Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003184

Physical Location & Seq

Genomic Coordinates Reverse (-)

15833939 .. 15843885

Gene Structure 9947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g15240.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4419 bp

ATGAAAATTGATCACACGATATATAATGAACGAACACGATTAAATGATTCCCGAATCTCAAAAAAAAATAGGAGAACATTCTCGTCCTTTACCAATCACAAAAAAGAAGGAAATTCTTCTGAAAATAAAATATGCCGTTATTACTTTTCAAATCGTCGTTTTGTTTGTTTCTTTTTCATTGTTATTGGAATGGTTGTTGGCTGGGTTCCTCTCGCTTTGCTCACAGAAATGGCCAACGAAAGAGACGCAGCGGCAGGAATCGGTGGCAGCCTAGTTTTTGCAGTTAACGGAGAGAGGTTTGAGCTCCCGACCGTTGATCCTTCAACCACTCTGCTCGCCTTCTTGCGTTCTCAGACGAGATTCAAAAGTGTCAAGCTCAGCTGCGGTGAAGGTGGTTGCGGTGCTTGTGTTGTGCTGCTGTCCAAGTACGACCCTGTTGTCGACGAAGTGAAAGATTTTACTGCAAGTTCATGTCTCACTCTGCTTTGCAGTATAAATGGATGTTCAATTACAACATCCGAAGGCCTTGGAAATATCAAAGACGGGTTCCACCCAATTCACCAAAGGATTGCTGGTTTCCATGCTTCTCAATGCGGCTTTTGTACTCCTGGCATGTGTGTTTCACTCTTTGGAGCTCTTGTCAATGCTGAAAAGGAGAATAGACCTGATCCCCCTCCTGGGTTCTCCAAGCTTTCTGTTTCCGAAGCTGAAAAGTCTATTGCAGGTAACCTCTGTCGATGTACTGGGTATCGACCAATTGTTGATGCCTGCAAGAGTTTCGCATCTGATGTTGACATGGAGGATTTGGGGTTCAACTCCTTTTGGAAAAAGGGAGATAGTAAGGAAGTAAAAGTAAAGAGTTTGCCTCTATATAACCGTAATGGTGACATCTGTACATTTCCGGACTTCTTAAAAAAAGAAATTTGTTCTTCCATGTCTTTGGATCCTACGAGATATGGTTGGTACAATCCTCTTAGAGTTGAGGAGCTTCAAAACTTATTGAAAGATAATGATTTTGATAATGCAAACGAGATGAAATTAGTTGTTGGAAACACAGGGACGGGCTATTACAAGGAGCTAAAGCGCTATGACAGATACATTGATCTCAGATGTGTTCCTGAATTATCAATGGTTAAGAAGGACCCTGTGGGGGTTGAGTTCGGATCAACTGTAACAATCTCTAAAGTTATTGAGTCTTTGAAGAAGAAAGAGAACGGTGGATCTCCATCAAGAGGTGGTGATGTGTCAAAAAAAATTGCCAATCATATGGAGAAAATTGCTTCAGGGTTCATCAGAAATACAGGTAGTATAGGAGGGAATTTGGTGATGGCACAGAGAAAATGTTTTCCTTCAGATATTGCTACAATACTTCTTGCTGTGGATTCAGAAGTAGATATAATGAATGGTGAAGAATCTGAAACGGTTATGTTAGAGGATTTTCTGAAAAGGCCTCCATTGGATCCGAAAAGTGTACTTTTAAGTGTTAAAATCCCAAATTGGGAAGCAGTTAGAAAAGTTTCTCCAGAAACCAACACCATGTTGCTTTTTGAAACCTATCGAGCTGCACCAAGACCCCTAGGAAGGGCATTAGCTTATTTAAATGCTGCCTTCCTAGCAGAGGTTTCGTTTGGTAAGATTTCCAATGGAATTATGGTGGATCATTGTCGTCTGGCATTTGGTGCTTATGGAACTAAACATGCAATTAGAGCAAGAAAGGTTGAGGAATTTTTAACTGGAAAAGTGCTGAGTCCTGGTGTTCTATATGACGCTATTAAATTAGTTAGGGATGTTGTGGTTCCTGAAGAAGGAACTACGAGCCCTGCTTACAGGTCAAGCTTGGCTGCCGGTTTTCTTTTCGAGTTCTTTAGCCCCTTAATTGACAGTGAAAGTTGCAAAGGATTCTTGGGAAATACTTTGTTGGCCGATGCTTCCAAGTTAAAAAGGAACAAAAGTGCTAGCGATAAGATGAGAACTGTTCTGTCATCTGGTAAACAGGTGATTGAATTAAGTACAGAGTATGATCCGGTTGGTAAACCAATTACAAAATCTGGAGGTCTCATACAAGCTTCAGGTGAGGCAGTCTATGTAGACGACATTCCATCTCCGAAAAATTGCTTACATGGAGCGTTCATTTATAGTACAAAGCCTTTGGCTAGAGTGAAGGGAATAAAACTTGAACCTAAATCACATCCAGGAGTTACTGCACTGATATCTTTCAAAGATGTTCCCAAGTCTGGGGAGAACATAGGGTCCAAGACTTTTCTTGGTACAGAACCTCTGTTTGCTAATGATCTTACAGAATGGGCTGGTCAGCGTCTTGCTTTCGTGGTAGCAGATACGCAGAAACATGCAGATATGGCTACAAACTTTGCGGTGGTTGATTATAACATGGAAGATGTAGATCCACCTATCTTATCAGTCGAAGAGGCAGTTAAGAGAGCAAGTTTTTTTGAGGTCCCTCCTTTCTTGTATCCGAAACAGGTCGGTGACATATCAAATGGAATGGCTGCAGCTGATCACAAGATTATTTCTGCTGAGATCAAACTTGGTTCACAATACTATTTCTACATGGAGACACAAACAGCCCTTGCTGTACCAGATGAAGACAACTGCATGGTGGTTTACACTTCAAGTCAAGTGCCTGAGTATGCACACTCTACAATTGCAAAATGTCTTGGTATTCCTGAAAATAATATTCGTGTAATTACAAGAAGGGTCGGAGGGGGCTTCGGTGGAAAGGCCATGCAATCAATGCCTGTCGCAACTGCATGTGCTCTTGCAGCACACAAATTACATAGACCTGTACGGATATATCTCAATCGCAAGACTGATATGATAATGGCTGGAGGAAGGCATCCCATGAAGATAACTTACAGTGTGGGATTCAAGTCTGATGGGAAGATTACAGCTTTAGAACTTGAGATATTGATAAATGCAGGGATTTCCATAGACTTTAGTCCATTATTGCCAAAAAGTATTGTGACTGCGCTTAAGAAGTATGACTGGGGTGCTCTGGCTTTCGATATCAAGGTGTGCAAAACAAACACTCCAAGTAGGTCTGCTATGCGGGCCCCTGGGGAGGTGCAGGGGTCATTTATCGCTGAAGCTGTAATTGAACATGTAGCATCCATCCTTTCTATAGAAGTAGATTCTGTGAGAAGCGTTAATCTTCACACATCTCACAGCCTTGATTTGTTTTACGAGCAGAGCGCTGGTGAACCCCTGGAGTATACTTTACCATTGATATGGAACAAGTTGTCCATGTCTTCAAGCTTTAACCCAAGGACTGAGATTGTAAAAGAATTTAATAGGTGTAATAAATGGCAGAAAAGAGGAATTTCTCGAGTACCGATATTGTATGAAGTGTCATTGAGGCCAACTCCGGGAAAAGTAGGCATTTTAAGTGATGGGTCTGTTGTTGTTGAAGTTGGAGGAATTGAACTGGGTCAGGGGCTCTGGACGAAGGTAAAACAGGTGACAGCTTTTGCTCTTGGTTCGATTCAATGTGATGGTAGTGGAGATTTCTTGGATAAAATACGGGTGGTGCAATCAGATACATTGAGCTTAATTCAAGGGGGAATGACTGCTGGGAGCACTACATCTGAGACAAGCTGTGAGGCAGTTAGACTTTGCTGTAATATTTTGGTTGAGAGGTTAGCTACTCTCAAGGGGAGATTGAAGGAGCAAATGGGCTCTATTAACTGGGAGACTCTTATTCAGCAGGCATCCTTGCAAGATGTGAACTTATCAGCAAGTTCTTATTATGTCCCTGATTCTGCTTCCAGGGCATACCTTAACTATGGTGCTGCTGTGAGTGAGGTGGAGGTAAACGTTCTGACTGGACAAACCACAATTCTGCGATCGGATATTATCTACGATTGTGGTCAGAGTCTCAACCCTGCTGTGGATTTAGGACAGATCGAAGGTTCTTTTGTTCAGGGTATTGGGTTTTTCATGCTTGAAGAGTACTCGGAAAACTCTGATGGGTTGGTGATTTCAGAAGGTACATGGACATATAAGATTCCTACGGTGGACACCATACCCAAACAGTTCAATGTTGAAGTATTGAACAGTGGGCATCATAAAAAACACGTGCTCTCTTCAAAAGCTTCTGGTGAGCCACCATTACTTCTTGCGGTTTCTGTTCACTGCGCGACAAGGGCGGCCATTAAAGAATCAAGAAAACAGCTTCTTCAGTGGGGCGGCCTAGATGGATCGGCATCAATATTCCAGTTAGATGTTCCTGCTACCATGCCTGTTGTGAAGGAGCTGTGTGGACTGGAAGCTGTGGAGAGGTACTTGGAATGGATTGTAGACCAAGGTTCATTCGACCGGAGAATGGTTCGTAATCTCGGAGATTGGGTTGTTTTCTGTCTATATTTATATTTGAGGAAAATTCTATGCAGTGAGAGTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004029 GO:0004031 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009687 GO:0009688 GO:0009850 GO:0009851 GO:0009987 GO:0010293 GO:0010817 GO:0016053 GO:0016106 GO:0016114 GO:0016143 GO:0016491 GO:0016620 GO:0016623 GO:0016903 GO:0018479 GO:0018488 GO:0019748 GO:0019752 GO:0019757 GO:0019760 GO:0019899 GO:0031625 GO:0032787 GO:0036094 GO:0042445 GO:0042446 GO:0043167 GO:0043168 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046394 GO:0048037 GO:0050302 GO:0050660 GO:0050662 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0097159 GO:1901135 GO:1901265 GO:1901363 GO:1901564 GO:1901576 GO:1901615 GO:1901617 GO:1901657 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00380 ko00906 ko01100 ko01110 map00380 map00906 map01100 map01110

