Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003184

Physical Location & Seq

Genomic Coordinates Reverse (-)

47717904 .. 47726545

Gene Structure 8642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG348600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3720 bp

ATGTGTGTTTCCCTCTTTTCGGCTCTTGTCAATGCTGAAAAGAAGGCCGATCGAGTGGAGGCCCCTCCCGGGTTCTCCAAGCTGACTGTGTCTGAAGCTGAGAAGGCTGTTGCAGGAAACCTCTGTCGCTGTACTGGGTATCGTTCCATCGCTGATGCCTGCAAGAGCTTTTCTGCTGATGTTGACATGGAGGATTTGGGGTTCAACTCCTTCTGGAGGAAGGGAGACAGTAAGCAAGCGAAGATAGATAGTTTGCCTCCTTATAATCCTGAGAGTGAGGTTTGTACATTCCCTGAGTTTTTGAAAAATGAAATCAGGTCCTTGCCGTCGTTTTTGGATTCCAAGAGATATGGTTGGTACAGTCCAGCTACTATTGAGGAGCTGAAGAGCTTGGTGGAAGCAAATGATTCTGGTGATAGTATGAAGTTGGTTGTTGGTAACACAGGGACGGGGTATTACAAGGAGTTAACAGGTTATGACAAATACATTGATCTCAGATATGTTCCTGAACTATCAATAATTAGGATGGATCCGACGGGTCTTGATGTAGGAGCAATTGTAACCATCACTAAAGTTATTGAAGCTTTAAAGAAGAAAACCAAAGGTGAACTTATCTCAAGAGGTGAGCTAGTGTTTGAAAGAATTGCCAGGCATATGGATAAAATTGCTTCAGGGTTTCTCAGAAATACAGCTAGTATAGGAGGGAATTTGGTGATGGCACAAAGAAAGAACTTTCCTTCAGATATTGCTACAATACTTCTCGCTGTGGATTCAACAGTGAATATCATGAGTGGTTCTAGATCTGAAATTATTATGTTGGAGGATTTTCTGAAAAGAGCCCCATTGGATCCCAAAAGTGTACTTTTAAGTGTTAAAATCCCAAATTGGGAAGCAGTTACAAAAGCTTCTGCAGGATCCAATACTACGTTGCTATTTGAAACGTATAGAGCTGCACCCAGACCGCTAGGAAATGCATTACCTTATTTGAATGCTGCTTTCTTGGCTGAAGTTTCTTCATGTAAAACTTCTACTGGATTTATGGTACATCACTGCTGTCTGGCTTTTGGTGCTTATGGGACTAAACATGCAATTAGAGCAAGAAAGGTTGAGGACTTTTTAAACGGAAAAACCTTGAGTGCTGGTGTTTTGTATGAAGCGATTAAGTTAGTTCGAGCTACTGTGGTTCCTGAAGAAGGCACTACGAGTCCTGCTTACAGGTCAAGCTTGGCTTGTGGTTTTCTTTTTGAGTTCTTTAGCCCCTTTATTAACAGTGACACCGAAATTGCTGATGGTTTCTTGGAGAATATATTGTTCCCTACTTCTAAGATGAATAAGAACCAATGTTGCAATGATGAGATTCCATATGTTTCATCATCAGCTAAACAAGTGCTTAATTTAAGTGCAGACTATGATCCAGTCGGCAAGCCAATTATAAAATCTGGAGCTGCTATCCAAGCTTCAGGTGAGGCTGTGTATGTAGATGACATTCCGTCACCGACAAATTGCTTGCATGGAGCGTTCATTTATAGCACAAAGCCTTTCGTACGGGTTAAGGGAATAAAATTCAAAACTAAACCACAGCCAGATGGAGTTTCTGCTGTCTTATCTTTTAAAGATATCCCCAATGGTGGGGAGAATGTGGGATCTAAGACTATTTTTGGTACCGAACCTCTTTTTGCTGATGATCTTACTCAATGTGCTGGTCAGCGTCTTGCCTTTTTGGTTGCAGATACACAGAAAAATGCAGATTTGGCTGCAAATTTTGTGGATGTTGATTATGAAATGGAAACTATAGAGCAACCTATACTATCCGTAGAGGAGGCTGTTAAGAGGTCTAGTTTTTATGAGGTCCCTCCCTTCTTATCCCCGAAGCAAGTTGGTGACATATCAAAAGGAATGGCTTTAGCTGATCACAAGATTACATCTGCTGAGATCAAACTTGGTTCACAATACTATTTCTACATGGAGACACAAACTACCCTTGCTGTACCAGATGAAGACAACTGCATAGTGGTTTATACTTCAAGTCAGTGTCCCCAGTTTCTACACTCAGTCATCGCAAAGTGTCTTGGCATTCCTGAAAGTAATGTCCGTGTAATTACAAGGAGGGTTGGTGGGGGTTTTGGTGGAAAGGCCGTAAAATCCATTCCTGTCGCAACTGCATGTGCACTAGCGGCACACAAATTACACCGCCCTGTCAGGATATATGTCAATCGCAAGACTGATATGATAATGGCAGGAGGAAGGCATCCCATGAAGATAATTTACAGTGTGGGATTCAAGTCTGATGGGAAGATTACAGCTTTACAACTTGATATATTAATCGATGCAGGGATGGCCCCAGATATAAGTCCAATTATGCCACACAATGTTCTGGGTGCACTTAAGAAGTATGATTGGGGTGCTCTGTCTTTTGATGTAAAGGTATGCAAAACTAACAATCCAAGTAGGTCTGCTATGCGGGGTCCTGGGGAGGTGCAGGGTTCATTTATTGCTGAAGCTGTAATTGAACATGTAGCATCTACCCTTTCCATGGAAGTGGATTGTGTGAGAAATATAAATCTTCACACACATTGCAGCCTTGATTTATTTTATGAGAATCATGCTGGTGAACCTCTTGAGTATACTTTACCTTCAATTTGGGACAAGCTGGCCATGTCTTCAAGCTTTAACCAAAGGACTGAAATGGTAAAAGAATTTAATAAATGCAATAAATGGCGGAAAAGAGGAATTTCTCGAGTACCTATAGTATATGAAGTTTCATTGAGACCAACTCCAGGGAAAGTGAGCATTCTAAGCGATGGTTCTGTTGTTGTTGAAGTTGGAGGGATTGAACTGGGTCAGGGTCTCTGGACAAAAGTAAAACAGATGGCTGCTTTCGCTCTTGGTTCCATTCAATGTGATGATAGTGGAGATCTTTTGGATAAAGTACGGGTGGTACAATCTGATACAGTGAGCTTAATTCAAGGAGGATTTACTGCTGGAAGCACTACATCTGAGTCAAGTTGCCAGGCAGTTAGGTTATCCTGTGATATTTTGGTTGAGAGGCTAGCTCCTCTCAAGCAAATATTGCAGGAGCAAATGGGTTCTATTAAATGGGAGACGCTTATTGAAAAGGCATACTTGCAAGCTTTGAACTTATCAGCAAGTTCTTTCTATGTTCCTGATTTTACTTCTGTGCAATACCTTAACTATGGTGCTGCAGTGAGTGAGGTTGAGGTAGATCTTCTGACTGGAGAAACTAGAATATTGCAATCAGATATTATCTACGATTGTGGTCAGAGTCTCAACCCTGCTGTGGATTTAGGACAGATCGAAGGTGCTTTTGTTCAAGGAATTGGGTTTTTCATGCTTGAAGAATACATGGAAAATTCTGAGGGATTGGTGATTTCTAATGGTACATGGACATATAAAATTCCTTCCATAGACACTATACCCAAGCAGTTCAATGTCGAAATACTAAATAGTGGACAACACAGTAATCGTGTTCTCTCTTCAAAAGCTTCTGGTGAGCCTCCATTACTTCTAGCAGTTTCAGTTCACTGCGCTGCAAGAGCTGCTATCAAAGAATCCAGAAAACAGCTTCTTCAATGGGGAGGCCTGAATGGGTCTGCTTCAATGTTCCAGATGGCCGTTCCAGCTACCATGCCTGTTGTGAAGGAGTTATGTGGGCTGGAAAGTGTGGAGTGCTACTTGGAATGGATTGCAGGCAGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004029 GO:0004031 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009687 GO:0009688 GO:0009850 GO:0009851 GO:0009987 GO:0010293 GO:0010817 GO:0016053 GO:0016106 GO:0016114 GO:0016143 GO:0016491 GO:0016620 GO:0016623 GO:0016903 GO:0018479 GO:0018488 GO:0019748 GO:0019752 GO:0019757 GO:0019760 GO:0019899 GO:0031625 GO:0032787 GO:0036094 GO:0042445 GO:0042446 GO:0043167 GO:0043168 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046394 GO:0048037 GO:0050302 GO:0050660 GO:0050662 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0097159 GO:1901135 GO:1901265 GO:1901363 GO:1901564 GO:1901576 GO:1901615 GO:1901617 GO:1901657 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00380 ko00906 ko01100 ko01110 map00380 map00906 map01100 map01110

