATGATGAACCCCATTATGGAGTCACAAGACTATTCCTCTACTAGCACTCTTCCCTTCGGCCTTCTGTCTCAGTTTCAAGCAATGAATCAAGACAACAACGTTTCATTGCCTCCACACTTTTCGAATGAAGTAACTTCCTCTTGCTCATCATCATCTTCTCCTCCTGCTACTGATCTATTGAGCCCGCAATGTCACGCGTCTGCTCAAGTTGTCACACCGTCTTCTTCTCCTTTTAATTGGAGTGAGTTCCTTCTCCATGACCCTTTTTCATCCGCAGATCAACCCAAGCAAGAAGAAGTATTTCAAGGACTGCTGGCATCACCAGCCAATCCGACAGTTGGTAATGGAATTCAGTCTCAGGCATTTGAAGTTGGATCTTCATCAGTCATTAATGGAGGTCCAAGCTTGAACAACAACAAAAATTTGGCTAATGATCACATAGCTTCTTCTTCTTCATCTTCCTTGAGTTCATTTGTGGACACTATCTTAGGTCAAGATAGTGAGATGAGGGCAGCATTGTTCCCTGAACTTTTGGATGGATGTTTTGATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033036 GO:0033037 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051179 GO:0051252 GO:0051253 GO:0052545 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1900376 GO:1900377 GO:1901363 GO:1901700 GO:1902679 GO:1903085 GO:1903086 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

314

Amino Acids

33.71

Weight (kDa)

5.72

Isoelectric Point (pI)