Pfam Domains

Protein Families

Ald_Xan_dh_C Ald_Xan_dh_C2 CO_deh_flav_C FAD_binding_5 Fer2 Fer2_2

Protein Analysis

1473

Amino Acids

161.4

Weight (kDa)

7.41

Isoelectric Point (pI)

36.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04580 AT2G27150 AT2G27150 AT2G27150 AT2G27150 AT2G27150 AT2G27150 AT3G43600
fragaria_vesca	FvH4_3g26980 FvH4_3g26980 FvH4_3g26980 FvH4_3g26980 FvH4_3g26980 FvH4_3g26980
malus_domestica	MD00G1162900.v1.1 MD03G1162200.v1.1 MD11G1178400.v1.1 MD11G1178500.v1.1
prunus_persica	Prupe.6G150900_v2.0.a1 Prupe.6G150900_v2.0.a1 Prupe.6G150900_v2.0.a1 Prupe.6G150900_v2.0.a1 Prupe.6G150900_v2.0.a1
pyrus_communis	pycom03g11520 pycom11g15240 pycom11g15280 pycom11g15360
rosa_chinensis	RchiOBHm_Chr5g0049511
rosa_laevigata	RLG00000034622
rosa_multiflora	Rmu_sc0001307.1_g000031
rosa_roxburghii	Rroxscaffold_1G00032200
rosa_rugosa	Rorug05G0248700
rosa_samantha	Rh5AG325300 Rh5BG336500 Rh5CG361200 Rh5DG348600
rosa_wichuraiana	Rw5G030710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2385
AasI	GACNNNNNNGTC	1 cut(s)	437
Acc36I	ACCTGC	1 cut(s)	713
AccI	GTMKAC	4 cut(s)	441, 2088, 3230, 4314
AccII	CGCG	1 cut(s)	4154
AccIII	TCCGGA	1 cut(s)	901
AciI	CCGC	9 cut(s)	251, 384, 399, 594, 2372, 3067, 4136, 4163, 4203
AclI	AACGTT	1 cut(s)	3831
AcoI	YGGCCR	3 cut(s)	231, 1920, 4164
AcsI	RAATTY	7 cut(s)	112, 921, 1318, 1724, 3302, 3336, 4395
AcuI	CTGAAG	6 cut(s)	1266, 1335, 1821, 2052, 3123, 4178
AcvI	CACGTG	1 cut(s)	4093
AfeI	AGCGCT	2 cut(s)	1085, 3211
AflII	CTTAAG	1 cut(s)	2990
AflIII	ACRYGT	2 cut(s)	3118, 4090
AjnI	CCWGG	7 cut(s)	607, 676, 1750, 2191, 3073, 3222, 3782
AloI	GAACNNNNNNTCC	6 cut(s)	794, 826, 2234, 2266, 3242, 3274
Alw21I	GWGCWC	6 cut(s)	306, 637, 2776, 3013, 3596, 4098
Alw26I	GTCTC	7 cut(s)	237, 479, 2060, 2567, 3599, 3701, 3896
Ama87I	CYCGRG	1 cut(s)	3342
Aor13HI	TCCGGA	1 cut(s)	901
Aor51HI	AGCGCT	2 cut(s)	1085, 3211
AoxI	GGCC	9 cut(s)	231, 523, 1448, 1920, 2739, 3069, 3374, 4164, 4204
ApaI	GGGCCC	1 cut(s)	3073
ApoI	RAATTY	7 cut(s)	112, 921, 1318, 1724, 3302, 3336, 4395
Asp700I	GAANNNNTTC	2 cut(s)	115, 1516
AspA2I	CCTAGG	1 cut(s)	1576
AspLEI	GCGC	4 cut(s)	1086, 2989, 3212, 4154
AspS9I	GGNCC	5 cut(s)	1141, 2250, 2455, 3069, 3070
AsuC2I	CCSGG	1 cut(s)	3384
AsuNHI	GCTAGC	1 cut(s)	1955
AvaI	CYCGRG	1 cut(s)	3342
AvaII	GGWCC	3 cut(s)	1141, 2250, 2455
AvrII	CCTAGG	1 cut(s)	1576
BaeGI	GKGCMC	1 cut(s)	3073
BalI	TGGCCA	1 cut(s)	233
BamHI	GGATCC	2 cut(s)	943, 1459
BanII	GRGCYC	6 cut(s)	306, 637, 1820, 3073, 3456, 3695