Pfam Domains

Protein Families

Ald_Xan_dh_C Ald_Xan_dh_C2 CO_deh_flav_C FAD_binding_5 Fer2 Fer2_2

Protein Analysis

1239

Amino Acids

135.14

Weight (kDa)

5.94

Isoelectric Point (pI)

38.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer2_2	PF01799	27 - 55	3.4e-06	[2Fe-2S] binding domain
FAD_binding_5	PF00941	116 - 296	3.9e-39	FAD binding domain in molybdopterin dehydrogenase
CO_deh_flav_C	PF03450	314 - 419	2.4e-19	CO dehydrogenase flavoprotein C-terminal domain
Ald_Xan_dh_C	PF01315	487 - 595	3.4e-28	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
MoCoBD_1	PF02738	625 - 855	9.5e-81	Molybdopterin cofactor-binding domain
MoCoBD_2	PF20256	884 - 1146	1.2e-74	Molybdopterin cofactor-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04580 AT2G27150 AT2G27150 AT2G27150 AT2G27150 AT2G27150 AT2G27150 AT3G43600
fragaria_vesca	FvH4_3g26980 FvH4_3g26980 FvH4_3g26980 FvH4_3g26980 FvH4_3g26980 FvH4_3g26980
malus_domestica	MD00G1162900.v1.1 MD03G1162200.v1.1 MD11G1178400.v1.1 MD11G1178500.v1.1
prunus_persica	Prupe.6G150900_v2.0.a1 Prupe.6G150900_v2.0.a1 Prupe.6G150900_v2.0.a1 Prupe.6G150900_v2.0.a1 Prupe.6G150900_v2.0.a1
pyrus_communis	pycom03g11520 pycom11g15240 pycom11g15280 pycom11g15360
rosa_chinensis	RchiOBHm_Chr5g0049511
rosa_laevigata	RLG00000034622
rosa_multiflora	Rmu_sc0001307.1_g000031
rosa_roxburghii	Rroxscaffold_1G00032200
rosa_rugosa	Rorug05G0248700
rosa_samantha	Rh5AG325300 Rh5BG336500 Rh5CG361200 Rh5DG348600
rosa_wichuraiana	Rw5G030710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	264, 1433
Acc65I	GGTACC	1 cut(s)	1661
AccB1I	GGYRCC	1 cut(s)	1661
AccI	GTMKAC	1 cut(s)	2624
AciI	CCGC	5 cut(s)	962, 2174, 2191, 2461, 2719
AclWI	GGATC	8 cut(s)	524, 537, 842, 855, 909, 922, 1406, 1651
AcoI	YGGCCR	2 cut(s)	2652, 3630
AcsI	RAATTY	7 cut(s)	706, 1562, 1759, 2696, 2730, 3370, 3414
AcuI	CTGAAG	8 cut(s)	114, 404, 654, 723, 1026, 1209, 1443, 2517
AflII	CTTAAG	1 cut(s)	2384
AflIII	ACRYGT	1 cut(s)	2512
AhdI	GACNNNNNGTC	1 cut(s)	1489
AjnI	CCWGG	4 cut(s)	647, 2467, 2776, 3009
AloI	GAACNNNNNNTCC	2 cut(s)	185, 217
Alw21I	GWGCWC	3 cut(s)	2170, 2383, 2407
Alw26I	GTCTC	6 cut(s)	219, 1961, 2761, 2852, 3095, 3290