56.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 57	2.9e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 66	4.2e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28470
fragaria_vesca	FvH4_6g49630
malus_domestica	MD09G1042900.v1.1 MD17G1044400.v1.1
prunus_persica	Prupe.3G274800_v2.0.a1
pyrus_communis	pycom111g03350
rosa_chinensis	RchiOBHm_Chr2g0169671
rosa_laevigata	RLG00000021893
rosa_multiflora	Rmu_co8425035.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081900
rosa_rugosa	Rorug02G0542000
rosa_samantha	Rh2AG614300 Rh2BG626500 Rh2CG595800 Rh2DG637400
rosa_wichuraiana	Rw2G050920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	587
AciI	CCGC	2 cut(s)	575, 663
AclI	AACGTT	1 cut(s)	489
AclWI	GGATC	4 cut(s)	229, 341, 368, 772
AcsI	RAATTY	2 cut(s)	738, 811
AfaI	GTAC	1 cut(s)	336
AfiI	CCNNNNNNNGG	3 cut(s)	356, 406, 728
AflIII	ACRYGT	1 cut(s)	585
AgsI	TTSAA	6 cut(s)	304, 316, 467, 695, 758, 799
AluBI	AGCT	4 cut(s)	175, 187, 795, 833
AluI	AGCT	4 cut(s)	175, 187, 795, 833
Alw21I	GWGCWC	1 cut(s)	326
Alw26I	GTCTC	2 cut(s)	462, 750
AlwI	GGATC	4 cut(s)	229, 341, 368, 772
AoxI	GGCC	3 cut(s)	8, 293, 448
ApeKI	GCWGC	2 cut(s)	56, 902
ApoI	RAATTY	2 cut(s)	738, 811
ArsI	GACNNNNNNTTYG	2 cut(s)	84, 116
AseI	ATTAAT	1 cut(s)	780
Asp700I	GAANNNNTTC	1 cut(s)	690
AspS9I	GGNCC	2 cut(s)	293, 788
AsuHPI	GGTGA	1 cut(s)	702
AsuII	TTCGAA	1 cut(s)	512
AvaII	GGWCC	1 cut(s)	788
BaeI	ACNNNNGTAYC	2 cut(s)	318, 351
BanII	GRGCYC	1 cut(s)	575
BbsI	GAAGAC	1 cut(s)	603
Bbv12I	GWGCWC	1 cut(s)	326
BbvI	GCAGC	2 cut(s)	68, 914
BccI	CCATC	4 cut(s)	233, 304, 358, 920
BceAI	ACGGC	1 cut(s)	69
BciVI	GTATCC	1 cut(s)	97
BclI	TGATCA	1 cut(s)	823
BcoDI	GTCTC	2 cut(s)	462, 750
BfaI	CTAG	2 cut(s)	261, 432
BfuI	GTATCC	1 cut(s)	97
BisI	GCNGC	2 cut(s)	57, 903
BlsI	GCNGC	2 cut(s)	58, 904
Bme18I	GGWCC	1 cut(s)	788
BmgT120I	GGNCC	2 cut(s)	293, 788
BmiI	GGNNCC	1 cut(s)	120
BmsI	GCATC	2 cut(s)	55, 716
BpiI	GAAGAC	1 cut(s)	603
Bpu14I	TTCGAA	1 cut(s)	512
BpuEI	CTTGAG	2 cut(s)	579, 874
BsaBI	GATNNNNATC	2 cut(s)	200, 769
BsaJI	CCNNGG	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	3 cut(s)	356, 406, 728
Bse1I	ACTGG	1 cut(s)	167
Bse3DI	GCAATG	3 cut(s)	477, 494, 584
Bse8I	GATNNNNATC	2 cut(s)	200, 769
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	5 cut(s)	70, 296, 659, 931, 935
BseJI	GATNNNNATC	2 cut(s)	200, 769
BseLI	CCNNNNNNNGG	3 cut(s)	356, 406, 728
BseMI	GCAATG	3 cut(s)	477, 494, 584
BseMII	CTCAG	2 cut(s)	473, 761
BseNI	ACTGG	1 cut(s)	167
BseRI	GAGGAG	1 cut(s)	540
BseXI	GCAGC	2 cut(s)	68, 914
Bsh1236I	CGCG	1 cut(s)	587
BshFI	GGCC	3 cut(s)	10, 295, 450
BsiHKAI	GWGCWC	1 cut(s)	326
BslFI	GGGAC	1 cut(s)	57
