Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0014970

Physical Location & Seq

Genomic Coordinates Reverse (-)

3229216 .. 3230961

Gene Structure 1746 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1044400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGGAAGGCCGCCTTGCTGCGATAAATCGAATGTGAAACGAGGCCTCTGGACTGCCGCAGAGGATGCAAAAATTCTTGCATATGTATCGAAATATGGTGTCGGAAATTGGACATTGGTTCCTAAAAAAGCAGGACTCAACAGATGTGGGAAGAGTTGCAGGCTTCGGTGGACTAATTACCTGAGGCCTGACCTCAAGCATGACAACTTCACTCCTCAAGAGGAACAACATATCATTAACCTTCACAAGGCCATCGGAAGCAGGTGGTCTCACATTGCCAAGCAACTACCAGGAAGAACAGACAATGACGTCAAAAACTACTGGAACACCAAGCTCAAAAAGAAGCTTTCCAAAATGGGAATTGACCCTGTCACCCACAAACCCTACTCCCAGATCCTCTCCGACTACGGAAACATCAGCGGCCTCCCAACCGCTGCCGGAAATCAATTATCGTACTTCTTTAAGTTCTCAAATAGGGCATTCGCACCCGAACCAGAGCCTTCTTCCGGCATCACAGGAATCCCATATACCCGTGTGATGATGAACCCTAATATTAATGGACAAGGATCAGAGCACAATTCCTGTGATAGCACACTTTCACTTGGCTTTTTGGCTCATCGGTTTCAAGAGAGTGTGCAAATTGAGCAGCCGCACTTTTTAAATGAAGTAACCTCCTCTTGCTCCTCATCATCCTCTCCTCGTGCCACAGATCATCAATTAATTTCTCAACCAACTTACGCGTGCCGGGAATCACACGAGGCTCAGGTTACGCCGTCTTCTTCTCCGTTTAACTGGAGTGAGTTTCTTCTCCATGATCCTTTTGCATCAGCTGATCCTTTTGCATCAGCTGATCATTTGAAGCAAGAACAAGATTTGCATGACGTGGTGATGTCAGCTTTAGAAAACCCTAAACTTGGAGTGCAAGGCAACTCTGATGCAATTGAGGGATGTGATTTCGGAGGTCAGAGGAGCAATGGCTTGCTTGATCAGCAAGCTTCTTCGTCTTCCATGAGTTCGTTTGTGGAGACTATCTTGGATCAAGACAGTGAGATGCAGGCAGCTTTTCCTCAACTTTTGGATGCTTCTTTCGATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033036 GO:0033037 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051179 GO:0051252 GO:0051253 GO:0052545 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1900376 GO:1900377 GO:1901363 GO:1901700 GO:1902679 GO:1903085 GO:1903086 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

366

Amino Acids

40.46

Weight (kDa)

6.22

Isoelectric Point (pI)

