Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003184

Physical Location & Seq

Genomic Coordinates Reverse (-)

48901637 .. 48911139

Gene Structure 9503 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G030710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3066 bp

ATGGATAAAATTGCTTCAGGGTTTCTCAGAAATACAGCTAGTATAGGAGGGAATTTGGTGATGGCACAAAGAAAGAACTTTCCTTCAGATATTGCTACAATACTTCTCGCTGTGGATTCAACAGTGAATATCATGAGTGGTTCTAGATCTGAAATTATTATGTTGGAGGATTTTCTGAAAAGAGCCCCATTGGATCCCAAAAGTGTACTTTTAAGTGTTAAAATCCCAAACTGGGAAGCAGTTACAAAAGTTTCTGCAGGATCCAATACTATGTTGCTATTTGAAACCTATAGAGCTGCACCCAGACCGCTAGGAAATGCATTGCCTTATTTGAATGCTGCTTTCTTGGCTGAAGTTTCTTCATGTAAAACTTCTACTGGATTTGTGGTACATCACTGCTGTCTGGCTTTTGGTGCTTATGGGACTAAACATGCAATTAGAGCAAGAAAGGTTGAGGACTTTTTAAACGGAAAAACCTTGAGTGCTGGTGTTTTGTATGAAGCGATTAAGTTAGTTCGAGCTACTGTGGTTCCTGAAGAAGGCACTACGAGTCCTGCTTACAGGTCAAGCTTGGCTTGTGGTTTTCTTTTTGAGTTCTTTAGCCCCTTTATTAACAGTGACACCGAAATTTCTGATAGTTTCTTGGAGAATATATTGTTCCCTACTTCTAAGATGAATAAGAACCAATGTTGCAATGATGAGATTCCATATGTTCTATCATCAGCTAAACAAGTGCTTAATTTAAGTGCAGACTATGATCCAGTCGGCAAGCCAATTATAAAATCTGGAGCTGCTATCCAAGCTTCAGGTGAGGCTGTGTATGTAGATGACATTCCGTCACCGACAAATTGCTTGCATGGAGCGTTCATTTATAGCACAAAGCCTTTCGTACGGGTTAAGGGAATAAAATTCAAAACTAAACCACAGCCAGATGGAGTTTCTGCTGTCTTATCTTTTAAAGATATCCCCAATGGTGGGGAGAATGTGGGATCTAAGACTATTTTTGGTACCGAACCTCTTTTTGCTGATGATCTTACTCAATGCGCTGGTCAGCGTCTTGCCTTTTTGGTTGCAGATACACAGAAAAATGCAGATTTGGCTGCAAATTTTGTGGATGTTGATTATGAAATGGAAAGTATAGAGCAACCTATACTATCCGTAGAGGAGGCTATTAAGAGGTCTAGTTTTTTTGAGGTCCCTCCTTTCTTATACCCGAAGCAAGTTGGTGACATATCAAAAGGAATGGCTTTAGCTGATCACAAGATTACATCTGCTGAGATCAAACTTGGTTCACAATACTATTTCTACATGGAGACACAAACTGCCCTTGCTGTACCAGATGAAGACAACTGCATAGTGGTTTATACTTCAAGTCAGTGTCCTCAGTTTCAACACTCAGTCATCGCAAAGTGTCTTGGCATTCCTGAAAGTAATGTCCGTGTAATTACAAGGAGGGTTGGTGGGGGTTTTGGTGGAAAGGCCGTAAAATCCATTCCTGTCGCAACTGCATGTGCACTAGCAGCACACAAATTACACCGCCCTGTCAGGATATATGTCAATCGCAAGACTGATATGATAATGGCAGGAGGAAGGCATCCCATGAAGATAATTTACAGTGTCGGATTCAAGTCTGATGGGAAGATTACTGCTTTACAACTTGATATATTAATCGATGCAGGGATGGCCCCAGATATAAGTCCAATTATGCCACACAATGTTCTGGGTGCACTTAAGAAGTATGATTGGGGTGCTCTGTCTTTTGATGTAAAGGTATGCAAAACTAACAATCCAAGTAGGTCTGCTATGCGGGGTCCTGGGGAGGTGCAGGGTTCATTTATTGCTGAAGTTGTAATTGAACATGTAGCATCTACCCTTTCCATGGAAGTGGATTGTGTGAGAAATATAAATCTTCACACACATTGCAGCCTTGATTTATTTTATGAGAATAGTGCTGGTGAACCTCTTGAGTATACTTTACCTTTAATTTGGGACAAGCTGGCCATGTCTTCAAGCTTTAACCAAAGGACTGAAATGGTAAAAGAATTTAATAAATGCAATAAATGGCGGAAAAGAGGAATTTCTCGAGTACCTATAGTACATGAAGTTTCATTGAGACCAACTCCAGGGAAAGTGGGCATTCTAAGCGATGGTTCTGTTGTTGTTGAAGTTGGAGGGATTGAACTGGGTCAGGGTCTCTGGACAAAAGTAAAACAGATGGCTGCTTTCGCTCTTGGTTCCATTCAATGTGATGATAGTGGAGATCTTTTGGATAAAGTACGGGTGGTACAATCTGATACAGTGAGCTTAATTCAAGGAGGATTTACTGCTGGAAGCACTACATCTGAGTCAAGTTGCCAGGCAGTTAGGTTATCCTGTGATATTTTGGTTGAGAGGCTAGCTCCTCTCAAGCAAATATTGCAGGAGCAAATGGGTTCTATTAAATGGGAGACGCTTATTGAAAAGGCATACTTGCAAGCTTTGAACTTATCAGCAAGTTCTTTCTATGTTCCTGATTTTACTTCTATGCAATACCTTAACTATGGTGCTGCAGTGAGTGAGGTTGAGGTAGATCTTCTGACTGGAGAAACTAGAATATTGCAATCAGATATTATCTACGATTGTGGTCAGAGTCTCAACCCTGCTGTGGATTTAGGACAGATCGAAGGTGCTTTTGTTCAAGGAATTGGGTTTTTCATGCTTGAAGAATACATGGAAAATTCTGAGGGATTGGTGATTTCTAATGGTACATGGACGTATAAAATTCCTTCCATAGACACTATACCCAAGCAGTTCAATGTTGAAATACTAAATAGTGGACAACACAGTAATCGTGTTCTCTCTTCGAAAGCTTCTGGTGAGCCTCCATTACTTCTAGCAGTTTCAGTTCACTGCGCTGCAAGAGCTGCTATCAAAGAATCCAGAAAACAGCTTCTTCAATGGGGAGGCCTGGATGGGTCTGCTTCAATGTTCCAGATGGCCGTTCCAGCTACCATGCCTGTTGTGAAGGAGTTATGTGGGCTGGAAAGTGTGGAGTGCTACTTGGAATGGATTGCAGGCAGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004029 GO:0004031 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009687 GO:0009688 GO:0009850 GO:0009851 GO:0009987 GO:0010293 GO:0010817 GO:0016053 GO:0016106 GO:0016114 GO:0016143 GO:0016491 GO:0016620 GO:0016623 GO:0016903 GO:0018479 GO:0018488 GO:0019748 GO:0019752 GO:0019757 GO:0019760 GO:0019899 GO:0031625 GO:0032787 GO:0036094 GO:0042445 GO:0042446 GO:0043167 GO:0043168 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046394 GO:0048037 GO:0050302 GO:0050660 GO:0050662 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0097159 GO:1901135 GO:1901265 GO:1901363 GO:1901564 GO:1901576 GO:1901615 GO:1901617 GO:1901657 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00380 ko00906 ko01100 ko01110 map00380 map00906 map01100 map01110

