Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003184

Physical Location & Seq

Genomic Coordinates Reverse (-)

15511832 .. 15517545

Gene Structure 5714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G43600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3966 bp

ATGAGCTTGGTTTTCGCCATTAATGGACAAAGGTTCGAGCTTGAGCTCTCCTCTGTTGACCCTTCAACAACTTTGTTGGAGTTTCTTCGTTATCAGACTTCTTTCAAGAGTGTCAAGCTCAGCTGCGGTGAAGGAGGATGTGGTGCTTGTGTTGTTCTTCTCTCCAAGTTCGATCCTGTCTTACAAAAAGTCGAAGATTTCACTGTGAGCTCTTGTCTTACACTCCTCTGCAGCGTCAACCACTGCAATATTACGACATCAGAAGGACTTGGGAACAGCAGAGACGGTTTCCACCCGATTCACAAGCGGTTATCCGGTTTCCATGCCTCTCAATGTGGTTTCTGTACACCTGGAATGTCTGTTTCTCTCTTCTCTGCTCTTTTAGATGCTGACAAGTCTCAATATTCCGACCTTACGGTTGTGGAAGCAGAGAAGGCTGTCTCAGGAAACTTATGTCGGTGTACTGGTTACCGTCCGATTGTTGATGCTTGTAAGAGCTTTGCTTCGGATGTTGACATTGAGGATCTTGGATTAAACTCTTTTTGTAGGAAAGGGGATAAAGATTCTAGTAGTTTAACTCGGTTTGATAGTGAGAAGCGTATTTGTACATTTCCAGAGTTTCTCAAGGATGAGATTAAGTCTGTGGATTCTGGAATGTACCGATGGTGCAGCCCAGCGAGTGTTGAGGAACTCTCGAGCTTATTGGAAGCTTGCAAGGCTAATAGTAATACAGTTTCTATGAAATTGGTTGCTGGTAACACAAGTATGGGATACTATAAAGATGAAAGAGAGCAGAATTACGACAAATACATAGATATAACTCGAATCCCGCACCTTAAAGAGATCAGAGAAAACCAGAATGGGGTTGAGATAGGATCAGTGGTAACAATCTCTAAAGTTATTGCTGCTCTGAAGGAGATTAGGGTCTCACCGGGAGTGGAGAAGATATTTGGAAAACTTGCTACTCATATGGAAATGATAGCGGCGAGATTTATCAGGAACTTTGGTAGCATTGGTGGAAACCTTGTGATGGCTCAGAGGAAACAGTTTCCTTCTGATATGGCTACAATACTTCTTGCAGCTGGTGCATTTGTTAACATAATGAGCTCATCAAGAGGACTCGAAAAGCTAACACTTGAAGAGTTCCTTGAACGTTCTCCTCTTGAGGCTCATGATCTGGTTCTGAGTATTGAAATTCCTTTTTGGCATTCTGAAACAAACTCTGAATTGTTCTTTGAAACCTATAGAGCTGCACCTCGTCCACATGGAAGCGCTCTGGCTTACCTGAATGCTGCTTTCTTGGCTGAAGTGAAGGATACAATGGTAGTTAACTGTAGATTGGCTTTCGGGGCTTACGGGACCAAACACGCCATTAGGTGTAAGGAAATCGAAGAGTTCCTGTCTGGTAAAGTAATCACTGACAAAGTTCTGTATGAGGCTATTACCTTACTTGGCAATGTTGTGGTGCCTGAAGACGGTACAAGCAATCCTGCTTACAGGTCAAGCTTGGCGCCTGGCTTCCTTTTCAAGTTCCTTCACACCTTAATGACCCATCCTACTACAGATAAACCTTCAAATGGTTACCACTTGGATCCACCAAAACCGTTGCCAATGTTGTCTTCTTCACAAAATGTTCCTATAAACAATGAATATAATCCAGTTGGTCAGCCTGTTACTAAAGTTGGAGCTTCCCTTCAGGCTTCTGGTGAGGCTGTTTATGTGGACGATATTCCATCTCCCACAAACTGTCTCTATGGAGCATTTATCTATAGCAAAAAGCCATTCGCTAGGATAAAAGGTATTCACTTCAAGGACGATTTGGTACCTACTGGAGTTGTTGCAGTCATTTCTCGCAAGGATGTTCCTAAAGGCGGAAAGAATATTGGTATGAAGATTGGATTAGGCTCCGACCAATTGTTCGCAGAGGATTTCACCACTAGTGTAGGCGAATGCATCGCCTTCGTGGTTGCTGATACGCAGAGACATGCGGATGCTGCAGTAAACCTTGCAGTTGTTGAATACGAGACAGAGGATTTGGAACCACCAATCTTATCTGTAGAAGACGCGGTCAAGAAATCTAGTCTGTTTGACATTATCCCTTTCCTTTATCCACAACAAGTTGGTGATACATCAAAAGGAATGGCTGAAGCTGATCACCAAATTCTCAGCTCGGAAATAAGACTCGGATCGCAATACGTCTTCTACATGGAGACACAAACAGCTCTTGCAGTGGGAGATGAAGACAACTGCATTGTAGTCTATAGTTCAACACAGACCCCTCAGTACGTACAGTCATCGGTCGCTGCTTGCCTAGGCATCCCTGAAAATAACATCCGTGTCATAACCAGACGTGTTGGTGGAGGTTTTGGAGGGAAATCTGTCAAGTCAATGCCAGTTGCAACAGCGTGCGCTCTTGCTGCTAAGAAACTGCAGCGTCCTGTGAGAACTTATGTCAACCGCAAGACCGATATGATAATGACTGGTGGGAGGCATCCGATGAAGATAACGTATAGTGTGGGGTTCAAATCTACAGGGAAGATCACAGCTTTGGAGCTAGAAATACTAATTGATGCTGGGGCAAGTTATGGTTTTAGTATGTTTATTCCATCAAATCTCATAGGGTCGCTAAAGAAGTACAATTGGGGCGCCTTATCTTTTGATATCAAACTTTGTAAAACAAATCTTCTAAGCAGAGCAATCATGAGATCCCCGGGGGACGTGCAGGGTACGTATATTGCTGAAGCCATCATCGAAAATATAGCCTCTAGCCTCTCTTTGGAGGTTGATACAATAAGAAAGATTAATCTCCATACACATGAGAGCTTAGCCCTGTTCTACAAGGATGGTGCTGGTGAACCACATGAGTATACTTTATCTTCGATGTGGGATAAGGTTGGCGTATCTTCCAAGTTTGAGGAGAGGGTTTCTGTTGTCAGAGAGTTCAACGAGTCTAACATGTGGAGAAAACGAGGGATATCTCGAGTACCTATTATCTATGAGGTTTTATTGTTTGCTACTCCAGGGAGAGTAAGTGTTTTGAGCGATGGGACGATTGTTGTTGAGATTGGTGGAATCGAGCTAGGACAAGGGTTATGGACAAAGGTGAAGCAGATGACTAGTTATGCTCTTGGTATGCTACAATGCGATGGAACGGAAGAACTCTTGGAGAAGATAAGAGTTATACAATCAGATTCATTGAGCATGGTCCAAGGAAATTTCACAGGAGGTAGCACAACATCCGAGGGAAGCTGCGCAGCTGTTCGTCTCTGCTGCGAAACCTTAGTCGAAAGATTGAAACCTTTAATGGAAAGATCAGATGGTCCAATCACCTGGAATGAGTTGATTTCTCAGGCTTATGCACAATCCGTGAACTTATCAGCTAGTGACTTGTATACTCCAAAAGACACTCCCATGCAGTACCTGAACTATGGTACTGCGGTCAGCGAGGTTGAAGTAGACCTTGTGACGGGACAAACCACAGTTCTACAGACAGATATCTTATATGACTGTGGAAAAAGTCTCAATCCCGCTGTCGATTTAGGACAGATTGAAGGATCTTTTGTTCAAGGACTTGGGTTTTTCATGCTTGAAGAGTACATAGAAGATCCAGAAGGACTCCTTCTGACGGATAGCACATGGACATACAAGATTCCAACAGTTGACACCATTCCTAAACAGTTCAATGTCGAGATACTAAATGGTGGATGTCATGAAAAACGCGTACTCTCTTCTAAAGCCTCGGGAGAGCCTCCGTTGCTACTGGCAGCTTCGGTGCACTGCGCTACCAGACAGGCTGTTAAAGAAGCACGCAAACAGCTATGTATGTGGAAAGGTGAGAATGGTTCCTCCGGTTCAGCGTTTCAGTTGCCAGTTCCAGCTACAATGCCGGTTGTGAAGGAGCTATGCGGTCTAGATATCATTGAAAGCTATTTGGAGTGGAAGTTACACGACAACTCAAACCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004029 GO:0004031 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009687 GO:0009688 GO:0009850 GO:0009851 GO:0009987 GO:0010293 GO:0010817 GO:0016053 GO:0016106 GO:0016114 GO:0016143 GO:0016491 GO:0016620 GO:0016623 GO:0016903 GO:0018479 GO:0018488 GO:0019748 GO:0019752 GO:0019757 GO:0019760 GO:0019899 GO:0031625 GO:0032787 GO:0036094 GO:0042445 GO:0042446 GO:0043167 GO:0043168 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046394 GO:0048037 GO:0050302 GO:0050660 GO:0050662 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0097159 GO:1901135 GO:1901265 GO:1901363 GO:1901564 GO:1901576 GO:1901615 GO:1901617 GO:1901657 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00380 ko00906 ko01100 ko01110 map00380 map00906 map01100 map01110

