Rw2G050920
MYB Family

transcription

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
78625504 .. 78627539
2036 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G050920.1

Sequence Viewer

Length: 1314 bp
ATGCAATTCTGTGATGTCATGTTAAACCGTTTTCTAAGAGATGAAAATGTTCATGCAATTCTGGTTAACTGGGAGCCAAATGGCGCATGCATTTCTTGCTTCTTCTCTTTGCTAAACAAAACCCTTCCCTTTCTTCATTTTAAATGCACTGGCAAACTAGCATCACCATTACATAATAATAATATTCACCTTAATTCACATCCCTCTCCTTTTCTCTTCCCCTCTGAGATTCTCTCTCAAAATGGGAAGAGGGGACTCTGGACTGCAGCCGAGGATGCGAAACTTCTTGCTTGCGTATCCAAACATGGAGTCGGAAATTGGACTGTGGTTCCTAAGAAAGCAGGATTGAACAGATGTGGGAAGAGCTGCAGGCTTAGGTGGACTAATTACCTCAGGCCTGACCTCAAGCATGACACCTTCACTCCTGAAGAGGAAGAGCATATTATCAACCTTCATAAGGCTATAGGAAGCAGGTGGTCTCTGATTGCAAAGCAACTACCAGGAAGAACAGATAATGATGTGAAGAACTACTGGAATACCAAGCTGAAAAAGAAGCTTTCCAAGATAGGAATCGACCCTGTAACCCACAAACCCATCTCCCAGATCCTCTCTGACTATGGAAACATCACTAGCCTTCCAAAGCACATCGGTAACCATTTTGGGCCATCCTTCAACAACAAGTTGAACATGAGCACCACATTTGTACCTGAATCAGATCCATCTTCGGGGATCACAGGACTTGCATACACCAATATGATGATGATGAACCCCATTATGGAGTCACAAGACTATTCCTCTACCAGCACTCTTCCCTTCGGCTTTCTGTCTCAGTTTCAAGCAATGAATCAAGACGACAATGTTTCATTGCCTCCACACTTTTCGAATGAAGTAACTTCCTCTTGCTCATCATCATCTTCTCCTCCTGCTACTGATCTATTGAGCCCGCAATGTCACGCGTCTGCACAAGTTGTCACACCGTCTTCTTCTCCTTTTAATTGGAGTGAGTTCCTTCTCCATGACCCTTTTTCATCCGCAGATCAACCCAAGCAAGAAGAAGTATTTCAAGGACTGCTGGCATCACCAGCCAATCCGACAGTTGGTAATGGAATTCAGTCTCAGGCATTTGAAGTTGGATCTTCATCAGTCATTAATGGAGGTCCAAGCTTGAACAACAACAAAAATTTGGCTAATGATCAAATAGCTTCTTCTTCTTCATCTTCCTTGAGTTCATTTGTGGACACTATCTTAGGTCAAGATAGTGAGATGAGGGCAGCATTGTTCCCTGAACTTTTGGATGGATGTTTTGATTACTAA

Protein Analysis

437

Amino Acids

48.03

Weight (kDa)

6.3

Isoelectric Point (pI)