57.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	2.7e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 77	9.2e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	68 - 110	2.2e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 118	1.7e-10	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28470
fragaria_vesca	FvH4_6g49630
malus_domestica	MD09G1042900.v1.1 MD17G1044400.v1.1
prunus_persica	Prupe.3G274800_v2.0.a1
pyrus_communis	pycom111g03350
rosa_chinensis	RchiOBHm_Chr2g0169671
rosa_laevigata	RLG00000021893
rosa_multiflora	Rmu_co8425035.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081900
rosa_rugosa	Rorug02G0542000
rosa_samantha	Rh2AG614300 Rh2BG626500 Rh2CG595800 Rh2DG637400
rosa_wichuraiana	Rw2G050920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	252
AasI	GACNNNNNNGTC	1 cut(s)	308
AatII	GACGTC	1 cut(s)	312
Acc36I	ACCTGC	1 cut(s)	252
AccII	CGCG	1 cut(s)	740
AciI	CCGC	5 cut(s)	11, 57, 420, 432, 650
AclWI	GGATC	5 cut(s)	388, 574, 809, 827, 1044
AcsI	RAATTY	1 cut(s)	72
AcyI	GRCGYC	1 cut(s)	309
AfaI	GTAC	1 cut(s)	455
AfiI	CCNNNNNNNGG	3 cut(s)	247, 506, 914
AflIII	ACRYGT	1 cut(s)	738
AgsI	TTSAA	2 cut(s)	626, 859
AjiI	CACGTC	1 cut(s)	883
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	7 cut(s)	334, 346, 830, 848, 896, 995, 1061
AluI	AGCT	7 cut(s)	334, 346, 830, 848, 896, 995, 1061
Alw21I	GWGCWC	1 cut(s)	576
Alw26I	GTCTC	2 cut(s)	273, 1019
AlwI	GGATC	5 cut(s)	388, 574, 809, 827, 1044
AoxI	GGCC	5 cut(s)	8, 43, 185, 249, 421
ApeKI	GCWGC	4 cut(s)	18, 434, 646, 1058
ApoI	RAATTY	1 cut(s)	72
AseI	ATTAAT	2 cut(s)	555, 719
AsuC2I	CCSGG	1 cut(s)	746
AsuHPI	GGTGA	2 cut(s)	364, 898
AxyI	CCTNAGG	1 cut(s)	182
BauI	CACGAG	2 cut(s)	699, 755
BbsI	GAAGAC	2 cut(s)	768, 996
Bbv12I	GWGCWC	1 cut(s)	576
BbvI	GCAGC	4 cut(s)	5, 421, 658, 1070
BccI	CCATC	1 cut(s)	260
BceAI	ACGGC	1 cut(s)	757
BcgI	CGANNNNNNTGC	2 cut(s)	69, 103
BciT130I	CCWGG	1 cut(s)	291
BclI	TGATCA	2 cut(s)	850, 985
BcnI	CCSGG	1 cut(s)	746
BcoDI	GTCTC	2 cut(s)	273, 1019
BfuAI	ACCTGC	1 cut(s)	252
BisI	GCNGC	8 cut(s)	11, 19, 57, 421, 435, 647, 650, 1059
BlsI	GCNGC	8 cut(s)	12, 20, 58, 422, 436, 648, 651, 1060
Bme1390I	CCNGG	2 cut(s)	291, 746
BmgBI	CACGTC	1 cut(s)	883
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	2 cut(s)	291, 746
BmsI	GCATC	7 cut(s)	55, 519, 833, 851, 925, 1041, 1069
BpiI	GAAGAC	2 cut(s)	768, 996
BpmI	CTGGAG	1 cut(s)	814
Bpu10I	CCTNAGC	1 cut(s)	762
BpuEI	CTTGAG	2 cut(s)	179, 201
BpuMI	CCSGG	1 cut(s)	746
BsaHI	GRCGYC	1 cut(s)	309
BsaI	GGTCTC	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	3 cut(s)	247, 506, 914
Bse1I	ACTGG	2 cut(s)	326, 797
Bse21I	CCTNAGG	1 cut(s)	182
Bse3DI	GCAATG	2 cut(s)	273, 979
BseBI	CCWGG	1 cut(s)	291
BseGI	GGATG	4 cut(s)	70, 689, 953, 1084
BseLI	CCNNNNNNNGG	3 cut(s)	247, 506, 914
BseMI	GCAATG	2 cut(s)	273, 979
BseMII	CTCAG	2 cut(s)	173, 776
BseNI	ACTGG	2 cut(s)	326, 797
BseRI	GAGGAG	5 cut(s)	204, 664, 673, 687, 982
BseXI	GCAGC	4 cut(s)	5, 421, 658, 1070
Bsh1236I	CGCG	1 cut(s)	740
BshFI	GGCC	5 cut(s)	10, 45, 187, 251, 423
BsiHKAI	GWGCWC	1 cut(s)	576
BsiSI	CCGG	3 cut(s)	438, 507, 745
BslI	CCNNNNNNNGG	3 cut(s)	247, 506, 914
BsmAI	GTCTC	2 cut(s)	273, 1019