Pfam Domains

Protein Families

Ald_Xan_dh_C Ald_Xan_dh_C2 CO_deh_flav_C FAD_binding_5 Fer2 Fer2_2

Protein Analysis

1321

Amino Acids

144.58

Weight (kDa)

5.49

Isoelectric Point (pI)

37.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer2	PF00111	7 - 74	2.3e-06	2Fe-2S iron-sulfur cluster binding domain
Fer2_2	PF01799	86 - 165	8.2e-22	[2Fe-2S] binding domain
FAD_binding_5	PF00941	219 - 402	8.1e-44	FAD binding domain in molybdopterin dehydrogenase
CO_deh_flav_C	PF03450	414 - 514	1.2e-20	CO dehydrogenase flavoprotein C-terminal domain
Ald_Xan_dh_C	PF01315	568 - 677	1.2e-34	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
MoCoBD_1	PF02738	705 - 936	3.7e-79	Molybdopterin cofactor-binding domain
MoCoBD_2	PF20256	968 - 1224	3e-73	Molybdopterin cofactor-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04580 AT2G27150 AT2G27150 AT2G27150 AT2G27150 AT2G27150 AT2G27150 AT3G43600
fragaria_vesca	FvH4_3g26980 FvH4_3g26980 FvH4_3g26980 FvH4_3g26980 FvH4_3g26980 FvH4_3g26980
malus_domestica	MD00G1162900.v1.1 MD03G1162200.v1.1 MD11G1178400.v1.1 MD11G1178500.v1.1
prunus_persica	Prupe.6G150900_v2.0.a1 Prupe.6G150900_v2.0.a1 Prupe.6G150900_v2.0.a1 Prupe.6G150900_v2.0.a1 Prupe.6G150900_v2.0.a1
pyrus_communis	pycom03g11520 pycom11g15240 pycom11g15280 pycom11g15360
rosa_chinensis	RchiOBHm_Chr5g0049511
rosa_laevigata	RLG00000034622
rosa_multiflora	Rmu_sc0001307.1_g000031
rosa_roxburghii	Rroxscaffold_1G00032200
rosa_rugosa	Rorug05G0248700
rosa_samantha	Rh5AG325300 Rh5BG336500 Rh5CG361200 Rh5DG348600
rosa_wichuraiana	Rw5G030710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	3253
Acc65I	GGTACC	1 cut(s)	1822
AccB1I	GGYRCC	4 cut(s)	1465, 1510, 1822, 2645
AccI	GTMKAC	3 cut(s)	2867, 3392, 3456
AccII	CGCG	2 cut(s)	2066, 3720
AclI	AACGTT	1 cut(s)	1153
AclWI	GGATC	9 cut(s)	167, 531, 883, 1586, 1599, 2194, 2700, 3562, 3599
AcsI	RAATTY	3 cut(s)	1194, 2160, 3214
AcuI	CTGAAG	6 cut(s)	932, 1326, 1491, 1679, 2166, 2760
AcyI	GRCGYC	2 cut(s)	1511, 2646
AfeI	AGCGCT	1 cut(s)	1273
AfiI	CCNNNNNNNGG	8 cut(s)	862, 1030, 1475, 1577, 1871, 2776, 3466, 3625
AflIII	ACRYGT	3 cut(s)	2350, 2955, 3718
AhlI	ACTAGT	2 cut(s)	1937, 3116
AjiI	CACGTC	2 cut(s)	2351, 2719
AjnI	CCWGG	4 cut(s)	349, 1513, 3019, 3329
AjuI	GAANNNNNNNTTGG	2 cut(s)	1603, 1635
AloI	GAACNNNNNNTCC	2 cut(s)	3546, 3578
Alw21I	GWGCWC	4 cut(s)	48, 212, 1109, 3777
Alw44I	GTGCAC	1 cut(s)	3773
AlwI	GGATC	9 cut(s)	167, 531, 883, 1586, 1599, 2194, 2700, 3562, 3599
AlwNI	CAGNNNCTG	1 cut(s)	3421