59.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 84 - 131 3.8e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 87 - 147 4.8e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 139 - 180 1.1e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 140 - 189 7.7e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014970)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28470
fragaria_vesca FvH4_6g49630
malus_domestica MD09G1042900.v1.1 MD17G1044400.v1.1
prunus_persica Prupe.3G274800_v2.0.a1
pyrus_communis pycom111g03350
rosa_chinensis RchiOBHm_Chr2g0169671
rosa_laevigata RLG00000021893
rosa_multiflora Rmu_co8425035.1_g000001
rosa_roxburghii Rroxscaffold_2G00081900
rosa_rugosa Rorug02G0542000
rosa_samantha Rh2AG614300 Rh2BG626500 Rh2CG595800 Rh2DG637400
rosa_wichuraiana Rw2G050920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 462
Acc36I ACCTGC 1 cut(s) 462
AccII CGCG 1 cut(s) 956
AciI CCGC 2 cut(s) 944, 1032
AclWI GGATC 4 cut(s) 598, 710, 737, 1141
AcsI RAATTY 2 cut(s) 1107, 1180
AcuI CTGAAG 1 cut(s) 447
AfaI GTAC 1 cut(s) 705
AfiI CCNNNNNNNGG 4 cut(s) 457, 725, 775, 1097
AflIII ACRYGT 1 cut(s) 954
AgsI TTSAA 7 cut(s) 349, 673, 685, 836, 1064, 1127, 1168
AjnI CCWGG 1 cut(s) 499
AluBI AGCT 5 cut(s) 366, 544, 556, 1164, 1202
AluI AGCT 5 cut(s) 366, 544, 556, 1164, 1202
Alw21I GWGCWC 1 cut(s) 695
Alw26I GTCTC 3 cut(s) 483, 831, 1119
AlwI GGATC 4 cut(s) 598, 710, 737, 1141
AoxI GGCC 2 cut(s) 395, 662
ApeKI GCWGC 3 cut(s) 266, 366, 1271
ApoI RAATTY 2 cut(s) 1107, 1180
ArsI GACNNNNNNTTYG 2 cut(s) 294, 326
AseI ATTAAT 1 cut(s) 1149
Asp700I GAANNNNTTC 2 cut(s) 48, 1059
AspLEI GCGC 1 cut(s) 86
AspS9I GGNCC 2 cut(s) 662, 1157
AsuHPI GGTGA 3 cut(s) 156, 179, 1071
AsuII TTCGAA 1 cut(s) 881
AvaII GGWCC 1 cut(s) 1157
AxyI CCTNAGG 1 cut(s) 392
BaeI ACNNNNGTAYC 2 cut(s) 687, 720
BanII GRGCYC 1 cut(s) 944
BbsI GAAGAC 1 cut(s) 972
Bbv12I GWGCWC 1 cut(s) 695
BbvI GCAGC 3 cut(s) 278, 353, 1283
BccI CCATC 4 cut(s) 602, 673, 727, 1289
BciT130I CCWGG 1 cut(s) 501
BciVI GTATCC 1 cut(s) 307
BclI TGATCA 1 cut(s) 1192
BcoDI GTCTC 3 cut(s) 483, 831, 1119
BfaI CTAG 2 cut(s) 158, 630
BfmI CTRYAG 3 cut(s) 264, 367, 462
BfuAI ACCTGC 1 cut(s) 462
BfuI GTATCC 1 cut(s) 307
BisI GCNGC 3 cut(s) 267, 367, 1272
BlsI GCNGC 3 cut(s) 268, 368, 1273
Bme1390I CCNGG 1 cut(s) 501
Bme18I GGWCC 1 cut(s) 1157
BmgT120I GGNCC 2 cut(s) 662, 1157
BmiI GGNNCC 2 cut(s) 75, 330
BmrFI CCNGG 1 cut(s) 501
BmrI ACTGGG 1 cut(s) 79
BmsI GCATC 3 cut(s) 170, 265, 1085
BmuI ACTGGG 1 cut(s) 79
BpiI GAAGAC 1 cut(s) 972
BplI GAGNNNNNCTC 2 cut(s) 218, 250
Bpu10I CCTNAGC 1 cut(s) 374
Bpu14I TTCGAA 1 cut(s) 881
BpuEI CTTGAG 2 cut(s) 389, 1243
BsaBI GATNNNNATC 2 cut(s) 569, 1138
