Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0014970

Physical Location & Seq

Genomic Coordinates Forward (+)

25367522 .. 25369548

Gene Structure 2027 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G274800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGGAAGGCCACCTTGCTGCGATAAATCAAACGTGAAAAGAGGCATCTGGACTGCAGCAGAGGATGCCAAACTTCTTGCATACATTTCGAAACACGGAGTTGGAAATTGGACTTTGGTTCCAAAGAAAGCAGGACTTAATAGATGCGGGAAGAGCTGCAGGCTTAGGTGGACTAATTACCTGAGGCCTGACCTCATACATGACAGCTTCACTCCTCAAGAGGAAGAGCATATTATTAACCTTCATGAGGCTATAGGCAGCAGGTGGTCCCTCATTGCAAAGCTACTACCCGGAAGAACAGATAATGATGTCAAAAACTACTGGAACACTAAGTTGAAAAAGAAGCTTTCCAAAATGGGAATTGACCCTGTAACCCATAAACCTTTTTCTCAGATCCTCTCTGACTATGGAAACATCAGCAGCCTCCCAAGCATCGATAATCAATTCGGGTCCTTTTTAAAGAACTTGAACAACACGTTCGTGCCCAAATCAGAGCCGTCTTCAGGCATCACAGGACTGCCCTTGGGCGTCAACACATATTCCAATATGATGATGAACCCTATAGGATCAGACAATTCCACTGCTAGCACTCTTTCATTGGGTATTGTGGCTCAGTTTCAAGAAATCAATCAAGACAGTGTGCAAGTGCAACCACACTTTTTGAATGAAGTAGCTTCCTCTTGTTCATCATCATCTCCTCCTCATGCCACTGATCATCAATTAAGCTCTCAGCCAACTTACTTGTGCCAGCAATCTCATCATGAGGCTCAAATTACACCATCTTCTTCCTTTAACTGGAGTGAATTTCTTCTGCATGAACCCTTTTCGTCAGCTGATGAACTCAAGCAAGAACAAGATTTCCATGGAACAATGATGTCATCCTCATCAGCTCTTCCCACACTTGCTGGTGGAAGTGAACACAACTTGAAGGCAACAACTCAGGCATGTGATTTTGGATCATCAGCCATTAATATTGGAGGCCAAAGGAACAATAACTTGGCTCATGATCAAGCTTCTTCATCTTCCATGACTTCTTTTGTGGATACTATCTTGGGTCAAGATAGTGAGATGCAGGCAGCGTTTCCTGAACTTCTAGATGCTTCTTTCGATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009555 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033036 GO:0033037 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051179 GO:0051252 GO:0051253 GO:0052545 GO:0055046 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1900376 GO:1900377 GO:1901363 GO:1901700 GO:1902679 GO:1903085 GO:1903086 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

372

Amino Acids

40.67

Weight (kDa)

5.94

Isoelectric Point (pI)