BarI	GAAGNNNNNNTAC	2 cut(s)	2855, 2887
BbrPI	CACGTG	1 cut(s)	4093
BbsI	GAAGAC	2 cut(s)	2610, 3258
Bbv12I	GWGCWC	6 cut(s)	306, 637, 2776, 3013, 3596, 4098
BccI	CCATC	9 cut(s)	1234, 1321, 2107, 2888, 3137, 3401, 3503, 3977, 4205
BceAI	ACGGC	1 cut(s)	120
BcgI	CGANNNNNNTGC	4 cut(s)	760, 794, 1605, 1639
BciT130I	CCWGG	7 cut(s)	609, 678, 1752, 2193, 3075, 3224, 3784
BciVI	GTATCC	1 cut(s)	2481
BclI	TGATCA	2 cut(s)	10, 2515
BcnI	CCSGG	1 cut(s)	3384
BcoDI	GTCTC	7 cut(s)	237, 479, 2060, 2567, 3599, 3701, 3896
BfaI	CTAG	6 cut(s)	272, 1577, 1613, 1956, 2154, 4208
BfmI	CTRYAG	2 cut(s)	2508, 3138
BfoI	RGCGCY	2 cut(s)	1087, 3213
BfrI	CTTAAG	1 cut(s)	2990
BfuAI	ACCTGC	1 cut(s)	713
BfuI	GTATCC	1 cut(s)	2481
BlnI	CCTAGG	1 cut(s)	1576
BlpI	GCTNAGC	1 cut(s)	377
BmcAI	AGTACT	1 cut(s)	3968
Bme1390I	CCNGG	8 cut(s)	609, 678, 1752, 2193, 3075, 3224, 3384, 3784
Bme18I	GGWCC	3 cut(s)	1141, 2250, 2455
BmeT110I	CYCGRG	1 cut(s)	3342
BmgT120I	GGNCC	5 cut(s)	1141, 2250, 2455, 3069, 3070
BmrFI	CCNGG	8 cut(s)	609, 678, 1752, 2193, 3075, 3224, 3384, 3784
BmrI	ACTGGG	4 cut(s)	753, 3013, 3452, 3712
BmsI	GCATC	8 cut(s)	754, 791, 1915, 2863, 3134, 3734, 4087, 4229
BmtI	GCTAGC	1 cut(s)	1959
BmuI	ACTGGG	4 cut(s)	753, 3013, 3452, 3712
BoxI	GACNNNNGTC	1 cut(s)	2955
BpiI	GAAGAC	2 cut(s)	2610, 3258
BplI	GAGNNNNNCTC	4 cut(s)	850, 882, 3364, 3396
BpmI	CTGGAG	4 cut(s)	1506, 2070, 2865, 3245
Bpu1102I	GCTNAGC	1 cut(s)	377
BpuEI	CTTGAG	2 cut(s)	2939, 3650
BpuMI	CCSGG	1 cut(s)	3384
BsaAI	YACGTR	1 cut(s)	4093
BsaBI	GATNNNNATC	3 cut(s)	1225, 2400, 4219
BsaI	GGTCTC	1 cut(s)	2060
BsaJI	CCNNGG	9 cut(s)	526, 677, 1576, 3073, 3074, 3222, 3281, 3783, 4318
BsaWI	WCCGGW	3 cut(s)	901, 2023, 4332
BsaXI	ACNNNNNCTCC	6 cut(s)	624, 654, 3031, 3061, 4347, 4377
Bse118I	RCCGGY	1 cut(s)	1844
Bse1I	ACTGG	8 cut(s)	748, 1738, 3008, 3447, 3707, 3844, 4231, 4284
Bse8I	GATNNNNATC	3 cut(s)	1225, 2400, 4219
BseAI	TCCGGA	1 cut(s)	901
BseBI	CCWGG	7 cut(s)	609, 678, 1752, 2193, 3075, 3224, 3784
BseDI	CCNNGG	9 cut(s)	526, 677, 1576, 3073, 3074, 3222, 3281, 3783, 4318
BseGI	GGATG	8 cut(s)	506, 515, 1792, 2188, 2854, 3125, 3129, 3725
BseJI	GATNNNNATC	3 cut(s)	1225, 2400, 4219
BseMII	CTCAG	8 cut(s)	365, 391, 1120, 1736, 2526, 2634, 3279, 3594
BseNI	ACTGG	8 cut(s)	748, 1738, 3008, 3447, 3707, 3844, 4231, 4284
BseRI	GAGGAG	1 cut(s)	998
BseSI	GKGCMC	1 cut(s)	3073
BseYI	CCCAGC	2 cut(s)	201, 3587
BsgI	GTGCAG	3 cut(s)	1548, 2187, 3104
Bsh1236I	CGCG	1 cut(s)	4154
Bsh1285I	CGRYCG	3 cut(s)	312, 3863, 4333