BsaI GGTCTC 1 cut(s) 483
BsaJI CCNNGG 1 cut(s) 270
BsaXI ACNNNNNCTCC 2 cut(s) 406, 436
Bsc4I CCNNNNNNNGG 4 cut(s) 457, 725, 775, 1097
Bse1I ACTGG 3 cut(s) 74, 154, 536
Bse21I CCTNAGG 1 cut(s) 392
Bse3DI GCAATG 3 cut(s) 846, 863, 953
Bse8I GATNNNNATC 2 cut(s) 569, 1138
BseBI CCWGG 1 cut(s) 501
BseDI CCNNGG 1 cut(s) 270
BseGI GGATG 6 cut(s) 199, 280, 665, 1028, 1300, 1304
BseJI GATNNNNATC 2 cut(s) 569, 1138
BseLI CCNNNNNNNGG 4 cut(s) 457, 725, 775, 1097
BseMI GCAATG 3 cut(s) 846, 863, 953
BseMII CTCAG 4 cut(s) 216, 406, 842, 1130
BseNI ACTGG 3 cut(s) 74, 154, 536
BseRI GAGGAG 1 cut(s) 909
BseXI GCAGC 3 cut(s) 278, 353, 1283
BsgI GTGCAG 1 cut(s) 945
Bsh1236I CGCG 1 cut(s) 956
BshFI GGCC 2 cut(s) 397, 664
BsiHKAI GWGCWC 1 cut(s) 695
BslFI GGGAC 1 cut(s) 267
BslI CCNNNNNNNGG 4 cut(s) 457, 725, 775, 1097
BsmAI GTCTC 3 cut(s) 483, 831, 1119
BsmFI GGGAC 1 cut(s) 267
BsnI GGCC 2 cut(s) 397, 664
Bso31I GGTCTC 1 cut(s) 483
Bsp119I TTCGAA 1 cut(s) 881
Bsp1286I GDGCHC 2 cut(s) 695, 944
Bsp143I GATC 7 cut(s) 603, 715, 729, 931, 1036, 1133, 1192
BspACI CCGC 2 cut(s) 944, 1032
BspANI GGCC 2 cut(s) 397, 664
BspCNI CTCAG 4 cut(s) 217, 405, 841, 1129
BspFNI CGCG 1 cut(s) 956
BspLI GGNNCC 2 cut(s) 75, 330
BspMAI CTGCAG 2 cut(s) 268, 371
BspMI ACCTGC 1 cut(s) 462
BspPI GGATC 4 cut(s) 598, 710, 737, 1141
BspQI GCTCTTC 2 cut(s) 356, 429
BspT104I TTCGAA 1 cut(s) 881
BspTNI GGTCTC 1 cut(s) 483
BsrDI GCAATG 3 cut(s) 846, 863, 953
BsrI ACTGG 3 cut(s) 74, 154, 536
BssECI CCNNGG 1 cut(s) 270
BssMI GATC 7 cut(s) 603, 715, 729, 931, 1036, 1133, 1192
Bst2UI CCWGG 1 cut(s) 501
Bst4CI ACNGT 4 cut(s) 29, 325, 978, 1096
Bst6I CTCTTC 6 cut(s) 221, 242, 356, 423, 429, 813
BstAPI GCANNNNNTGC 1 cut(s) 96
BstBI TTCGAA 1 cut(s) 881
BstC8I GCNNGC 5 cut(s) 88, 292, 371, 944, 1074
BstDEI CTNAG 8 cut(s) 35, 225, 333, 374, 392, 828, 1116, 1246
BstEII GGTNACC 1 cut(s) 650
BstENI CCTNNNNNAGG 1 cut(s) 455
BstF5I GGATG 6 cut(s) 199, 280, 665, 1028, 1300, 1304
BstFNI CGCG 1 cut(s) 956
BstHHI GCGC 1 cut(s) 86
BstKTI GATC 7 cut(s) 606, 718, 732, 934, 1039, 1136, 1195
BstMAI GTCTC 3 cut(s) 483, 831, 1119
BstMBI GATC 7 cut(s) 603, 715, 729, 931, 1036, 1133, 1192
BstMWI GCNNNNNNNGC 3 cut(s) 96, 275, 1082
BstNI CCWGG 1 cut(s) 501
BstNSI RCATGY 1 cut(s) 90
BstPI GGTNACC 1 cut(s) 650
BstSCI CCNGG 1 cut(s) 499
BstSFI CTRYAG 3 cut(s) 264, 367, 462
BstUI CGCG 1 cut(s) 956
BstV1I GCAGC 3 cut(s) 278, 353, 1283
BstV2I GAAGAC 1 cut(s) 972
BstX2I RGATCY 3 cut(s) 603, 715, 1133
BstYI RGATCY 3 cut(s) 603, 715, 1133
Bsu36I CCTNAGG 1 cut(s) 392
BsuI GTATCC 1 cut(s) 307
BsuRI GGCC 2 cut(s) 397, 664
BtsCI GGATG 6 cut(s) 199, 280, 665, 1028, 1300, 1304
BtsIMutI CAGTG 1 cut(s) 147
BveI ACCTGC 1 cut(s) 462