BslI	CCNNNNNNNGG	3 cut(s)	356, 406, 728
BsmAI	GTCTC	2 cut(s)	462, 750
BsmFI	GGGAC	1 cut(s)	57
BsnI	GGCC	3 cut(s)	10, 295, 450
Bsp119I	TTCGAA	1 cut(s)	512
Bsp1286I	GDGCHC	2 cut(s)	326, 575
Bsp143I	GATC	7 cut(s)	234, 346, 360, 562, 667, 764, 823
BspACI	CCGC	2 cut(s)	575, 663
BspANI	GGCC	3 cut(s)	10, 295, 450
BspCNI	CTCAG	2 cut(s)	472, 760
BspFNI	CGCG	1 cut(s)	587
BspLI	GGNNCC	1 cut(s)	120
BspPI	GGATC	4 cut(s)	229, 341, 368, 772
BspT104I	TTCGAA	1 cut(s)	512
BsrDI	GCAATG	3 cut(s)	477, 494, 584
BsrI	ACTGG	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	7 cut(s)	234, 346, 360, 562, 667, 764, 823
Bst4CI	ACNGT	3 cut(s)	115, 609, 727
Bst6I	CTCTTC	2 cut(s)	32, 444
BstBI	TTCGAA	1 cut(s)	512
BstC8I	GCNNGC	3 cut(s)	82, 575, 705
BstDEI	CTNAG	4 cut(s)	123, 459, 747, 877
BstEII	GGTNACC	1 cut(s)	281
BstF5I	GGATG	5 cut(s)	70, 296, 659, 931, 935
BstFNI	CGCG	1 cut(s)	587
BstKTI	GATC	7 cut(s)	237, 349, 363, 565, 670, 767, 826
BstMAI	GTCTC	2 cut(s)	462, 750
BstMBI	GATC	7 cut(s)	234, 346, 360, 562, 667, 764, 823
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 713
BstPI	GGTNACC	1 cut(s)	281
BstUI	CGCG	1 cut(s)	587
BstV1I	GCAGC	2 cut(s)	68, 914
BstV2I	GAAGAC	1 cut(s)	603
BstX2I	RGATCY	3 cut(s)	234, 346, 764
BstYI	RGATCY	3 cut(s)	234, 346, 764
BsuI	GTATCC	1 cut(s)	97
BsuRI	GGCC	3 cut(s)	10, 295, 450
BtsCI	GGATG	5 cut(s)	70, 296, 659, 931, 935
Cac8I	GCNNGC	3 cut(s)	82, 575, 705
Cfr13I	GGNCC	2 cut(s)	293, 788
CseI	GACGC	1 cut(s)	576
Csp6I	GTAC	1 cut(s)	335
CviAII	CATG	3 cut(s)	95, 319, 647
CviQI	GTAC	1 cut(s)	335
DdeI	CTNAG	4 cut(s)	123, 459, 747, 877
DpnI	GATC	7 cut(s)	236, 348, 362, 564, 669, 766, 825
DpnII	GATC	7 cut(s)	234, 346, 360, 562, 667, 764, 823
Eam1104I	CTCTTC	2 cut(s)	32, 444
EarI	CTCTTC	2 cut(s)	32, 444
Eco24I	GRGCYC	1 cut(s)	575
Eco47I	GGWCC	1 cut(s)	788
Eco91I	GGTNACC	1 cut(s)	281
EcoO65I	GGTNACC	1 cut(s)	281
EcoRI	GAATTC	1 cut(s)	738
EcoT38I	GRGCYC	1 cut(s)	575
FaeI	CATG	3 cut(s)	98, 322, 650
FaiI	YATR	7 cut(s)	96, 249, 320, 386, 407, 648, 830
FalI	AAGNNNNNCTT	1 cut(s)	30
FaqI	GGGAC	1 cut(s)	57
FatI	CATG	3 cut(s)	94, 318, 646
FauI	CCCGC	1 cut(s)	582
FbaI	TGATCA	1 cut(s)	823
Fnu4HI	GCNGC	2 cut(s)	57, 903
FokI	GGATG	4 cut(s)	77, 283, 646, 938
FriOI	GRGCYC	1 cut(s)	575
Fsp4HI	GCNGC	2 cut(s)	57, 903
FspBI	CTAG	2 cut(s)	261, 432
GluI	GCNGC	2 cut(s)	57, 903
HaeIII	GGCC	3 cut(s)	10, 295, 450
HgaI	GACGC	1 cut(s)	576
Hin1II	CATG	3 cut(s)	98, 322, 650
HindIII	AAGCTT	2 cut(s)	185, 793
HinfI	GANTC	6 cut(s)	45, 99, 201, 341, 410, 475
HphI	GGTGA	1 cut(s)	702
Hpy166II	GTNNAC	1 cut(s)	868
Hpy188I	TCNGA	4 cut(s)	104, 244, 346, 723
Hpy188III	TCNNGA	3 cut(s)	49, 479, 884
Hpy8I	GTNNAC	1 cut(s)	868