BshFI	GGCC	9 cut(s)	233, 525, 1450, 1922, 2741, 3071, 3376, 4166, 4206
BsiEI	CGRYCG	3 cut(s)	312, 3863, 4333
BsiHKAI	GWGCWC	6 cut(s)	306, 637, 2776, 3013, 3596, 4098
BsiHKCI	CYCGRG	1 cut(s)	3342
BsiSI	CCGG	5 cut(s)	902, 1845, 2024, 3383, 4333
BslFI	GGGAC	3 cut(s)	1072, 2441, 3752
BsmAI	GTCTC	7 cut(s)	237, 479, 2060, 2567, 3599, 3701, 3896
BsmBI	CGTCTC	1 cut(s)	237
BsmFI	GGGAC	3 cut(s)	1072, 2441, 3752
BsnI	GGCC	9 cut(s)	233, 525, 1450, 1922, 2741, 3071, 3376, 4166, 4206
Bso31I	GGTCTC	1 cut(s)	2060
BsoBI	CYCGRG	1 cut(s)	3342
Bsp120I	GGGCCC	1 cut(s)	3069
Bsp13I	TCCGGA	1 cut(s)	901
Bsp1407I	TGTACA	1 cut(s)	893
Bsp1720I	GCTNAGC	1 cut(s)	377
BspACI	CCGC	9 cut(s)	251, 384, 399, 594, 2372, 3067, 4136, 4163, 4203
BspANI	GGCC	9 cut(s)	233, 525, 1450, 1922, 2741, 3071, 3376, 4166, 4206
BspCNI	CTCAG	8 cut(s)	364, 390, 1119, 1737, 2527, 2635, 3280, 3595
BspEI	TCCGGA	1 cut(s)	901
BspFNI	CGCG	1 cut(s)	4154
BspMAI	CTGCAG	1 cut(s)	2512
BspMI	ACCTGC	1 cut(s)	713
BspOI	GCTAGC	1 cut(s)	1959
BspTI	CTTAAG	1 cut(s)	2990
BspTNI	GGTCTC	1 cut(s)	2060
BsrFI	RCCGGY	1 cut(s)	1844
BsrGI	TGTACA	1 cut(s)	893
BsrI	ACTGG	8 cut(s)	748, 1738, 3008, 3447, 3707, 3844, 4231, 4284
BssAI	RCCGGY	1 cut(s)	1844
BssECI	CCNNGG	9 cut(s)	526, 677, 1576, 3073, 3074, 3222, 3281, 3783, 4318
BssNAI	GTATAC	1 cut(s)	3231
BssT1I	CCWWGG	4 cut(s)	526, 1576, 3281, 4318
Bst1107I	GTATAC	1 cut(s)	3231
Bst2UI	CCWGG	7 cut(s)	609, 678, 1752, 2193, 3075, 3224, 3784
Bst6I	CTCTTC	3 cut(s)	2418, 3957, 4105
BstAFI	CTTAAG	1 cut(s)	2990
BstAPI	GCANNNNNTGC	2 cut(s)	1679, 2752
BstAUI	TGTACA	1 cut(s)	893
BstBAI	YACGTR	1 cut(s)	4093
BstC8I	GCNNGC	5 cut(s)	336, 769, 1957, 3069, 3723
BstDEI	CTNAG	9 cut(s)	351, 377, 974, 1106, 1745, 2535, 2643, 3288, 3603
BstEII	GGTNACC	1 cut(s)	725
BstENI	CCTNNNNNAGG	2 cut(s)	1616, 1803
BstF5I	GGATG	8 cut(s)	506, 515, 1792, 2188, 2854, 3125, 3129, 3725
BstFNI	CGCG	1 cut(s)	4154
BstH2I	RGCGCY	2 cut(s)	1087, 3213
BstHHI	GCGC	4 cut(s)	1086, 2989, 3212, 4154
BstMAI	GTCTC	7 cut(s)	237, 479, 2060, 2567, 3599, 3701, 3896
BstMCI	CGRYCG	3 cut(s)	312, 3863, 4333
BstMWI	GCNNNNNNNGC	9 cut(s)	1613, 1679, 1706, 2357, 2752, 2780, 3068, 3785, 4160
BstNI	CCWGG	7 cut(s)	609, 678, 1752, 2193, 3075, 3224, 3784
BstNSI	RCATGY	5 cut(s)	616, 1700, 2351, 2772, 3122
BstPAI	GACNNNNGTC	1 cut(s)	2955
BstPI	GGTNACC	1 cut(s)	725
BstSCI	CCNGG	8 cut(s)	607, 676, 1750, 2191, 3073, 3222, 3382, 3782
BstSFI	CTRYAG	2 cut(s)	2508, 3138
BstSLI	GKGCMC	1 cut(s)	3073
BstUI	CGCG	1 cut(s)	4154