50.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014970)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28470
fragaria_vesca	FvH4_6g49630
malus_domestica	MD09G1042900.v1.1 MD17G1044400.v1.1
prunus_persica	Prupe.3G274800_v2.0.a1
pyrus_communis	pycom111g03350
rosa_chinensis	RchiOBHm_Chr2g0169671
rosa_laevigata	RLG00000021893
rosa_multiflora	Rmu_co8425035.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081900
rosa_rugosa	Rorug02G0542000
rosa_samantha	Rh2AG614300 Rh2BG626500 Rh2CG595800 Rh2DG637400
rosa_wichuraiana	Rw2G050920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	252
Acc36I	ACCTGC	1 cut(s)	252
AciI	CCGC	1 cut(s)	147
AclWI	GGATC	3 cut(s)	388, 574, 964
AcsI	RAATTY	1 cut(s)	803
AcuI	CTGAAG	1 cut(s)	486
AcyI	GRCGYC	1 cut(s)	528
AfiI	CCNNNNNNNGG	3 cut(s)	247, 503, 795
AflIII	ACRYGT	1 cut(s)	474
AgsI	TTSAA	5 cut(s)	337, 469, 620, 664, 928
AjuI	GAANNNNNNNTTGG	2 cut(s)	980, 1012
AleI	CACNNNNGTG	1 cut(s)	479
AloI	GAACNNNNNNTCC	2 cut(s)	843, 875
AluBI	AGCT	9 cut(s)	156, 207, 283, 346, 674, 726, 833, 890, 1013
AluI	AGCT	9 cut(s)	156, 207, 283, 346, 674, 726, 833, 890, 1013
AlwI	GGATC	3 cut(s)	388, 574, 964
AoxI	GGCC	3 cut(s)	8, 185, 979
ApeKI	GCWGC	6 cut(s)	18, 56, 156, 258, 420, 1076
ApoI	RAATTY	1 cut(s)	803
AseI	ATTAAT	1 cut(s)	969
Asp700I	GAANNNNTTC	1 cut(s)	807
AspS9I	GGNCC	2 cut(s)	267, 450
AsuC2I	CCSGG	1 cut(s)	291
AsuII	TTCGAA	1 cut(s)	89
AsuNHI	GCTAGC	1 cut(s)	584
AvaII	GGWCC	2 cut(s)	267, 450
AxyI	CCTNAGG	1 cut(s)	182
BaeGI	GKGCMC	1 cut(s)	486
BbsI	GAAGAC	1 cut(s)	492
BbvI	GCAGC	6 cut(s)	5, 68, 143, 270, 432, 1088
BccI	CCATC	1 cut(s)	787
BceAI	ACGGC	1 cut(s)	481
BcgI	CGANNNNNNTGC	2 cut(s)	69, 103
BciVI	GTATCC	1 cut(s)	1036
BclI	TGATCA	2 cut(s)	712, 1006
BcnI	CCSGG	1 cut(s)	291
BfaI	CTAG	2 cut(s)	585, 1094
BfmI	CTRYAG	4 cut(s)	54, 157, 252, 561
BfuAI	ACCTGC	1 cut(s)	252
BfuI	GTATCC	1 cut(s)	1036
BisI	GCNGC	6 cut(s)	19, 57, 157, 259, 421, 1077
BlsI	GCNGC	6 cut(s)	20, 58, 158, 260, 422, 1078
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	2 cut(s)	267, 450
BmgT120I	GGNCC	2 cut(s)	267, 450
BmiI	GGNNCC	3 cut(s)	120, 269, 451
BmrFI	CCNGG	1 cut(s)	291
BmsI	GCATC	7 cut(s)	54, 55, 134, 441, 516, 1059, 1087
BmtI	GCTAGC	1 cut(s)	588
BpiI	GAAGAC	1 cut(s)	492
BpmI	CTGGAG	1 cut(s)	817
Bpu10I	CCTNAGC	1 cut(s)	164
Bpu14I	TTCGAA	1 cut(s)	89
BpuEI	CTTGAG	2 cut(s)	201, 827
BpuMI	CCSGG	1 cut(s)	291
Bsa29I	ATCGAT	1 cut(s)	435
BsaHI	GRCGYC	1 cut(s)	528
BsaJI	CCNNGG	2 cut(s)	522, 862
Bsc4I	CCNNNNNNNGG	3 cut(s)	247, 503, 795
Bse1I	ACTGG	2 cut(s)	326, 800