Pfam Domains

Protein Families

Ald_Xan_dh_C Ald_Xan_dh_C2 CO_deh_flav_C FAD_binding_5 Fer2 Fer2_2

Protein Analysis

1021

Amino Acids

111.09

Weight (kDa)

5.92

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_5	PF00941	1 - 78	3.9e-18	FAD binding domain in molybdopterin dehydrogenase
CO_deh_flav_C	PF03450	96 - 201	7e-20	CO dehydrogenase flavoprotein C-terminal domain
Ald_Xan_dh_C	PF01315	269 - 377	2.5e-28	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
MoCoBD_1	PF02738	406 - 637	1.3e-80	Molybdopterin cofactor-binding domain
MoCoBD_2	PF20256	666 - 928	2.7e-74	Molybdopterin cofactor-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04580 AT2G27150 AT2G27150 AT2G27150 AT2G27150 AT2G27150 AT2G27150 AT3G43600
fragaria_vesca	FvH4_3g26980 FvH4_3g26980 FvH4_3g26980 FvH4_3g26980 FvH4_3g26980 FvH4_3g26980
malus_domestica	MD00G1162900.v1.1 MD03G1162200.v1.1 MD11G1178400.v1.1 MD11G1178500.v1.1
prunus_persica	Prupe.6G150900_v2.0.a1 Prupe.6G150900_v2.0.a1 Prupe.6G150900_v2.0.a1 Prupe.6G150900_v2.0.a1 Prupe.6G150900_v2.0.a1
pyrus_communis	pycom03g11520 pycom11g15240 pycom11g15280 pycom11g15360
rosa_chinensis	RchiOBHm_Chr5g0049511
rosa_laevigata	RLG00000034622
rosa_multiflora	Rmu_sc0001307.1_g000031
rosa_roxburghii	Rroxscaffold_1G00032200
rosa_rugosa	Rorug05G0248700
rosa_samantha	Rh5AG325300 Rh5BG336500 Rh5CG361200 Rh5DG348600
rosa_wichuraiana	Rw5G030710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	779
Acc65I	GGTACC	1 cut(s)	1007
AccB1I	GGYRCC	1 cut(s)	1007
AccI	GTMKAC	1 cut(s)	1970
AciI	CCGC	4 cut(s)	308, 1537, 1807, 2065
AclWI	GGATC	6 cut(s)	188, 201, 255, 268, 752, 997
AcoI	YGGCCR	2 cut(s)	1998, 2976
AcsI	RAATTY	8 cut(s)	52, 627, 908, 1105, 2042, 2076, 2716, 2760
AcuI	CTGAAG	5 cut(s)	69, 372, 555, 789, 1863
AfiI	CCNNNNNNNGG	7 cut(s)	232, 539, 974, 975, 1879, 2123, 2644
AflII	CTTAAG	1 cut(s)	1730
AflIII	ACRYGT	1 cut(s)	1858
AhdI	GACNNNNNGTC	1 cut(s)	835
AjnI	CCWGG	4 cut(s)	1813, 2122, 2355, 2946
Alw21I	GWGCWC	3 cut(s)	1516, 1729, 1753
Alw26I	GTCTC	5 cut(s)	1307, 2107, 2198, 2441, 2636
Alw44I	GTGCAC	2 cut(s)	1512, 1725
AlwI	GGATC	6 cut(s)	188, 201, 255, 268, 752, 997
Ama87I	CYCGRG	1 cut(s)	2082