BstV2I	GAAGAC	2 cut(s)	2610, 3258
BstX2I	RGATCY	4 cut(s)	943, 1220, 1459, 2401
BstXI	CCANNNNNNTGG	3 cut(s)	940, 1267, 3246
BstYI	RGATCY	4 cut(s)	943, 1220, 1459, 2401
BstZ17I	GTATAC	1 cut(s)	3231
BsuI	GTATCC	1 cut(s)	2481
BsuRI	GGCC	9 cut(s)	233, 525, 1450, 1922, 2741, 3071, 3376, 4166, 4206
BtsCI	GGATG	8 cut(s)	506, 515, 1792, 2188, 2854, 3125, 3129, 3725
BtsI	GCAGTG	2 cut(s)	4147, 4411
BtsIMutI	CAGTG	7 cut(s)	1888, 2204, 2881, 4078, 4147, 4202, 4411
BveI	ACCTGC	1 cut(s)	713
Cac8I	GCNNGC	5 cut(s)	336, 769, 1957, 3069, 3723
CfoI	GCGC	4 cut(s)	1086, 2989, 3212, 4154
Cfr10I	RCCGGY	1 cut(s)	1844
Cfr13I	GGNCC	5 cut(s)	1141, 2250, 2455, 3069, 3070
CseI	GACGC	3 cut(s)	254, 1775, 2303
DdeI	CTNAG	9 cut(s)	351, 377, 974, 1106, 1745, 2535, 2643, 3288, 3603
DpnI	GATC	2 cut(s)	12, 318
DraI	TTTAAA	1 cut(s)	1599
DrdI	GACNNNNNNGTC	1 cut(s)	437
DseDI	GACNNNNNNGTC	1 cut(s)	437
EaeI	YGGCCR	3 cut(s)	231, 1920, 4164
Eam1104I	CTCTTC	3 cut(s)	2418, 3957, 4105
EarI	CTCTTC	3 cut(s)	2418, 3957, 4105
Ecl136II	GAGCTC	2 cut(s)	304, 635
Eco130I	CCWWGG	4 cut(s)	526, 1576, 3281, 4318
Eco147I	AGGCCT	2 cut(s)	525, 1450
Eco24I	GRGCYC	6 cut(s)	306, 637, 1820, 3073, 3456, 3695
Eco31I	GGTCTC	1 cut(s)	2060
Eco32I	GATATC	2 cut(s)	2211, 3025
Eco47I	GGWCC	3 cut(s)	1141, 2250, 2455
Eco47III	AGCGCT	2 cut(s)	1085, 3211
Eco53kI	GAGCTC	2 cut(s)	304, 635
Eco57I	CTGAAG	6 cut(s)	1266, 1335, 1821, 2052, 3123, 4178
Eco72I	CACGTG	1 cut(s)	4093
Eco88I	CYCGRG	1 cut(s)	3342
Eco91I	GGTNACC	1 cut(s)	725
EcoICRI	GAGCTC	2 cut(s)	304, 635
EcoNI	CCTNNNNNAGG	2 cut(s)	1616, 1803
EcoO109I	RGGNCCY	3 cut(s)	1141, 2455, 3070
EcoO65I	GGTNACC	1 cut(s)	725
EcoRII	CCWGG	7 cut(s)	607, 676, 1750, 2191, 3073, 3222, 3782
EcoRV	GATATC	2 cut(s)	2211, 3025
EcoT14I	CCWWGG	4 cut(s)	526, 1576, 3281, 4318
EcoT38I	GRGCYC	6 cut(s)	306, 637, 1820, 3073, 3456, 3695
ErhI	CCWWGG	4 cut(s)	526, 1576, 3281, 4318
Esp3I	CGTCTC	1 cut(s)	237
FaqI	GGGAC	3 cut(s)	1072, 2441, 3752
FauI	CCCGC	1 cut(s)	3060
FauNDI	CATATG	1 cut(s)	1266
FbaI	TGATCA	2 cut(s)	10, 2515
FblI	GTMKAC	4 cut(s)	441, 2088, 3230, 4314
FokI	GGATG	8 cut(s)	502, 513, 1799, 2175, 2841, 3112, 3116, 3712
FriOI	GRGCYC	6 cut(s)	306, 637, 1820, 3073, 3456, 3695
FspBI	CTAG	6 cut(s)	272, 1577, 1613, 1956, 2154, 4208
GlaI	GCGC	4 cut(s)	1085, 2988, 3211, 4153
GsaI	CCCAGC	2 cut(s)	205, 3591
GsuI	CTGGAG	4 cut(s)	1506, 2070, 2865, 3245
HaeII	RGCGCY	2 cut(s)	1087, 3213
HaeIII	GGCC	9 cut(s)	233, 525, 1450, 1922, 2741, 3071, 3376, 4166, 4206