Cac8I GCNNGC 5 cut(s) 88, 292, 371, 944, 1074
CfoI GCGC 1 cut(s) 86
Cfr13I GGNCC 2 cut(s) 662, 1157
CseI GACGC 1 cut(s) 945
Csp6I GTAC 1 cut(s) 704
CviAII CATG 7 cut(s) 19, 53, 87, 305, 410, 688, 1016
CviQI GTAC 1 cut(s) 704
DdeI CTNAG 8 cut(s) 35, 225, 333, 374, 392, 828, 1116, 1246
DpnI GATC 7 cut(s) 605, 717, 731, 933, 1038, 1135, 1194
DpnII GATC 7 cut(s) 603, 715, 729, 931, 1036, 1133, 1192
DraI TTTAAA 1 cut(s) 142
Eam1104I CTCTTC 6 cut(s) 221, 242, 356, 423, 429, 813
EarI CTCTTC 6 cut(s) 221, 242, 356, 423, 429, 813
Eco147I AGGCCT 1 cut(s) 397
Eco24I GRGCYC 1 cut(s) 944
Eco31I GGTCTC 1 cut(s) 483
Eco47I GGWCC 1 cut(s) 1157
Eco57I CTGAAG 1 cut(s) 447
Eco81I CCTNAGG 1 cut(s) 392
Eco91I GGTNACC 1 cut(s) 650
EcoNI CCTNNNNNAGG 1 cut(s) 455
EcoO65I GGTNACC 1 cut(s) 650
EcoRI GAATTC 1 cut(s) 1107
EcoRII CCWGG 1 cut(s) 499
EcoT22I ATGCAT 1 cut(s) 92
EcoT38I GRGCYC 1 cut(s) 944
FaeI CATG 7 cut(s) 22, 56, 90, 308, 413, 691, 1019
FaqI GGGAC 1 cut(s) 267
FatI CATG 7 cut(s) 18, 52, 86, 304, 409, 687, 1015
FauI CCCGC 1 cut(s) 951
FbaI TGATCA 1 cut(s) 1192
Fnu4HI GCNGC 3 cut(s) 267, 367, 1272
FokI GGATG 5 cut(s) 186, 287, 652, 1015, 1307
FriOI GRGCYC 1 cut(s) 944
Fsp4HI GCNGC 3 cut(s) 267, 367, 1272
FspBI CTAG 2 cut(s) 158, 630
GlaI GCGC 1 cut(s) 85
GluI GCNGC 3 cut(s) 267, 367, 1272
HaeIII GGCC 2 cut(s) 397, 664
HgaI GACGC 1 cut(s) 945
HhaI GCGC 1 cut(s) 86
Hin1II CATG 7 cut(s) 22, 56, 90, 308, 413, 691, 1019
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HindIII AAGCTT 2 cut(s) 554, 1162
HinfI GANTC 7 cut(s) 229, 255, 309, 570, 710, 779, 844
HpaI GTTAAC 1 cut(s) 67
HphI GGTGA 3 cut(s) 156, 179, 1071
Hpy166II GTNNAC 3 cut(s) 67, 381, 1237
Hpy188I TCNGA 6 cut(s) 226, 314, 483, 613, 715, 1092
Hpy188III TCNNGA 4 cut(s) 259, 425, 848, 1253
Hpy8I GTNNAC 3 cut(s) 67, 381, 1237
HpyAV CCTTC 7 cut(s) 134, 427, 461, 644, 679, 823, 1019
HpyCH4III ACNGT 4 cut(s) 29, 325, 978, 1096
HpyCH4V TGCA 9 cut(s) 4, 56, 90, 147, 266, 369, 488, 743, 962
HpyF10VI GCNNNNNNNGC 3 cut(s) 96, 275, 1082
HpyF3I CTNAG 8 cut(s) 35, 225, 333, 374, 392, 828, 1116, 1246
Hsp92II CATG 7 cut(s) 22, 56, 90, 308, 413, 691, 1019
HspAI GCGC 1 cut(s) 84
Ksp22I TGATCA 1 cut(s) 1192
KspAI GTTAAC 1 cut(s) 67
Kzo9I GATC 7 cut(s) 603, 715, 729, 931, 1036, 1133, 1192
LguI GCTCTTC 2 cut(s) 356, 429
LmnI GCTCC 1 cut(s) 73
Lsp1109I GCAGC 3 cut(s) 278, 353, 1283
LweI GCATC 3 cut(s) 170, 265, 1085
MaeI CTAG 2 cut(s) 158, 630
MaeIII GTNAC 6 cut(s) 580, 650, 780, 889, 950, 970
MalI GATC 7 cut(s) 605, 717, 731, 933, 1038, 1135, 1194
MboI GATC 7 cut(s) 603, 715, 729, 931, 1036, 1133, 1192
MflI RGATCY 3 cut(s) 603, 715, 1133
MhlI GDGCHC 2 cut(s) 695, 944
MluCI AATT 8 cut(s) 5, 57, 193, 316, 385, 994, 1107, 1180