AoxI	GGCC	5 cut(s)	1479, 1683, 1998, 2944, 2976
ApaLI	GTGCAC	2 cut(s)	1512, 1725
ApoI	RAATTY	8 cut(s)	52, 627, 908, 1105, 2042, 2076, 2716, 2760
AseI	ATTAAT	1 cut(s)	1667
Asp718I	GGTACC	1 cut(s)	1007
AspLEI	GCGC	2 cut(s)	1046, 2894
AspS9I	GGNCC	3 cut(s)	1195, 1684, 1811
AsuHPI	GGTGA	7 cut(s)	70, 821, 831, 1238, 1967, 2743, 2867
AsuII	TTCGAA	1 cut(s)	2843
AsuNHI	GCTAGC	1 cut(s)	2395
AvaI	CYCGRG	1 cut(s)	2082
AvaII	GGWCC	2 cut(s)	1195, 1811
BaeGI	GKGCMC	2 cut(s)	1516, 1729
BalI	TGGCCA	1 cut(s)	2000
BamHI	GGATCC	2 cut(s)	193, 260
BanI	GGYRCC	1 cut(s)	1007
BanII	GRGCYC	1 cut(s)	187
BarI	GAAGNNNNNNTAC	2 cut(s)	1595, 1627
BbsI	GAAGAC	2 cut(s)	1350, 1998
Bbv12I	GWGCWC	3 cut(s)	1516, 1729, 1753
BccI	CCATC	8 cut(s)	55, 926, 1628, 1675, 2141, 2209, 2945, 2968
BceAI	ACGGC	2 cut(s)	1466, 2963
BciT130I	CCWGG	4 cut(s)	1815, 2124, 2357, 2948
BclI	TGATCA	1 cut(s)	1255
BcoDI	GTCTC	5 cut(s)	1307, 2107, 2198, 2441, 2636
BfaI	CTAG	8 cut(s)	39, 144, 311, 1182, 1517, 2396, 2589, 2873
BfmI	CTRYAG	4 cut(s)	255, 289, 2091, 2547
BfrI	CTTAAG	1 cut(s)	1730
BglII	AGATCT	3 cut(s)	146, 2260, 2569
Bme1390I	CCNGG	4 cut(s)	1815, 2124, 2357, 2948
Bme18I	GGWCC	2 cut(s)	1195, 1811
BmeRI	GACNNNNNGTC	1 cut(s)	835
BmeT110I	CYCGRG	1 cut(s)	2082
BmgT120I	GGNCC	3 cut(s)	1195, 1684, 1811
BmiI	GGNNCC	8 cut(s)	195, 262, 531, 1009, 1197, 1686, 1812, 2236
BmrFI	CCNGG	4 cut(s)	1815, 2124, 2357, 2948
BmrI	ACTGGG	2 cut(s)	241, 2192
BmsI	GCATC	3 cut(s)	1603, 1663, 1874
BmtI	GCTAGC	1 cut(s)	2399
BmuI	ACTGGG	2 cut(s)	241, 2192
BpiI	GAAGAC	2 cut(s)	1350, 1998
BplI	GAGNNNNNCTC	4 cut(s)	2104, 2136, 2383, 2415
BpmI	CTGGAG	3 cut(s)	807, 2106, 2601
Bpu14I	TTCGAA	1 cut(s)	2843
BpuEI	CTTGAG	3 cut(s)	499, 1985, 2390
Bsa29I	ATCGAT	1 cut(s)	1671
BsaI	GGTCTC	2 cut(s)	2107, 2198
BsaJI	CCNNGG	3 cut(s)	1814, 1878, 2123
BsaXI	ACNNNNNCTCC	2 cut(s)	1444, 1474
Bsc4I	CCNNNNNNNGG	7 cut(s)	232, 539, 974, 975, 1879, 2123, 2644
Bse1I	ACTGG	5 cut(s)	236, 382, 761, 2187, 2584
Bse3DI	GCAATG	3 cut(s)	320, 700, 1918
BseBI	CCWGG	4 cut(s)	1815, 2124, 2357, 2948
BseCI	ATCGAT	1 cut(s)	1671
BseDI	CCNNGG	3 cut(s)	1814, 1878, 2123
BseGI	GGATG	4 cut(s)	1120, 1594, 1686, 2956