Ama87I	CYCGRG	4 cut(s)	694, 2710, 2979, 3739
Aor51HI	AGCGCT	1 cut(s)	1273
ApaLI	GTGCAC	1 cut(s)	3773
ApoI	RAATTY	3 cut(s)	1194, 2160, 3214
ArsI	GACNNNNNNTTYG	6 cut(s)	1901, 1933, 2017, 2049, 3267, 3299
AseI	ATTAAT	2 cut(s)	21, 2802
Asp718I	GGTACC	1 cut(s)	1822
AspA2I	CCTAGG	1 cut(s)	2311
AspLEI	GCGC	6 cut(s)	1274, 1513, 2411, 2648, 3254, 3782
AspS9I	GGNCC	3 cut(s)	1359, 3205, 3320
AsuC2I	CCSGG	3 cut(s)	933, 2711, 2712
AvaI	CYCGRG	4 cut(s)	694, 2710, 2979, 3739
AvaII	GGWCC	3 cut(s)	1359, 3205, 3320
AvrII	CCTAGG	1 cut(s)	2311
BaeGI	GKGCMC	1 cut(s)	3777
BaeI	ACNNNNGTAYC	4 cut(s)	1308, 1341, 3423, 3456
BamHI	GGATCC	1 cut(s)	1591
BanI	GGYRCC	4 cut(s)	1465, 1510, 1822, 2645
BanII	GRGCYC	3 cut(s)	48, 212, 1109
BbsI	GAAGAC	5 cut(s)	1479, 1611, 2067, 2191, 2247
Bbv12I	GWGCWC	4 cut(s)	48, 212, 1109, 3777
BcgI	CGANNNNNNTGC	2 cut(s)	1942, 1976
BciT130I	CCWGG	4 cut(s)	351, 1515, 3021, 3331
BciVI	GTATCC	2 cut(s)	764, 1309
BclI	TGATCA	1 cut(s)	2152
BcnI	CCSGG	3 cut(s)	933, 2711, 2712
BcuI	ACTAGT	2 cut(s)	1937, 3116
BfoI	RGCGCY	3 cut(s)	1275, 1514, 2649
BfuI	GTATCC	2 cut(s)	764, 1309
BlnI	CCTAGG	1 cut(s)	2311
BlpI	GCTNAGC	2 cut(s)	119, 2824
Bme1390I	CCNGG	7 cut(s)	351, 933, 1515, 2711, 2712, 3021, 3331
Bme18I	GGWCC	3 cut(s)	1359, 3205, 3320
BmeT110I	CYCGRG	4 cut(s)	694, 2710, 2979, 3739
BmgBI	CACGTC	2 cut(s)	2351, 2719
BmgT120I	GGNCC	3 cut(s)	1359, 3205, 3320
BmiI	GGNNCC	9 cut(s)	1360, 1467, 1512, 1593, 1824, 1906, 2040, 2647, 3844
BmrFI	CCNGG	7 cut(s)	351, 933, 1515, 2711, 2712, 3021, 3331
BmsI	GCATC	7 cut(s)	376, 475, 1962, 1981, 2325, 2500, 2560
BpiI	GAAGAC	5 cut(s)	1479, 1611, 2067, 2191, 2247
BplI	GAGNNNNNCTC	4 cut(s)	35, 67, 677, 709
BpmI	CTGGAG	2 cut(s)	1851, 3003
Bpu1102I	GCTNAGC	2 cut(s)	119, 2824
BpuEI	CTTGAG	3 cut(s)	62, 608, 1184
BpuMI	CCSGG	3 cut(s)	933, 2711, 2712
BsaAI	YACGTR	2 cut(s)	2287, 2730
BsaHI	GRCGYC	2 cut(s)	1511, 2646
BsaI	GGTCTC	1 cut(s)	931
BsaJI	CCNNGG	8 cut(s)	2311, 2709, 2710, 2711, 3020, 3208, 3240, 3738
BsaWI	WCCGGW	2 cut(s)	314, 3848
BsaXI	ACNNNNNCTCC	4 cut(s)	3016, 3046, 3926, 3956
Bsc4I	CCNNNNNNNGG	8 cut(s)	862, 1030, 1475, 1577, 1871, 2776, 3466, 3625
Bse118I	RCCGGY	1 cut(s)	3886
Bse1I	ACTGG	7 cut(s)	469, 1658, 1834, 2393, 2485, 3765, 3869
Bse3DI	GCAATG	1 cut(s)	1462
BseBI	CCWGG	4 cut(s)	351, 1515, 3021, 3331
BseDI	CCNNGG	8 cut(s)	2311, 2709, 2710, 2711, 3020, 3208, 3240, 3738
BseLI	CCNNNNNNNGG	8 cut(s)	862, 1030, 1475, 1577, 1871, 2776, 3466, 3625
BseMI	GCAATG	1 cut(s)	1462