BsmI	GAATGC	1 cut(s)	479
BsnI	GGCC	5 cut(s)	10, 45, 187, 251, 423
Bso31I	GGTCTC	1 cut(s)	273
Bsp1286I	GDGCHC	1 cut(s)	576
Bsp143I	GATC	8 cut(s)	393, 566, 709, 814, 832, 850, 985, 1036
BspACI	CCGC	5 cut(s)	11, 57, 420, 432, 650
BspANI	GGCC	5 cut(s)	10, 45, 187, 251, 423
BspCNI	CTCAG	2 cut(s)	174, 775
BspFNI	CGCG	1 cut(s)	740
BspLI	GGNNCC	1 cut(s)	120
BspMI	ACCTGC	1 cut(s)	252
BspPI	GGATC	5 cut(s)	388, 574, 809, 827, 1044
BspTNI	GGTCTC	1 cut(s)	273
BsrDI	GCAATG	2 cut(s)	273, 979
BsrI	ACTGG	2 cut(s)	326, 797
BssMI	GATC	8 cut(s)	393, 566, 709, 814, 832, 850, 985, 1036
BssNI	GRCGYC	1 cut(s)	309
BssSI	CACGAG	2 cut(s)	699, 755
Bst2BI	CACGAG	2 cut(s)	699, 755
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	1 cut(s)	1046
Bst6I	CTCTTC	1 cut(s)	146
BstACI	GRCGYC	1 cut(s)	309
BstAPI	GCANNNNNTGC	1 cut(s)	65
BstC8I	GCNNGC	5 cut(s)	161, 742, 980, 993, 1056
BstDEI	CTNAG	2 cut(s)	182, 762
BstENI	CCTNNNNNAGG	1 cut(s)	245
BstF5I	GGATG	4 cut(s)	70, 689, 953, 1084
BstFNI	CGCG	1 cut(s)	740
BstKTI	GATC	8 cut(s)	396, 569, 712, 817, 835, 853, 988, 1039
BstMAI	GTCTC	2 cut(s)	273, 1019
BstMBI	GATC	8 cut(s)	393, 566, 709, 814, 832, 850, 985, 1036
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 643, 988
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	2 cut(s)	289, 744
BstUI	CGCG	1 cut(s)	740
BstV1I	GCAGC	4 cut(s)	5, 421, 658, 1070
BstV2I	GAAGAC	2 cut(s)	768, 996
BstX2I	RGATCY	1 cut(s)	393
BstYI	RGATCY	1 cut(s)	393
Bsu36I	CCTNAGG	1 cut(s)	182
BsuRI	GGCC	5 cut(s)	10, 45, 187, 251, 423
BtrI	CACGTC	1 cut(s)	883
BtsCI	GGATG	4 cut(s)	70, 689, 953, 1084
BtsIMutI	CAGTG	1 cut(s)	1051
BveI	ACCTGC	1 cut(s)	252
Cac8I	GCNNGC	5 cut(s)	161, 742, 980, 993, 1056
Csp6I	GTAC	1 cut(s)	454
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviAII	CATG	4 cut(s)	200, 812, 878, 1009
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	2 cut(s)	182, 762
DpnI	GATC	8 cut(s)	395, 568, 711, 816, 834, 852, 987, 1038
DpnII	GATC	8 cut(s)	393, 566, 709, 814, 832, 850, 985, 1036
DraI	TTTAAA	1 cut(s)	660
DrdI	GACNNNNNNGTC	1 cut(s)	308
DseDI	GACNNNNNNGTC	1 cut(s)	308
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Eco147I	AGGCCT	2 cut(s)	45, 187
Eco31I	GGTCTC	1 cut(s)	273
Eco81I	CCTNAGG	1 cut(s)	182
EcoNI	CCTNNNNNAGG	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	289
FaeI	CATG	4 cut(s)	203, 815, 881, 1012
FalI	AAGNNNNNCTT	1 cut(s)	30
FatI	CATG	4 cut(s)	199, 811, 877, 1008
FauNDI	CATATG	1 cut(s)	82
FbaI	TGATCA	2 cut(s)	850, 985
Fnu4HI	GCNGC	8 cut(s)	11, 19, 57, 421, 435, 647, 650, 1059
FokI	GGATG	4 cut(s)	77, 676, 960, 1091
Fsp4HI	GCNGC	8 cut(s)	11, 19, 57, 421, 435, 647, 650, 1059
GluI	GCNGC	8 cut(s)	11, 19, 57, 421, 435, 647, 650, 1059
GsuI	CTGGAG	1 cut(s)	814
HaeIII	GGCC	5 cut(s)	10, 45, 187, 251, 423
HapII	CCGG	3 cut(s)	438, 507, 745
Hin1I	GRCGYC	1 cut(s)	309
Hin1II	CATG	4 cut(s)	203, 815, 881, 1012
HindIII	AAGCTT	2 cut(s)	344, 993
HinfI	GANTC	3 cut(s)	135, 519, 749
HpaII	CCGG	3 cut(s)	438, 507, 745
HphI	GGTGA	2 cut(s)	364, 898
Hpy166II	GTNNAC	1 cut(s)	171
Hpy188I	TCNGA	7 cut(s)	104, 257, 403, 571, 934, 959, 966
Hpy188III	TCNNGA	4 cut(s)	49, 218, 626, 1040
Hpy8I	GTNNAC	1 cut(s)	171