BseLI	CCNNNNNNNGG	7 cut(s)	232, 539, 974, 975, 1879, 2123, 2644
BseMI	GCAATG	3 cut(s)	320, 700, 1918
BseMII	CTCAG	6 cut(s)	40, 1266, 1397, 1410, 2334, 2712
BseNI	ACTGG	5 cut(s)	236, 382, 761, 2187, 2584
BseRI	GAGGAG	2 cut(s)	1178, 2391
BseSI	GKGCMC	2 cut(s)	1516, 1729
BsgI	GTGCAG	3 cut(s)	282, 768, 1844
BshFI	GGCC	5 cut(s)	1481, 1685, 2000, 2946, 2978
BshNI	GGYRCC	1 cut(s)	1007
BshVI	ATCGAT	1 cut(s)	1671
BsiHKAI	GWGCWC	3 cut(s)	1516, 1729, 1753
BsiHKCI	CYCGRG	1 cut(s)	2082
BsiWI	CGTACG	1 cut(s)	889
BslFI	GGGAC	3 cut(s)	436, 1181, 2003
BslI	CCNNNNNNNGG	7 cut(s)	232, 539, 974, 975, 1879, 2123, 2644
BsmAI	GTCTC	5 cut(s)	1307, 2107, 2198, 2441, 2636
BsmBI	CGTCTC	1 cut(s)	2441
BsmFI	GGGAC	3 cut(s)	436, 1181, 2003
BsmI	GAATGC	3 cut(s)	340, 1419, 2136
BsnI	GGCC	5 cut(s)	1481, 1685, 2000, 2946, 2978
Bso31I	GGTCTC	2 cut(s)	2107, 2198
BsoBI	CYCGRG	1 cut(s)	2082
Bsp119I	TTCGAA	1 cut(s)	2843
Bsp1286I	GDGCHC	4 cut(s)	187, 1516, 1729, 1753
Bsp19I	CCATGG	1 cut(s)	1878
BspACI	CCGC	4 cut(s)	308, 1537, 1807, 2065
BspANI	GGCC	5 cut(s)	1481, 1685, 2000, 2946, 2978
BspCNI	CTCAG	6 cut(s)	39, 1267, 1396, 1409, 2335, 2713
BspDI	ATCGAT	1 cut(s)	1671
BspHI	TCATGA	1 cut(s)	132
BspLI	GGNNCC	8 cut(s)	195, 262, 531, 1009, 1197, 1686, 1812, 2236
BspMAI	CTGCAG	2 cut(s)	259, 2551
BspOI	GCTAGC	1 cut(s)	2399
BspPI	GGATC	6 cut(s)	188, 201, 255, 268, 752, 997
BspT104I	TTCGAA	1 cut(s)	2843
BspT107I	GGYRCC	1 cut(s)	1007
BspTI	CTTAAG	1 cut(s)	1730
BspTNI	GGTCTC	2 cut(s)	2107, 2198
BsrDI	GCAATG	3 cut(s)	320, 700, 1918
BsrI	ACTGG	5 cut(s)	236, 382, 761, 2187, 2584
BssECI	CCNNGG	3 cut(s)	1814, 1878, 2123
BssNAI	GTATAC	1 cut(s)	1971
BssT1I	CCWWGG	1 cut(s)	1878
Bst1107I	GTATAC	1 cut(s)	1971
Bst2UI	CCWGG	4 cut(s)	1815, 2124, 2357, 2948
Bst4CI	ACNGT	6 cut(s)	124, 526, 617, 1616, 2299, 2825
Bst6I	CTCTTC	1 cut(s)	2845
BstAFI	CTTAAG	1 cut(s)	1730
BstAPI	GCANNNNNTGC	2 cut(s)	2416, 2903
BstBI	TTCGAA	1 cut(s)	2843
BstC8I	GCNNGC	6 cut(s)	770, 854, 1998, 2397, 2475, 3055
BstDEI	CTNAG	9 cut(s)	26, 669, 993, 1275, 1383, 1396, 2141, 2343, 2721
BstDSI	CCRYGG	1 cut(s)	1878
BstENI	CCTNNNNNAGG	1 cut(s)	537
BstF5I	GGATG	4 cut(s)	1120, 1594, 1686, 2956
BstHHI	GCGC	2 cut(s)	1046, 2894