HapII	CCGG	5 cut(s)	902, 1845, 2024, 3383, 4333
HgaI	GACGC	3 cut(s)	254, 1775, 2303
HhaI	GCGC	4 cut(s)	1086, 2989, 3212, 4154
Hin6I	GCGC	4 cut(s)	1084, 2987, 3210, 4152
HinP1I	GCGC	4 cut(s)	1084, 2987, 3210, 4152
HincII	GTYRAC	3 cut(s)	286, 442, 793
HindII	GTYRAC	3 cut(s)	286, 442, 793
HindIII	AAGCTT	5 cut(s)	689, 1834, 2064, 3271, 4107
HpaI	GTTAAC	1 cut(s)	286
HpaII	CCGG	5 cut(s)	902, 1845, 2024, 3383, 4333
Hpy99I	CGWCG	2 cut(s)	159, 446
HpyCH4IV	ACGT	2 cut(s)	3831, 4092
HpyF10VI	GCNNNNNNNGC	9 cut(s)	1613, 1679, 1706, 2357, 2752, 2780, 3068, 3785, 4160
HpyF3I	CTNAG	9 cut(s)	351, 377, 974, 1106, 1745, 2535, 2643, 3288, 3603
HpySE526I	ACGT	2 cut(s)	3831, 4092
HspAI	GCGC	4 cut(s)	1084, 2987, 3210, 4152
Kpn2I	TCCGGA	1 cut(s)	901
Ksp22I	TGATCA	2 cut(s)	10, 2515
KspAI	GTTAAC	1 cut(s)	286
LmnI	GCTCC	8 cut(s)	309, 632, 985, 1075, 2123, 3591, 3682, 4267
LweI	GCATC	8 cut(s)	754, 791, 1915, 2863, 3134, 3734, 4087, 4229
MaeI	CTAG	6 cut(s)	272, 1577, 1613, 1956, 2154, 4208
MaeII	ACGT	2 cut(s)	3831, 4092
MaeIII	GTNAC	7 cut(s)	725, 884, 1171, 2197, 2486, 2980, 3475
MfeI	CAATTG	2 cut(s)	756, 2661
MflI	RGATCY	4 cut(s)	943, 1220, 1459, 2401
MlsI	TGGCCA	1 cut(s)	233
MluNI	TGGCCA	1 cut(s)	233
MlyI	GAGTC	4 cut(s)	1202, 1756, 3703, 3898
MmeI	TCCRAC	3 cut(s)	1027, 2698, 3409
Mox20I	TGGCCA	1 cut(s)	233
MroI	TCCGGA	1 cut(s)	901
MroXI	GAANNNNTTC	2 cut(s)	115, 1516
MscI	TGGCCA	1 cut(s)	233
MslI	CAYNNNNRTG	2 cut(s)	227, 3244
Msp20I	TGGCCA	1 cut(s)	233
MspA1I	CMGCKG	3 cut(s)	251, 381, 2513
MspCI	CTTAAG	1 cut(s)	2990
MspI	CCGG	5 cut(s)	902, 1845, 2024, 3383, 4333
MspR9I	CCNGG	8 cut(s)	609, 678, 1752, 2193, 3075, 3224, 3384, 3784
MunI	CAATTG	2 cut(s)	756, 2661
MvaI	CCWGG	7 cut(s)	609, 678, 1752, 2193, 3075, 3224, 3784
MvnI	CGCG	1 cut(s)	4154
MwoI	GCNNNNNNNGC	9 cut(s)	1613, 1679, 1706, 2357, 2752, 2780, 3068, 3785, 4160
NciI	CCSGG	1 cut(s)	3384
NdeI	CATATG	1 cut(s)	1266
NheI	GCTAGC	1 cut(s)	1955
NmuCI	GTSAC	4 cut(s)	884, 2486, 2980, 3475
NspI	RCATGY	5 cut(s)	616, 1700, 2351, 2772, 3122
PaeR7I	CTCGAG	1 cut(s)	3342
PasI	CCCWGGG	1 cut(s)	3074
PceI	AGGCCT	2 cut(s)	525, 1450
PciI	ACATGT	1 cut(s)	3118
PdmI	GAANNNNTTC	2 cut(s)	115, 1516
PfoI	TCCNGGA	2 cut(s)	2191, 3382
Ple19I	CGATCG	1 cut(s)	3863
PleI	GAGTC	4 cut(s)	1201, 1755, 3703, 3897
PmaCI	CACGTG	1 cut(s)	4093
PmlI	CACGTG	1 cut(s)	4093
PpsI	GAGTC	4 cut(s)	1201, 1755, 3703, 3897
Ppu21I	YACGTR	1 cut(s)	4093
PpuMI	RGGWCCY	2 cut(s)	1141, 2455
PscI	ACATGT	1 cut(s)	3118
PshAI	GACNNNNGTC	1 cut(s)	2955
PsiI	TTATAA	1 cut(s)	2385