BseMII	CTCAG	7 cut(s)	133, 456, 1049, 1175, 2179, 2294, 3362
BseNI	ACTGG	7 cut(s)	469, 1658, 1834, 2393, 2485, 3765, 3869
BseRI	GAGGAG	4 cut(s)	40, 215, 1149, 2930
BseSI	GKGCMC	1 cut(s)	3777
BseYI	CCCAGC	2 cut(s)	673, 2573
BsgI	GTGCAG	3 cut(s)	688, 1236, 2741
Bsh1236I	CGCG	2 cut(s)	2066, 3720
Bsh1285I	CGRYCG	1 cut(s)	2301
BshNI	GGYRCC	4 cut(s)	1465, 1510, 1822, 2645
BsiEI	CGRYCG	1 cut(s)	2301
BsiHKAI	GWGCWC	4 cut(s)	48, 212, 1109, 3777
BsiHKCI	CYCGRG	4 cut(s)	694, 2710, 2979, 3739
BsiSI	CCGG	5 cut(s)	315, 932, 2711, 3849, 3887
BslFI	GGGAC	4 cut(s)	1372, 2729, 3061, 3483
BslI	CCNNNNNNNGG	8 cut(s)	862, 1030, 1475, 1577, 1871, 2776, 3466, 3625
BsmBI	CGTCTC	2 cut(s)	276, 3269
BsmFI	GGGAC	4 cut(s)	1372, 2729, 3061, 3483
BsmI	GAATGC	3 cut(s)	1207, 1294, 1955
Bso31I	GGTCTC	1 cut(s)	931
BsoBI	CYCGRG	4 cut(s)	694, 2710, 2979, 3739
Bsp1286I	GDGCHC	4 cut(s)	48, 212, 1109, 3777
Bsp1407I	TGTACA	2 cut(s)	344, 605
Bsp1720I	GCTNAGC	2 cut(s)	119, 2824
BspCNI	CTCAG	7 cut(s)	132, 455, 1048, 1176, 2178, 2293, 3361
BspFNI	CGCG	2 cut(s)	2066, 3720
BspHI	TCATGA	3 cut(s)	1171, 2700, 3709
BspLI	GGNNCC	9 cut(s)	1360, 1467, 1512, 1593, 1824, 1906, 2040, 2647, 3844
BspMAI	CTGCAG	3 cut(s)	233, 1999, 2433
BspPI	GGATC	9 cut(s)	167, 531, 883, 1586, 1599, 2194, 2700, 3562, 3599
BspT107I	GGYRCC	4 cut(s)	1465, 1510, 1822, 2645
BspTNI	GGTCTC	1 cut(s)	931
BsrDI	GCAATG	1 cut(s)	1462
BsrFI	RCCGGY	1 cut(s)	3886
BsrGI	TGTACA	2 cut(s)	344, 605
BsrI	ACTGG	7 cut(s)	469, 1658, 1834, 2393, 2485, 3765, 3869
BssAI	RCCGGY	1 cut(s)	3886
BssECI	CCNNGG	8 cut(s)	2311, 2709, 2710, 2711, 3020, 3208, 3240, 3738
BssNAI	GTATAC	2 cut(s)	2868, 3393
BssNI	GRCGYC	2 cut(s)	1511, 2646
BssT1I	CCWWGG	2 cut(s)	2311, 3208
Bst1107I	GTATAC	2 cut(s)	2868, 3393
Bst2UI	CCWGG	4 cut(s)	351, 1515, 3021, 3331
Bst6I	CTCTTC	5 cut(s)	374, 1134, 1386, 3585, 3733
BstACI	GRCGYC	2 cut(s)	1511, 2646
BstAPI	GCANNNNNTGC	1 cut(s)	1085
BstAUI	TGTACA	2 cut(s)	344, 605
BstBAI	YACGTR	2 cut(s)	2287, 2730
BstC8I	GCNNGC	4 cut(s)	712, 2308, 2407, 3808
BstEII	GGTNACC	2 cut(s)	467, 1580
BstFNI	CGCG	2 cut(s)	2066, 3720
BstH2I	RGCGCY	3 cut(s)	1275, 1514, 2649
BstHHI	GCGC	6 cut(s)	1274, 1513, 2411, 2648, 3254, 3782
BstMCI	CGRYCG	1 cut(s)	2301
BstMWI	GCNNNNNNNGC	8 cut(s)	434, 716, 1085, 1301, 1349, 1994, 2417, 3754
BstNI	CCWGG	4 cut(s)	351, 1515, 3021, 3331
BstNSI	RCATGY	2 cut(s)	1988, 2959
BstPI	GGTNACC	2 cut(s)	467, 1580
BstSCI	CCNGG	7 cut(s)	349, 931, 1513, 2709, 2710, 3019, 3329
BstSLI	GKGCMC	1 cut(s)	3777
BstSNI	TACGTA	2 cut(s)	2287, 2730