BstMAI	GTCTC	5 cut(s)	1307, 2107, 2198, 2441, 2636
BstNI	CCWGG	4 cut(s)	1815, 2124, 2357, 2948
BstNSI	RCATGY	3 cut(s)	434, 1512, 1862
BstSCI	CCNGG	4 cut(s)	1813, 2122, 2355, 2946
BstSFI	CTRYAG	4 cut(s)	255, 289, 2091, 2547
BstSLI	GKGCMC	2 cut(s)	1516, 1729
BstV2I	GAAGAC	2 cut(s)	1350, 1998
BstX2I	RGATCY	6 cut(s)	146, 193, 260, 989, 2260, 2569
BstXI	CCANNNNNNTGG	1 cut(s)	1885
BstYI	RGATCY	6 cut(s)	146, 193, 260, 989, 2260, 2569
BstZ17I	GTATAC	1 cut(s)	1971
Bsu15I	ATCGAT	1 cut(s)	1671
BsuRI	GGCC	5 cut(s)	1481, 1685, 2000, 2946, 2978
BsuTUI	ATCGAT	1 cut(s)	1671
BtgI	CCRYGG	1 cut(s)	1878
BtgZI	GCGATG	2 cut(s)	1387, 2160
BtsCI	GGATG	4 cut(s)	1120, 1594, 1686, 2956
BtsI	GCAGTG	3 cut(s)	394, 2556, 2887
BtsIMutI	CAGTG	8 cut(s)	129, 394, 622, 1382, 1621, 2304, 2556, 2887
Cac8I	GCNNGC	6 cut(s)	770, 854, 1998, 2397, 2475, 3055
CciI	TCATGA	1 cut(s)	132
CfoI	GCGC	2 cut(s)	1046, 2894
Cfr13I	GGNCC	3 cut(s)	1195, 1684, 1811
ClaI	ATCGAT	1 cut(s)	1671
CseI	GACGC	2 cut(s)	1043, 2458
CspCI	CAANNNNNGTGG	2 cut(s)	1092, 1127
DdeI	CTNAG	9 cut(s)	26, 669, 993, 1275, 1383, 1396, 2141, 2343, 2721
DraI	TTTAAA	2 cut(s)	465, 958
DriI	GACNNNNNGTC	1 cut(s)	835
EaeI	YGGCCR	2 cut(s)	1998, 2976
Eam1104I	CTCTTC	1 cut(s)	2845
Eam1105I	GACNNNNNGTC	1 cut(s)	835
EarI	CTCTTC	1 cut(s)	2845
EciI	GGCGGA	1 cut(s)	2080
Eco130I	CCWWGG	1 cut(s)	1878
Eco147I	AGGCCT	1 cut(s)	2946
Eco24I	GRGCYC	1 cut(s)	187
Eco31I	GGTCTC	2 cut(s)	2107, 2198
Eco32I	GATATC	1 cut(s)	964
Eco47I	GGWCC	2 cut(s)	1195, 1811
Eco57I	CTGAAG	5 cut(s)	69, 372, 555, 789, 1863
Eco88I	CYCGRG	1 cut(s)	2082
EcoNI	CCTNNNNNAGG	1 cut(s)	537
EcoO109I	RGGNCCY	2 cut(s)	1195, 1811
EcoRII	CCWGG	4 cut(s)	1813, 2122, 2355, 2946
EcoRV	GATATC	1 cut(s)	964
EcoT14I	CCWWGG	1 cut(s)	1878
EcoT22I	ATGCAT	1 cut(s)	322
EcoT38I	GRGCYC	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	1878
Esp3I	CGTCTC	1 cut(s)	2441
FalI	AAGNNNNNCTT	4 cut(s)	559, 591, 2453, 2485
FaqI	GGGAC	3 cut(s)	436, 1181, 2003
FauI	CCCGC	1 cut(s)	1800
FauNDI	CATATG	1 cut(s)	709
FbaI	TGATCA	1 cut(s)	1255
FblI	GTMKAC	1 cut(s)	1970
FokI	GGATG	4 cut(s)	1127, 1581, 1693, 2963
FriOI	GRGCYC	1 cut(s)	187
FspBI	CTAG	8 cut(s)	39, 144, 311, 1182, 1517, 2396, 2589, 2873