Psp124BI	GAGCTC	2 cut(s)	306, 637
Psp1406I	AACGTT	1 cut(s)	3831
Psp5II	RGGWCCY	2 cut(s)	1141, 2455
Psp6I	CCWGG	7 cut(s)	607, 676, 1750, 2191, 3073, 3222, 3782
PspCI	CACGTG	1 cut(s)	4093
PspEI	GGTNACC	1 cut(s)	725
PspFI	CCCAGC	2 cut(s)	201, 3587
PspGI	CCWGG	7 cut(s)	607, 676, 1750, 2191, 3073, 3222, 3782
PspOMI	GGGCCC	1 cut(s)	3069
PspPI	GGNCC	5 cut(s)	1141, 2250, 2455, 3069, 3070
PspPPI	RGGWCCY	2 cut(s)	1141, 2455
PstI	CTGCAG	1 cut(s)	2512
PsuI	RGATCY	4 cut(s)	943, 1220, 1459, 2401
PvuI	CGATCG	1 cut(s)	3863
PvuII	CAGCTG	2 cut(s)	381, 2513
RseI	CAYNNNNRTG	2 cut(s)	227, 3244
SacI	GAGCTC	2 cut(s)	306, 637
SalI	GTCGAC	1 cut(s)	440
Sau96I	GGNCC	5 cut(s)	1141, 2250, 2455, 3069, 3070
ScaI	AGTACT	1 cut(s)	3968
SchI	GAGTC	4 cut(s)	1202, 1756, 3703, 3898
ScrFI	CCNGG	8 cut(s)	609, 678, 1752, 2193, 3075, 3224, 3384, 3784
SfaNI	GCATC	8 cut(s)	754, 791, 1915, 2863, 3134, 3734, 4087, 4229
SfcI	CTRYAG	2 cut(s)	2508, 3138
Sfr274I	CTCGAG	1 cut(s)	3342
SinI	GGWCC	3 cut(s)	1141, 2250, 2455
SlaI	CTCGAG	1 cut(s)	3342
SmiI	ATTTAAAT	1 cut(s)	1599
SmiMI	CAYNNNNRTG	2 cut(s)	227, 3244
SmlI	CTYRAG	4 cut(s)	2918, 2990, 3342, 3665
SmoI	CTYRAG	4 cut(s)	2918, 2990, 3342, 3665
SseBI	AGGCCT	2 cut(s)	525, 1450
SsiI	CCGC	9 cut(s)	251, 384, 399, 594, 2372, 3067, 4136, 4163, 4203
SspI	AATATT	3 cut(s)	2695, 3640, 4227
SspMI	CTAG	6 cut(s)	272, 1577, 1613, 1956, 2154, 4208
SstI	GAGCTC	2 cut(s)	306, 637
StuI	AGGCCT	2 cut(s)	525, 1450
StyD4I	CCNGG	8 cut(s)	607, 676, 1750, 2191, 3073, 3222, 3382, 3782
StyI	CCWWGG	4 cut(s)	526, 1576, 3281, 4318
SwaI	ATTTAAAT	1 cut(s)	1599
TaiI	ACGT	2 cut(s)	3834, 4095
TatI	WGTACW	7 cut(s)	602, 740, 893, 1471, 2009, 2138, 3966
TauI	GCSGC	4 cut(s)	254, 597, 4166, 4206
TscAI	CASTG	7 cut(s)	1888, 2211, 2881, 4078, 4154, 4202, 4411
TseFI	GTSAC	4 cut(s)	884, 2486, 2980, 3475
Tsp45I	GTSAC	4 cut(s)	884, 2486, 2980, 3475
TspGWI	ACGGA	2 cut(s)	303, 2821
TspRI	CASTG	7 cut(s)	1888, 2211, 2881, 4078, 4154, 4202, 4411
Vha464I	CTTAAG	1 cut(s)	2990
VpaK11BI	GGWCC	3 cut(s)	1141, 2250, 2455
XagI	CCTNNNNNAGG	2 cut(s)	1616, 1803
XapI	RAATTY	7 cut(s)	112, 921, 1318, 1724, 3302, 3336, 4395
XceI	RCATGY	5 cut(s)	616, 1700, 2351, 2772, 3122
XcmI	CCANNNNNNNNNTGG	2 cut(s)	569, 1648
XhoI	CTCGAG	1 cut(s)	3342
XmaJI	CCTAGG	1 cut(s)	1576
XmiI	GTMKAC	4 cut(s)	441, 2088, 3230, 4314
XmnI	GAANNNNTTC	2 cut(s)	115, 1516
XspI	CTAG	6 cut(s)	272, 1577, 1613, 1956, 2154, 4208
ZrmI	AGTACT	1 cut(s)	3968

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.