Bse21I	CCTNAGG	1 cut(s)	182
Bse3DI	GCAATG	1 cut(s)	273
BseCI	ATCGAT	1 cut(s)	435
BseDI	CCNNGG	2 cut(s)	522, 862
BseGI	GGATG	2 cut(s)	70, 878
BseLI	CCNNNNNNNGG	3 cut(s)	247, 503, 795
BseMI	GCAATG	1 cut(s)	273
BseMII	CTCAG	5 cut(s)	173, 404, 626, 743, 953
BseNI	ACTGG	2 cut(s)	326, 800
BseRI	GAGGAG	3 cut(s)	204, 687, 690
BseSI	GKGCMC	1 cut(s)	486
BseXI	GCAGC	6 cut(s)	5, 68, 143, 270, 432, 1088
BshFI	GGCC	3 cut(s)	10, 187, 981
BshVI	ATCGAT	1 cut(s)	435
BsiSI	CCGG	1 cut(s)	291
BslFI	GGGAC	1 cut(s)	253
BslI	CCNNNNNNNGG	3 cut(s)	247, 503, 795
BsmFI	GGGAC	1 cut(s)	253
BsnI	GGCC	3 cut(s)	10, 187, 981
Bsp119I	TTCGAA	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	486
Bsp143I	GATC	5 cut(s)	393, 566, 712, 956, 1006
Bsp19I	CCATGG	1 cut(s)	862
BspACI	CCGC	1 cut(s)	147
BspANI	GGCC	3 cut(s)	10, 187, 981
BspCNI	CTCAG	5 cut(s)	174, 403, 625, 742, 952
BspDI	ATCGAT	1 cut(s)	435
BspHI	TCATGA	3 cut(s)	244, 760, 1003
BspLI	GGNNCC	3 cut(s)	120, 269, 451
BspMAI	CTGCAG	2 cut(s)	58, 161
BspMI	ACCTGC	1 cut(s)	252
BspOI	GCTAGC	1 cut(s)	588
BspPI	GGATC	3 cut(s)	388, 574, 964
BspQI	GCTCTTC	3 cut(s)	146, 219, 897
BspT104I	TTCGAA	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	273
BsrI	ACTGG	2 cut(s)	326, 800
BssECI	CCNNGG	2 cut(s)	522, 862
BssMI	GATC	5 cut(s)	393, 566, 712, 956, 1006
BssNI	GRCGYC	1 cut(s)	528
BssT1I	CCWWGG	2 cut(s)	522, 862
Bst4CI	ACNGT	1 cut(s)	638
Bst6I	CTCTTC	3 cut(s)	146, 219, 897
BstACI	GRCGYC	1 cut(s)	528
BstAPI	GCANNNNNTGC	1 cut(s)	65
BstBI	TTCGAA	1 cut(s)	89
BstC8I	GCNNGC	4 cut(s)	161, 586, 749, 1074
BstDEI	CTNAG	7 cut(s)	164, 182, 330, 390, 612, 729, 939
BstDSI	CCRYGG	1 cut(s)	862
BstENI	CCTNNNNNAGG	1 cut(s)	245
BstF5I	GGATG	2 cut(s)	70, 878
BstKTI	GATC	5 cut(s)	396, 569, 715, 959, 1009
BstMBI	GATC	5 cut(s)	393, 566, 712, 956, 1006
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 153, 429
BstNSI	RCATGY	1 cut(s)	948
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	4 cut(s)	54, 157, 252, 561
BstSLI	GKGCMC	1 cut(s)	486
BstV1I	GCAGC	6 cut(s)	5, 68, 143, 270, 432, 1088
BstV2I	GAAGAC	1 cut(s)	492
BstX2I	RGATCY	1 cut(s)	393
BstYI	RGATCY	1 cut(s)	393
Bsu15I	ATCGAT	1 cut(s)	435
Bsu36I	CCTNAGG	1 cut(s)	182
BsuI	GTATCC	1 cut(s)	1036
BsuRI	GGCC	3 cut(s)	10, 187, 981
BsuTUI	ATCGAT	1 cut(s)	435
BtgI	CCRYGG	1 cut(s)	862
BtsCI	GGATG	2 cut(s)	70, 878
BtsI	GCAGTG	1 cut(s)	579
BtsIMutI	CAGTG	3 cut(s)	579, 643, 708
BveI	ACCTGC	1 cut(s)	252
Cac8I	GCNNGC	4 cut(s)	161, 586, 749, 1074
CciI	TCATGA	3 cut(s)	244, 760, 1003
Cfr13I	GGNCC	2 cut(s)	267, 450