GlaI	GCGC	2 cut(s)	1045, 2893
GsuI	CTGGAG	3 cut(s)	807, 2106, 2601
HaeIII	GGCC	5 cut(s)	1481, 1685, 2000, 2946, 2978
HgaI	GACGC	2 cut(s)	1043, 2458
HhaI	GCGC	2 cut(s)	1046, 2894
Hin6I	GCGC	2 cut(s)	1044, 2892
HinP1I	GCGC	2 cut(s)	1044, 2892
HindIII	AAGCTT	5 cut(s)	568, 801, 2011, 2475, 2847
HinfI	GANTC	7 cut(s)	116, 550, 703, 1623, 2345, 2629, 2915
HphI	GGTGA	7 cut(s)	70, 821, 831, 1238, 1967, 2743, 2867
Hpy166II	GTNNAC	8 cut(s)	206, 1292, 1514, 1727, 1958, 1971, 2816, 2887
Hpy8I	GTNNAC	8 cut(s)	206, 1292, 1514, 1727, 1958, 1971, 2816, 2887
HpyAV	CCTTC	6 cut(s)	93, 533, 1584, 2657, 2775, 2998
HpyCH4III	ACNGT	6 cut(s)	124, 526, 617, 1616, 2299, 2825
HpyCH4IV	ACGT	1 cut(s)	2753
HpyF3I	CTNAG	9 cut(s)	26, 669, 993, 1275, 1383, 1396, 2141, 2343, 2721
HpySE526I	ACGT	1 cut(s)	2753
HspAI	GCGC	2 cut(s)	1044, 2892
KpnI	GGTACC	1 cut(s)	1011
Ksp22I	TGATCA	1 cut(s)	1255
LmnI	GCTCC	4 cut(s)	788, 860, 2404, 2422
LweI	GCATC	3 cut(s)	1603, 1663, 1874
MaeI	CTAG	8 cut(s)	39, 144, 311, 1182, 1517, 2396, 2589, 2873
MaeII	ACGT	1 cut(s)	2753
MaeIII	GTNAC	4 cut(s)	241, 617, 837, 1226
MflI	RGATCY	6 cut(s)	146, 193, 260, 989, 2260, 2569
MhlI	GDGCHC	4 cut(s)	187, 1516, 1729, 1753
MlsI	TGGCCA	1 cut(s)	2000
MluNI	TGGCCA	1 cut(s)	2000
MlyI	GAGTC	3 cut(s)	559, 2354, 2638
MmeI	TCCRAC	3 cut(s)	144, 1600, 2149
Mox20I	TGGCCA	1 cut(s)	2000
Mph1103I	ATGCAT	1 cut(s)	322
MscI	TGGCCA	1 cut(s)	2000
MslI	CAYNNNNRTG	1 cut(s)	1883
Msp20I	TGGCCA	1 cut(s)	2000
MspCI	CTTAAG	1 cut(s)	1730
MspR9I	CCNGG	4 cut(s)	1815, 2124, 2357, 2948
Mva1269I	GAATGC	3 cut(s)	340, 1419, 2136
MvaI	CCWGG	4 cut(s)	1815, 2124, 2357, 2948
NcoI	CCATGG	1 cut(s)	1878
NdeI	CATATG	1 cut(s)	709
NheI	GCTAGC	1 cut(s)	2395
NlaIV	GGNNCC	8 cut(s)	195, 262, 531, 1009, 1197, 1686, 1812, 2236
NmuCI	GTSAC	3 cut(s)	617, 837, 1226
NsiI	ATGCAT	1 cut(s)	322
NspI	RCATGY	3 cut(s)	434, 1512, 1862
NspV	TTCGAA	1 cut(s)	2843
PaeR7I	CTCGAG	1 cut(s)	2082
PagI	TCATGA	1 cut(s)	132
PceI	AGGCCT	1 cut(s)	2946
PciI	ACATGT	1 cut(s)	1858
PctI	GAATGC	3 cut(s)	340, 1419, 2136
PfeI	GAWTC	4 cut(s)	116, 703, 1623, 2915
Pfl23II	CGTACG	1 cut(s)	889
PleI	GAGTC	3 cut(s)	558, 2353, 2637
PpsI	GAGTC	3 cut(s)	558, 2353, 2637