HpyAV	CCTTC	5 cut(s)	275, 310, 454, 461, 650
HpyCH4III	ACNGT	3 cut(s)	115, 609, 727
HpyCH4IV	ACGT	1 cut(s)	489
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 713
HpyF3I	CTNAG	4 cut(s)	123, 459, 747, 877
HpySE526I	ACGT	1 cut(s)	489
Hsp92II	CATG	3 cut(s)	98, 322, 650
Ksp22I	TGATCA	1 cut(s)	823
Kzo9I	GATC	7 cut(s)	234, 346, 360, 562, 667, 764, 823
Lsp1109I	GCAGC	2 cut(s)	68, 914
LweI	GCATC	2 cut(s)	55, 716
MaeI	CTAG	2 cut(s)	261, 432
MaeII	ACGT	1 cut(s)	489
MaeIII	GTNAC	6 cut(s)	211, 281, 411, 520, 581, 601
MalI	GATC	7 cut(s)	236, 348, 362, 564, 669, 766, 825
MboI	GATC	7 cut(s)	234, 346, 360, 562, 667, 764, 823
MflI	RGATCY	3 cut(s)	234, 346, 764
MhlI	GDGCHC	2 cut(s)	326, 575
MluCI	AATT	4 cut(s)	106, 625, 738, 811
MluI	ACGCGT	1 cut(s)	585
MlyI	GAGTC	3 cut(s)	39, 108, 419
MmeI	TCCRAC	3 cut(s)	82, 742, 746
MnlI	CCTC	9 cut(s)	33, 55, 248, 436, 510, 538, 561, 779, 891
MroXI	GAANNNNTTC	1 cut(s)	690
MseI	TTAA	2 cut(s)	624, 780
MvnI	CGCG	1 cut(s)	587
MwoI	GCNNNNNNNGC	2 cut(s)	65, 713
NdeII	GATC	7 cut(s)	234, 346, 360, 562, 667, 764, 823
NlaIII	CATG	3 cut(s)	98, 322, 650
NlaIV	GGNNCC	1 cut(s)	120
NmeAIII	GCCGAG	1 cut(s)	85
NmuCI	GTSAC	3 cut(s)	411, 581, 601
NspV	TTCGAA	1 cut(s)	512
PdmI	GAANNNNTTC	1 cut(s)	690
PfeI	GAWTC	3 cut(s)	201, 341, 475
PkrI	GCNGC	2 cut(s)	58, 904
PleI	GAGTC	3 cut(s)	39, 107, 418
PpsI	GAGTC	3 cut(s)	39, 107, 418
PshBI	ATTAAT	1 cut(s)	780
Psp1406I	AACGTT	1 cut(s)	489
PspEI	GGTNACC	1 cut(s)	281
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	2 cut(s)	293, 788
PsuI	RGATCY	3 cut(s)	234, 346, 764
RsaI	GTAC	1 cut(s)	336
RsaNI	GTAC	1 cut(s)	335
SaqAI	TTAA	2 cut(s)	624, 780
SatI	GCNGC	2 cut(s)	57, 903
Sau3AI	GATC	7 cut(s)	234, 346, 360, 562, 667, 764, 823
Sau96I	GGNCC	2 cut(s)	293, 788
SchI	GAGTC	3 cut(s)	39, 108, 419
SduI	GDGCHC	2 cut(s)	326, 575
SetI	ASST	9 cut(s)	16, 177, 189, 340, 492, 790, 797, 835, 883
SfaNI	GCATC	2 cut(s)	55, 716
SfuI	TTCGAA	1 cut(s)	512
SinI	GGWCC	1 cut(s)	788
SmlI	CTYRAG	2 cut(s)	594, 853
SmoI	CTYRAG	2 cut(s)	594, 853
Sse9I	AATT	4 cut(s)	106, 625, 738, 811
SsiI	CCGC	2 cut(s)	575, 663
SspMI	CTAG	2 cut(s)	261, 432
TaaI	ACNGT	3 cut(s)	115, 609, 727
TaiI	ACGT	1 cut(s)	492
TaqI	TCGA	2 cut(s)	204, 512
TasI	AATT	4 cut(s)	106, 625, 738, 811
TfiI	GAWTC	3 cut(s)	201, 341, 475
Tru1I	TTAA	2 cut(s)	624, 780
Tru9I	TTAA	2 cut(s)	624, 780
TseFI	GTSAC	3 cut(s)	411, 581, 601
TseI	GCWGC	2 cut(s)	56, 902
Tsp45I	GTSAC	3 cut(s)	411, 581, 601
TspDTI	ATGAA	8 cut(s)	410, 483, 488, 531, 648, 759, 834, 849
VpaK11BI	GGWCC	1 cut(s)	788
VspI	ATTAAT	1 cut(s)	780
XapI	RAATTY	2 cut(s)	738, 811
XmnI	GAANNNNTTC	1 cut(s)	690
XspI	CTAG	2 cut(s)	261, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.