HpyAV	CCTTC	2 cut(s)	251, 510
HpyCH4III	ACNGT	1 cut(s)	1046
HpyCH4IV	ACGT	2 cut(s)	309, 882
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 643, 988
HpyF3I	CTNAG	2 cut(s)	182, 762
HpySE526I	ACGT	2 cut(s)	309, 882
Hsp92I	GRCGYC	1 cut(s)	309
Hsp92II	CATG	4 cut(s)	203, 815, 881, 1012
Ksp22I	TGATCA	2 cut(s)	850, 985
Kzo9I	GATC	8 cut(s)	393, 566, 709, 814, 832, 850, 985, 1036
LmnI	GCTCC	2 cut(s)	686, 969
Lsp1109I	GCAGC	4 cut(s)	5, 421, 658, 1070
LweI	GCATC	7 cut(s)	55, 519, 833, 851, 925, 1041, 1069
MaeII	ACGT	2 cut(s)	309, 882
MaeIII	GTNAC	3 cut(s)	370, 667, 766
MalI	GATC	8 cut(s)	395, 568, 711, 816, 834, 852, 987, 1038
MboI	GATC	8 cut(s)	393, 566, 709, 814, 832, 850, 985, 1036
MboII	GAAGA	8 cut(s)	163, 306, 495, 768, 771, 797, 990, 996
MfeI	CAATTG	1 cut(s)	939
MflI	RGATCY	1 cut(s)	393
MhlI	GDGCHC	1 cut(s)	576
MluI	ACGCGT	1 cut(s)	738
MlyI	GAGTC	1 cut(s)	129
MmeI	TCCRAC	2 cut(s)	82, 426
MseI	TTAA	7 cut(s)	237, 462, 555, 659, 719, 789, 1096
MspA1I	CMGCKG	4 cut(s)	420, 434, 830, 848
MspI	CCGG	3 cut(s)	438, 507, 745
MspR9I	CCNGG	2 cut(s)	291, 746
MunI	CAATTG	1 cut(s)	939
Mva1269I	GAATGC	1 cut(s)	479
MvaI	CCWGG	1 cut(s)	291
MvnI	CGCG	1 cut(s)	740
MwoI	GCNNNNNNNGC	3 cut(s)	65, 643, 988
NciI	CCSGG	1 cut(s)	746
NdeI	CATATG	1 cut(s)	82
NdeII	GATC	8 cut(s)	393, 566, 709, 814, 832, 850, 985, 1036
NlaIII	CATG	4 cut(s)	203, 815, 881, 1012
NlaIV	GGNNCC	1 cut(s)	120
NmuCI	GTSAC	1 cut(s)	370
PaqCI	CACCTGC	1 cut(s)	252
PceI	AGGCCT	2 cut(s)	45, 187
PctI	GAATGC	1 cut(s)	479
PfeI	GAWTC	2 cut(s)	519, 749
PflFI	GACNNNGTC	1 cut(s)	368
PkrI	GCNGC	8 cut(s)	12, 20, 58, 422, 436, 648, 651, 1060
PleI	GAGTC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	129
PshBI	ATTAAT	2 cut(s)	555, 719
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	1 cut(s)	120
PsuI	RGATCY	1 cut(s)	393
PsyI	GACNNNGTC	1 cut(s)	368
PvuII	CAGCTG	2 cut(s)	830, 848
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
SaqAI	TTAA	7 cut(s)	237, 462, 555, 659, 719, 789, 1096
SatI	GCNGC	8 cut(s)	11, 19, 57, 421, 435, 647, 650, 1059
Sau3AI	GATC	8 cut(s)	393, 566, 709, 814, 832, 850, 985, 1036
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	2 cut(s)	291, 746
SduI	GDGCHC	1 cut(s)	576
SfaNI	GCATC	7 cut(s)	55, 519, 833, 851, 925, 1041, 1069
SmlI	CTYRAG	2 cut(s)	194, 216
SmoI	CTYRAG	2 cut(s)	194, 216
SseBI	AGGCCT	2 cut(s)	45, 187
SsiI	CCGC	5 cut(s)	11, 57, 420, 432, 650
SspI	AATATT	1 cut(s)	553
StuI	AGGCCT	2 cut(s)	45, 187
StyD4I	CCNGG	2 cut(s)	289, 744
TaaI	ACNGT	1 cut(s)	1046
TaiI	ACGT	2 cut(s)	312, 885
TaqI	TCGA	3 cut(s)	29, 89, 1089
TauI	GCSGC	4 cut(s)	13, 59, 423, 652
TfiI	GAWTC	2 cut(s)	519, 749
Tru1I	TTAA	7 cut(s)	237, 462, 555, 659, 719, 789, 1096
Tru9I	TTAA	7 cut(s)	237, 462, 555, 659, 719, 789, 1096
TscAI	CASTG	1 cut(s)	1051
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	4 cut(s)	18, 434, 646, 1058
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	2 cut(s)	557, 678
TspGWI	ACGGA	2 cut(s)	423, 774
TspRI	CASTG	1 cut(s)	1051
Tth111I	GACNNNGTC	1 cut(s)	368
VspI	ATTAAT	2 cut(s)	555, 719
XagI	CCTNNNNNAGG	1 cut(s)	245
XapI	RAATTY	1 cut(s)	72
ZraI	GACGTC	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.