ClaI	ATCGAT	1 cut(s)	435
CseI	GACGC	1 cut(s)	517
CspCI	CAANNNNNGTGG	2 cut(s)	642, 677
CviAII	CATG	9 cut(s)	200, 245, 704, 761, 815, 863, 945, 1004, 1027
DdeI	CTNAG	7 cut(s)	164, 182, 330, 390, 612, 729, 939
DpnI	GATC	5 cut(s)	395, 568, 714, 958, 1008
DpnII	GATC	5 cut(s)	393, 566, 712, 956, 1006
DraI	TTTAAA	1 cut(s)	459
Eam1104I	CTCTTC	3 cut(s)	146, 219, 897
EarI	CTCTTC	3 cut(s)	146, 219, 897
Eco130I	CCWWGG	2 cut(s)	522, 862
Eco147I	AGGCCT	1 cut(s)	187
Eco47I	GGWCC	2 cut(s)	267, 450
Eco57I	CTGAAG	1 cut(s)	486
Eco81I	CCTNAGG	1 cut(s)	182
EcoNI	CCTNNNNNAGG	1 cut(s)	245
EcoO109I	RGGNCCY	1 cut(s)	450
EcoT14I	CCWWGG	2 cut(s)	522, 862
ErhI	CCWWGG	2 cut(s)	522, 862
FaeI	CATG	9 cut(s)	203, 248, 707, 764, 818, 866, 948, 1007, 1030
FalI	AAGNNNNNCTT	3 cut(s)	30, 120, 152
FaqI	GGGAC	1 cut(s)	253
FatI	CATG	9 cut(s)	199, 244, 703, 760, 814, 862, 944, 1003, 1026
FauI	CCCGC	1 cut(s)	140
FbaI	TGATCA	2 cut(s)	712, 1006
Fnu4HI	GCNGC	6 cut(s)	19, 57, 157, 259, 421, 1077
FokI	GGATG	2 cut(s)	77, 865
Fsp4HI	GCNGC	6 cut(s)	19, 57, 157, 259, 421, 1077
FspBI	CTAG	2 cut(s)	585, 1094
GluI	GCNGC	6 cut(s)	19, 57, 157, 259, 421, 1077
GsuI	CTGGAG	1 cut(s)	817
HaeIII	GGCC	3 cut(s)	10, 187, 981
HapII	CCGG	1 cut(s)	291
HgaI	GACGC	1 cut(s)	517
Hin1I	GRCGYC	1 cut(s)	528
Hin1II	CATG	9 cut(s)	203, 248, 707, 764, 818, 866, 948, 1007, 1030
HincII	GTYRAC	1 cut(s)	532
HindII	GTYRAC	1 cut(s)	532
HindIII	AAGCTT	2 cut(s)	344, 1011
HpaII	CCGG	1 cut(s)	291
Hpy166II	GTNNAC	3 cut(s)	171, 532, 917
Hpy188I	TCNGA	4 cut(s)	393, 403, 493, 571
Hpy8I	GTNNAC	3 cut(s)	171, 532, 917
HpyAV	CCTTC	2 cut(s)	251, 922
HpyCH4III	ACNGT	1 cut(s)	638
HpyCH4IV	ACGT	2 cut(s)	33, 476
HpyCH4V	TGCA	8 cut(s)	56, 80, 159, 278, 643, 649, 814, 1072
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 153, 429
HpyF3I	CTNAG	7 cut(s)	164, 182, 330, 390, 612, 729, 939
HpySE526I	ACGT	2 cut(s)	33, 476
Hsp92I	GRCGYC	1 cut(s)	528
Hsp92II	CATG	9 cut(s)	203, 248, 707, 764, 818, 866, 948, 1007, 1030
Ksp22I	TGATCA	2 cut(s)	712, 1006
Kzo9I	GATC	5 cut(s)	393, 566, 712, 956, 1006
LguI	GCTCTTC	3 cut(s)	146, 219, 897
Lsp1109I	GCAGC	6 cut(s)	5, 68, 143, 270, 432, 1088
LweI	GCATC	7 cut(s)	54, 55, 134, 441, 516, 1059, 1087
MaeI	CTAG	2 cut(s)	585, 1094
MaeII	ACGT	2 cut(s)	33, 476
MaeIII	GTNAC	1 cut(s)	370
MalI	GATC	5 cut(s)	395, 568, 714, 958, 1008
MboI	GATC	5 cut(s)	393, 566, 712, 956, 1006
MflI	RGATCY	1 cut(s)	393
MhlI	GDGCHC	1 cut(s)	486
MluCI	AATT	8 cut(s)	106, 175, 360, 443, 574, 719, 771, 803
MmeI	TCCRAC	1 cut(s)	82
MroXI	GAANNNNTTC	1 cut(s)	807