BstUI	CGCG	2 cut(s)	2066, 3720
BstV2I	GAAGAC	5 cut(s)	1479, 1611, 2067, 2191, 2247
BstX2I	RGATCY	5 cut(s)	523, 1591, 2705, 3554, 3604
BstXI	CCANNNNNNTGG	1 cut(s)	3330
BstYI	RGATCY	5 cut(s)	523, 1591, 2705, 3554, 3604
BstZ17I	GTATAC	2 cut(s)	2868, 3393
BsuI	GTATCC	2 cut(s)	764, 1309
BtgZI	GCGATG	3 cut(s)	1939, 3057, 3159
BtrI	CACGTC	2 cut(s)	2351, 2719
BtsI	GCAGTG	3 cut(s)	241, 2235, 3775
BtsIMutI	CAGTG	6 cut(s)	201, 241, 885, 1416, 2235, 3775
Cac8I	GCNNGC	4 cut(s)	712, 2308, 2407, 3808
CaiI	CAGNNNCTG	1 cut(s)	3421
CciI	TCATGA	3 cut(s)	1171, 2700, 3709
CfoI	GCGC	6 cut(s)	1274, 1513, 2411, 2648, 3254, 3782
Cfr10I	RCCGGY	1 cut(s)	3886
Cfr13I	GGNCC	3 cut(s)	1359, 3205, 3320
Cfr9I	CCCGGG	1 cut(s)	2710
CseI	GACGC	3 cut(s)	223, 2072, 2423
DinI	GGCGCC	2 cut(s)	1512, 2647
Eam1104I	CTCTTC	5 cut(s)	374, 1134, 1386, 3585, 3733
EarI	CTCTTC	5 cut(s)	374, 1134, 1386, 3585, 3733
EciI	GGCGGA	1 cut(s)	1887
Ecl136II	GAGCTC	3 cut(s)	46, 210, 1107
Eco105I	TACGTA	2 cut(s)	2287, 2730
Eco130I	CCWWGG	2 cut(s)	2311, 3208
Eco24I	GRGCYC	3 cut(s)	48, 212, 1109
Eco31I	GGTCTC	1 cut(s)	931
Eco32I	GATATC	4 cut(s)	2662, 2976, 3496, 3916
Eco47I	GGWCC	3 cut(s)	1359, 3205, 3320
Eco47III	AGCGCT	1 cut(s)	1273
Eco53kI	GAGCTC	3 cut(s)	46, 210, 1107
Eco57I	CTGAAG	6 cut(s)	932, 1326, 1491, 1679, 2166, 2760
Eco88I	CYCGRG	4 cut(s)	694, 2710, 2979, 3739
Eco91I	GGTNACC	2 cut(s)	467, 1580
EcoICRI	GAGCTC	3 cut(s)	46, 210, 1107
EcoO65I	GGTNACC	2 cut(s)	467, 1580
EcoRII	CCWGG	4 cut(s)	349, 1513, 3019, 3329
EcoRV	GATATC	4 cut(s)	2662, 2976, 3496, 3916
EcoT14I	CCWWGG	2 cut(s)	2311, 3208
EcoT22I	ATGCAT	1 cut(s)	1955
EcoT38I	GRGCYC	3 cut(s)	48, 212, 1109
EgeI	GGCGCC	2 cut(s)	1512, 2647
EheI	GGCGCC	2 cut(s)	1512, 2647
ErhI	CCWWGG	2 cut(s)	2311, 3208
Esp3I	CGTCTC	2 cut(s)	276, 3269
FalI	AAGNNNNNCTT	6 cut(s)	1131, 1163, 3444, 3476, 3603, 3635
FaqI	GGGAC	4 cut(s)	1372, 2729, 3061, 3483
FauI	CCCGC	2 cut(s)	837, 3535
FauNDI	CATATG	1 cut(s)	969
FbaI	TGATCA	1 cut(s)	2152
FblI	GTMKAC	3 cut(s)	2867, 3392, 3456
FriOI	GRGCYC	3 cut(s)	48, 212, 1109
FspI	TGCGCA	1 cut(s)	3253
GlaI	GCGC	6 cut(s)	1273, 1512, 2410, 2647, 3253, 3781
GsaI	CCCAGC	2 cut(s)	677, 2577
GsuI	CTGGAG	2 cut(s)	1851, 3003
HaeII	RGCGCY	3 cut(s)	1275, 1514, 2649
HapII	CCGG	5 cut(s)	315, 932, 2711, 3849, 3887
HgaI	GACGC	3 cut(s)	223, 2072, 2423
HhaI	GCGC	6 cut(s)	1274, 1513, 2411, 2648, 3254, 3782
Hin1I	GRCGYC	2 cut(s)	1511, 2646
Hin6I	GCGC	6 cut(s)	1272, 1511, 2409, 2646, 3252, 3780
HinP1I	GCGC	6 cut(s)	1272, 1511, 2409, 2646, 3252, 3780