PpuMI	RGGWCCY	2 cut(s)	1195, 1811
PscI	ACATGT	1 cut(s)	1858
PshBI	ATTAAT	1 cut(s)	1667
PsiI	TTATAA	1 cut(s)	779
Psp5II	RGGWCCY	2 cut(s)	1195, 1811
Psp6I	CCWGG	4 cut(s)	1813, 2122, 2355, 2946
PspGI	CCWGG	4 cut(s)	1813, 2122, 2355, 2946
PspLI	CGTACG	1 cut(s)	889
PspN4I	GGNNCC	8 cut(s)	195, 262, 531, 1009, 1197, 1686, 1812, 2236
PspPI	GGNCC	3 cut(s)	1195, 1684, 1811
PspPPI	RGGWCCY	2 cut(s)	1195, 1811
PstI	CTGCAG	2 cut(s)	259, 2551
PsuI	RGATCY	6 cut(s)	146, 193, 260, 989, 2260, 2569
RseI	CAYNNNNRTG	1 cut(s)	1883
Sau96I	GGNCC	3 cut(s)	1195, 1684, 1811
SchI	GAGTC	3 cut(s)	559, 2354, 2638
ScrFI	CCNGG	4 cut(s)	1815, 2124, 2357, 2948
SduI	GDGCHC	4 cut(s)	187, 1516, 1729, 1753
SfaNI	GCATC	3 cut(s)	1603, 1663, 1874
SfcI	CTRYAG	4 cut(s)	255, 289, 2091, 2547
Sfr274I	CTCGAG	1 cut(s)	2082
SfuI	TTCGAA	1 cut(s)	2843
SinI	GGWCC	2 cut(s)	1195, 1811
SlaI	CTCGAG	1 cut(s)	2082
SmiMI	CAYNNNNRTG	1 cut(s)	1883
SmlI	CTYRAG	5 cut(s)	478, 1730, 1964, 2082, 2405
SmoI	CTYRAG	5 cut(s)	478, 1730, 1964, 2082, 2405
SseBI	AGGCCT	1 cut(s)	2946
SsiI	CCGC	4 cut(s)	308, 1537, 1807, 2065
SspI	AATATT	2 cut(s)	2415, 2595
SspMI	CTAG	8 cut(s)	39, 144, 311, 1182, 1517, 2396, 2589, 2873
StuI	AGGCCT	1 cut(s)	2946
StyD4I	CCNGG	4 cut(s)	1813, 2122, 2355, 2946
StyI	CCWWGG	1 cut(s)	1878
TaaI	ACNGT	6 cut(s)	124, 526, 617, 1616, 2299, 2825
TaiI	ACGT	1 cut(s)	2756
TaqI	TCGA	5 cut(s)	517, 1671, 2083, 2661, 2843
TatI	WGTACW	2 cut(s)	205, 2095
TfiI	GAWTC	4 cut(s)	116, 703, 1623, 2915
TscAI	CASTG	8 cut(s)	129, 401, 622, 1382, 1621, 2304, 2556, 2894
TseFI	GTSAC	3 cut(s)	617, 837, 1226
Tsp45I	GTSAC	3 cut(s)	617, 837, 1226
TspGWI	ACGGA	4 cut(s)	483, 825, 1147, 1427
TspRI	CASTG	8 cut(s)	129, 401, 622, 1382, 1621, 2304, 2556, 2894
Vha464I	CTTAAG	1 cut(s)	1730
VneI	GTGCAC	2 cut(s)	1512, 1725
VpaK11BI	GGWCC	2 cut(s)	1195, 1811
VspI	ATTAAT	1 cut(s)	1667
XagI	CCTNNNNNAGG	1 cut(s)	537
XapI	RAATTY	8 cut(s)	52, 627, 908, 1105, 2042, 2076, 2716, 2760
XbaI	TCTAGA	1 cut(s)	143
XceI	RCATGY	3 cut(s)	434, 1512, 1862
XhoI	CTCGAG	1 cut(s)	2082
XmiI	GTMKAC	1 cut(s)	1970
XspI	CTAG	8 cut(s)	39, 144, 311, 1182, 1517, 2396, 2589, 2873
Zsp2I	ATGCAT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.