MseI	TTAA	7 cut(s)	138, 237, 458, 722, 792, 969, 1114
MslI	CAYNNNNRTG	1 cut(s)	479
MspA1I	CMGCKG	1 cut(s)	833
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	3 cut(s)	65, 153, 429
NciI	CCSGG	1 cut(s)	291
NcoI	CCATGG	1 cut(s)	862
NdeII	GATC	5 cut(s)	393, 566, 712, 956, 1006
NheI	GCTAGC	1 cut(s)	584
NlaIII	CATG	9 cut(s)	203, 248, 707, 764, 818, 866, 948, 1007, 1030
NlaIV	GGNNCC	3 cut(s)	120, 269, 451
NspI	RCATGY	1 cut(s)	948
NspV	TTCGAA	1 cut(s)	89
OliI	CACNNNNGTG	1 cut(s)	479
PagI	TCATGA	3 cut(s)	244, 760, 1003
PaqCI	CACCTGC	1 cut(s)	252
PceI	AGGCCT	1 cut(s)	187
PciSI	GCTCTTC	3 cut(s)	146, 219, 897
PdmI	GAANNNNTTC	1 cut(s)	807
PkrI	GCNGC	6 cut(s)	20, 58, 158, 260, 422, 1078
PpuMI	RGGWCCY	1 cut(s)	450
PshBI	ATTAAT	1 cut(s)	969
Psp5II	RGGWCCY	1 cut(s)	450
PspN4I	GGNNCC	3 cut(s)	120, 269, 451
PspPI	GGNCC	2 cut(s)	267, 450
PspPPI	RGGWCCY	1 cut(s)	450
PstI	CTGCAG	2 cut(s)	58, 161
PsuI	RGATCY	1 cut(s)	393
PvuII	CAGCTG	1 cut(s)	833
RseI	CAYNNNNRTG	1 cut(s)	479
SapI	GCTCTTC	3 cut(s)	146, 219, 897
SaqAI	TTAA	7 cut(s)	138, 237, 458, 722, 792, 969, 1114
SatI	GCNGC	6 cut(s)	19, 57, 157, 259, 421, 1077
Sau3AI	GATC	5 cut(s)	393, 566, 712, 956, 1006
Sau96I	GGNCC	2 cut(s)	267, 450
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	1 cut(s)	486
SfaNI	GCATC	7 cut(s)	54, 55, 134, 441, 516, 1059, 1087
SfcI	CTRYAG	4 cut(s)	54, 157, 252, 561
SfuI	TTCGAA	1 cut(s)	89
SinI	GGWCC	2 cut(s)	267, 450
SmiMI	CAYNNNNRTG	1 cut(s)	479
SmlI	CTYRAG	2 cut(s)	216, 842
SmoI	CTYRAG	2 cut(s)	216, 842
Sse9I	AATT	8 cut(s)	106, 175, 360, 443, 574, 719, 771, 803
SseBI	AGGCCT	1 cut(s)	187
SsiI	CCGC	1 cut(s)	147
SspI	AATATT	1 cut(s)	973
SspMI	CTAG	2 cut(s)	585, 1094
StuI	AGGCCT	1 cut(s)	187
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	2 cut(s)	522, 862
TaaI	ACNGT	1 cut(s)	638
TaiI	ACGT	2 cut(s)	36, 479
TaqI	TCGA	3 cut(s)	89, 435, 1107
TasI	AATT	8 cut(s)	106, 175, 360, 443, 574, 719, 771, 803
Tru1I	TTAA	7 cut(s)	138, 237, 458, 722, 792, 969, 1114
Tru9I	TTAA	7 cut(s)	138, 237, 458, 722, 792, 969, 1114
TscAI	CASTG	3 cut(s)	586, 643, 715
TseI	GCWGC	6 cut(s)	18, 56, 156, 258, 420, 1076
TspDTI	ATGAA	8 cut(s)	233, 569, 585, 675, 681, 831, 852, 1008
TspGWI	ACGGA	1 cut(s)	111
TspRI	CASTG	3 cut(s)	586, 643, 715
VpaK11BI	GGWCC	2 cut(s)	267, 450
VspI	ATTAAT	1 cut(s)	969
XagI	CCTNNNNNAGG	1 cut(s)	245
XapI	RAATTY	1 cut(s)	803
XbaI	TCTAGA	1 cut(s)	1093
XceI	RCATGY	1 cut(s)	948
XmnI	GAANNNNTTC	1 cut(s)	807
XspI	CTAG	2 cut(s)	585, 1094

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.