HincII	GTYRAC	7 cut(s)	58, 238, 514, 1096, 1330, 2455, 3661
HindII	GTYRAC	7 cut(s)	58, 238, 514, 1096, 1330, 2455, 3661
HindIII	AAGCTT	2 cut(s)	708, 1504
HpaI	GTTAAC	2 cut(s)	1096, 1330
HpaII	CCGG	5 cut(s)	315, 932, 2711, 3849, 3887
HpyCH4IV	ACGT	7 cut(s)	1153, 2196, 2286, 2350, 2507, 2718, 2729
HpyF10VI	GCNNNNNNNGC	8 cut(s)	434, 716, 1085, 1301, 1349, 1994, 2417, 3754
HpySE526I	ACGT	7 cut(s)	1153, 2196, 2286, 2350, 2507, 2718, 2729
Hsp92I	GRCGYC	2 cut(s)	1511, 2646
HspAI	GCGC	6 cut(s)	1272, 1511, 2409, 2646, 3252, 3780
KasI	GGCGCC	2 cut(s)	1510, 2645
KpnI	GGTACC	1 cut(s)	1826
Ksp22I	TGATCA	1 cut(s)	2152
KspAI	GTTAAC	2 cut(s)	1096, 1330
LmnI	GCTCC	5 cut(s)	1685, 1757, 1910, 2551, 3898
LweI	GCATC	7 cut(s)	376, 475, 1962, 1981, 2325, 2500, 2560
MaeII	ACGT	7 cut(s)	1153, 2196, 2286, 2350, 2507, 2718, 2729
MaeIII	GTNAC	8 cut(s)	467, 755, 883, 1580, 1672, 3383, 3463, 3942
MfeI	CAATTG	2 cut(s)	1913, 2638
MflI	RGATCY	5 cut(s)	523, 1591, 2705, 3554, 3604
MhlI	GDGCHC	4 cut(s)	48, 212, 1109, 3777
MluCI	AATT	9 cut(s)	743, 796, 1194, 1226, 1913, 2160, 2565, 2638, 3214
MluI	ACGCGT	1 cut(s)	3718
Mly113I	GGCGCC	2 cut(s)	1511, 2646
MlyI	GAGTC	4 cut(s)	1113, 2175, 2957, 3609
MmeI	TCCRAC	5 cut(s)	57, 432, 1663, 1932, 3677
Mph1103I	ATGCAT	1 cut(s)	1955
MslI	CAYNNNNRTG	5 cut(s)	764, 1544, 1989, 2814, 3410
MspA1I	CMGCKG	4 cut(s)	123, 1082, 3257, 3530
MspI	CCGG	5 cut(s)	315, 932, 2711, 3849, 3887
MspR9I	CCNGG	7 cut(s)	351, 933, 1515, 2711, 2712, 3021, 3331
MunI	CAATTG	2 cut(s)	1913, 2638
Mva1269I	GAATGC	3 cut(s)	1207, 1294, 1955
MvaI	CCWGG	4 cut(s)	351, 1515, 3021, 3331
MvnI	CGCG	2 cut(s)	2066, 3720
MwoI	GCNNNNNNNGC	8 cut(s)	434, 716, 1085, 1301, 1349, 1994, 2417, 3754
NarI	GGCGCC	2 cut(s)	1511, 2646
NciI	CCSGG	3 cut(s)	933, 2711, 2712
NdeI	CATATG	1 cut(s)	969
NlaIV	GGNNCC	9 cut(s)	1360, 1467, 1512, 1593, 1824, 1906, 2040, 2647, 3844
NmuCI	GTSAC	2 cut(s)	3383, 3463
NsbI	TGCGCA	1 cut(s)	3253
NsiI	ATGCAT	1 cut(s)	1955
NspI	RCATGY	2 cut(s)	1988, 2959
PaeR7I	CTCGAG	2 cut(s)	694, 2979
PagI	TCATGA	3 cut(s)	1171, 2700, 3709
PciI	ACATGT	1 cut(s)	2955
PctI	GAATGC	3 cut(s)	1207, 1294, 1955
PfeI	GAWTC	7 cut(s)	298, 563, 647, 825, 3072, 3191, 3649
PflFI	GACNNNGTC	1 cut(s)	2066
PleI	GAGTC	4 cut(s)	1113, 2175, 2956, 3609
PluTI	GGCGCC	2 cut(s)	1514, 2649
PpsI	GAGTC	4 cut(s)	1113, 2175, 2956, 3609
Ppu21I	YACGTR	2 cut(s)	2287, 2730
PscI	ACATGT	1 cut(s)	2955
PshBI	ATTAAT	2 cut(s)	21, 2802
Psp124BI	GAGCTC	3 cut(s)	48, 212, 1109
Psp1406I	AACGTT	1 cut(s)	1153