MluI ACGCGT 1 cut(s) 954
MlyI GAGTC 3 cut(s) 249, 318, 788
MmeI TCCRAC 3 cut(s) 292, 1111, 1115
Mph1103I ATGCAT 1 cut(s) 92
MroXI GAANNNNTTC 2 cut(s) 48, 1059
MseI TTAA 6 cut(s) 23, 66, 141, 192, 993, 1149
MslI CAYNNNNRTG 1 cut(s) 752
MspR9I CCNGG 1 cut(s) 501
MvaI CCWGG 1 cut(s) 501
MvnI CGCG 1 cut(s) 956
MwoI GCNNNNNNNGC 3 cut(s) 96, 275, 1082
NdeII GATC 7 cut(s) 603, 715, 729, 931, 1036, 1133, 1192
NlaIII CATG 7 cut(s) 22, 56, 90, 308, 413, 691, 1019
NlaIV GGNNCC 2 cut(s) 75, 330
NmeAIII GCCGAG 1 cut(s) 295
NmuCI GTSAC 3 cut(s) 780, 950, 970
NsiI ATGCAT 1 cut(s) 92
NspI RCATGY 1 cut(s) 90
NspV TTCGAA 1 cut(s) 881
PaeI GCATGC 1 cut(s) 90
PaqCI CACCTGC 1 cut(s) 462
PceI AGGCCT 1 cut(s) 397
PciSI GCTCTTC 2 cut(s) 356, 429
PdmI GAANNNNTTC 2 cut(s) 48, 1059
PfeI GAWTC 4 cut(s) 229, 570, 710, 844
PkrI GCNGC 3 cut(s) 268, 368, 1273
PleI GAGTC 3 cut(s) 249, 317, 787
PpsI GAGTC 3 cut(s) 249, 317, 787
PshBI ATTAAT 1 cut(s) 1149
Psp6I CCWGG 1 cut(s) 499
PspEI GGTNACC 1 cut(s) 650
PspGI CCWGG 1 cut(s) 499
PspN4I GGNNCC 2 cut(s) 75, 330
PspPI GGNCC 2 cut(s) 662, 1157
PstI CTGCAG 2 cut(s) 268, 371
PsuI RGATCY 3 cut(s) 603, 715, 1133
RsaI GTAC 1 cut(s) 705
RsaNI GTAC 1 cut(s) 704
RseI CAYNNNNRTG 1 cut(s) 752
SapI GCTCTTC 2 cut(s) 356, 429
SaqAI TTAA 6 cut(s) 23, 66, 141, 192, 993, 1149
SatI GCNGC 3 cut(s) 267, 367, 1272
Sau3AI GATC 7 cut(s) 603, 715, 729, 931, 1036, 1133, 1192
Sau96I GGNCC 2 cut(s) 662, 1157
SchI GAGTC 3 cut(s) 249, 318, 788
ScrFI CCNGG 1 cut(s) 501
SduI GDGCHC 2 cut(s) 695, 944
SfaNI GCATC 3 cut(s) 170, 265, 1085
SfcI CTRYAG 3 cut(s) 264, 367, 462
SfuI TTCGAA 1 cut(s) 881
SinI GGWCC 1 cut(s) 1157
SmiMI CAYNNNNRTG 1 cut(s) 752
SmlI CTYRAG 2 cut(s) 404, 1222
SmoI CTYRAG 2 cut(s) 404, 1222
SphI GCATGC 1 cut(s) 90
Sse9I AATT 8 cut(s) 5, 57, 193, 316, 385, 994, 1107, 1180
SseBI AGGCCT 1 cut(s) 397
SsiI CCGC 2 cut(s) 944, 1032
SspI AATATT 1 cut(s) 184
SspMI CTAG 2 cut(s) 158, 630
StuI AGGCCT 1 cut(s) 397
StyD4I CCNGG 1 cut(s) 499
TaaI ACNGT 4 cut(s) 29, 325, 978, 1096
TaqI TCGA 2 cut(s) 573, 881
TasI AATT 8 cut(s) 5, 57, 193, 316, 385, 994, 1107, 1180
TfiI GAWTC 4 cut(s) 229, 570, 710, 844
Tru1I TTAA 6 cut(s) 23, 66, 141, 192, 993, 1149
Tru9I TTAA 6 cut(s) 23, 66, 141, 192, 993, 1149
TscAI CASTG 1 cut(s) 154
TseFI GTSAC 3 cut(s) 780, 950, 970
TseI GCWGC 3 cut(s) 266, 366, 1271
Tsp45I GTSAC 3 cut(s) 780, 950, 970
TspRI CASTG 1 cut(s) 154
VpaK11BI GGWCC 1 cut(s) 1157
VspI ATTAAT 1 cut(s) 1149
XagI CCTNNNNNAGG 1 cut(s) 455
XapI RAATTY 2 cut(s) 1107, 1180
XceI RCATGY 1 cut(s) 90
XmnI GAANNNNTTC 2 cut(s) 48, 1059
XspI CTAG 2 cut(s) 158, 630
Zsp2I ATGCAT 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.