Psp6I	CCWGG	4 cut(s)	349, 1513, 3019, 3329
PspEI	GGTNACC	2 cut(s)	467, 1580
PspFI	CCCAGC	2 cut(s)	673, 2573
PspGI	CCWGG	4 cut(s)	349, 1513, 3019, 3329
PspN4I	GGNNCC	9 cut(s)	1360, 1467, 1512, 1593, 1824, 1906, 2040, 2647, 3844
PspPI	GGNCC	3 cut(s)	1359, 3205, 3320
PstI	CTGCAG	3 cut(s)	233, 1999, 2433
PstNI	CAGNNNCTG	1 cut(s)	3421
PsuI	RGATCY	5 cut(s)	523, 1591, 2705, 3554, 3604
PsyI	GACNNNGTC	1 cut(s)	2066
PvuII	CAGCTG	3 cut(s)	123, 1082, 3257
RseI	CAYNNNNRTG	5 cut(s)	764, 1544, 1989, 2814, 3410
SacI	GAGCTC	3 cut(s)	48, 212, 1109
Sau96I	GGNCC	3 cut(s)	1359, 3205, 3320
SchI	GAGTC	4 cut(s)	1113, 2175, 2957, 3609
ScrFI	CCNGG	7 cut(s)	351, 933, 1515, 2711, 2712, 3021, 3331
SduI	GDGCHC	4 cut(s)	48, 212, 1109, 3777
SfaNI	GCATC	7 cut(s)	376, 475, 1962, 1981, 2325, 2500, 2560
SfoI	GGCGCC	2 cut(s)	1512, 2647
Sfr274I	CTCGAG	2 cut(s)	694, 2979
SinI	GGWCC	3 cut(s)	1359, 3205, 3320
SlaI	CTCGAG	2 cut(s)	694, 2979
SmaI	CCCGGG	1 cut(s)	2712
SmiMI	CAYNNNNRTG	5 cut(s)	764, 1544, 1989, 2814, 3410
SmlI	CTYRAG	5 cut(s)	41, 623, 694, 1163, 2979
SmoI	CTYRAG	5 cut(s)	41, 623, 694, 1163, 2979
SnaBI	TACGTA	2 cut(s)	2287, 2730
SpeI	ACTAGT	2 cut(s)	1937, 3116
Sse9I	AATT	9 cut(s)	743, 796, 1194, 1226, 1913, 2160, 2565, 2638, 3214
SspDI	GGCGCC	2 cut(s)	1510, 2645
SspI	AATATT	3 cut(s)	250, 404, 1882
SstI	GAGCTC	3 cut(s)	48, 212, 1109
StyD4I	CCNGG	7 cut(s)	349, 931, 1513, 2709, 2710, 3019, 3329
StyI	CCWWGG	2 cut(s)	2311, 3208
TaiI	ACGT	7 cut(s)	1156, 2199, 2289, 2353, 2510, 2721, 2732
TaqII	GACCGA	2 cut(s)	2287, 2480
TasI	AATT	9 cut(s)	743, 796, 1194, 1226, 1913, 2160, 2565, 2638, 3214
TatI	WGTACW	5 cut(s)	344, 461, 605, 2634, 3594
TauI	GCSGC	1 cut(s)	986
TfiI	GAWTC	7 cut(s)	298, 563, 647, 825, 3072, 3191, 3649
TscAI	CASTG	6 cut(s)	208, 248, 885, 1423, 2235, 3782
TseFI	GTSAC	2 cut(s)	3383, 3463
Tsp45I	GTSAC	2 cut(s)	3383, 3463
TspDTI	ATGAA	9 cut(s)	755, 798, 1662, 1904, 2253, 2513, 3183, 3571, 3726
TspGWI	ACGGA	5 cut(s)	2324, 3167, 3355, 3641, 3741
TspMI	CCCGGG	1 cut(s)	2710
TspRI	CASTG	6 cut(s)	208, 248, 885, 1423, 2235, 3782
Tth111I	GACNNNGTC	1 cut(s)	2066
VneI	GTGCAC	1 cut(s)	3773
VpaK11BI	GGWCC	3 cut(s)	1359, 3205, 3320
VspI	ATTAAT	2 cut(s)	21, 2802
XapI	RAATTY	3 cut(s)	1194, 2160, 3214
XbaI	TCTAGA	1 cut(s)	3910
XceI	RCATGY	2 cut(s)	1988, 2959
XhoI	CTCGAG	2 cut(s)	694, 2979
XmaI	CCCGGG	1 cut(s)	2710
XmaJI	CCTAGG	1 cut(s)	2311
XmiI	GTMKAC	3 cut(s)	2867, 3392, 3456
Zsp2I	ATGCAT	1 cut(s)	1955

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.