Alw44I	GTGCAC	2 cut(s)	2166, 2379
AlwI	GGATC	8 cut(s)	524, 537, 842, 855, 909, 922, 1406, 1651
Ama87I	CYCGRG	2 cut(s)	68, 2736
AoxI	GGCC	7 cut(s)	45, 60, 2133, 2337, 2652, 3598, 3630
ApaLI	GTGCAC	2 cut(s)	2166, 2379
ApeKI	GCWGC	9 cut(s)	950, 992, 1445, 1754, 2577, 2873, 3200, 3548, 3557
ApoI	RAATTY	7 cut(s)	706, 1562, 1759, 2696, 2730, 3370, 3414
AseI	ATTAAT	1 cut(s)	2321
Asp718I	GGTACC	1 cut(s)	1661
AspLEI	GCGC	1 cut(s)	3548
AspS9I	GGNCC	5 cut(s)	61, 318, 1849, 2338, 2465
AsuC2I	CCSGG	2 cut(s)	69, 70
AsuNHI	GCTAGC	1 cut(s)	3049
AvaI	CYCGRG	2 cut(s)	68, 2736
AvaII	GGWCC	3 cut(s)	318, 1849, 2465
BaeGI	GKGCMC	2 cut(s)	2170, 2383
BalI	TGGCCA	1 cut(s)	2654
BamHI	GGATCC	3 cut(s)	529, 847, 914
BanI	GGYRCC	1 cut(s)	1661
BanII	GRGCYC	1 cut(s)	841
BarI	GAAGNNNNNNTAC	2 cut(s)	2249, 2281
BbsI	GAAGAC	2 cut(s)	2004, 2652
Bbv12I	GWGCWC	3 cut(s)	2170, 2383, 2407
BbvI	GCAGC	9 cut(s)	937, 979, 1432, 1741, 2589, 2860, 3187, 3535, 3544
BceAI	ACGGC	3 cut(s)	310, 2120, 3617
BciT130I	CCWGG	4 cut(s)	649, 2469, 2778, 3011
BclI	TGATCA	1 cut(s)	1909
BcnI	CCSGG	2 cut(s)	69, 70
BcoDI	GTCTC	6 cut(s)	219, 1961, 2761, 2852, 3095, 3290
BfaI	CTAG	9 cut(s)	629, 693, 798, 965, 1836, 2171, 3050, 3243, 3527
BfmI	CTRYAG	4 cut(s)	909, 1791, 2745, 3201
BfrI	CTTAAG	1 cut(s)	2384
BglII	AGATCT	3 cut(s)	800, 2914, 3223
Bme1390I	CCNGG	6 cut(s)	69, 70, 649, 2469, 2778, 3011
Bme18I	GGWCC	3 cut(s)	318, 1849, 2465
BmeRI	GACNNNNNGTC	1 cut(s)	1489
BmeT110I	CYCGRG	2 cut(s)	68, 2736
BmgT120I	GGNCC	5 cut(s)	61, 318, 1849, 2338, 2465
BmrFI	CCNGG	6 cut(s)	69, 70, 649, 2469, 2778, 3011
BmrI	ACTGGG	3 cut(s)	144, 2032, 2846
BmsI	GCATC	4 cut(s)	145, 2257, 2317, 2528
BmtI	GCTAGC	1 cut(s)	3053
BmuI	ACTGGG	3 cut(s)	144, 2032, 2846
BpiI	GAAGAC	2 cut(s)	2004, 2652
BplI	GAGNNNNNCTC	4 cut(s)	2758, 2790, 3037, 3069
BpmI	CTGGAG	4 cut(s)	235, 1461, 2760, 3255
BpuEI	CTTGAG	4 cut(s)	601, 1153, 2639, 3044
BpuMI	CCSGG	2 cut(s)	69, 70
Bsa29I	ATCGAT	1 cut(s)	2325
BsaI	GGTCTC	2 cut(s)	2761, 2852
BsaJI	CCNNGG	4 cut(s)	68, 2468, 2532, 2777
BsaXI	ACNNNNNCTCC	4 cut(s)	543, 573, 2098, 2128
Bse1I	ACTGG	6 cut(s)	139, 1036, 1415, 2038, 2841, 3238
Bse3DI	GCAATG	2 cut(s)	1354, 2572
BseBI	CCWGG	4 cut(s)	649, 2469, 2778, 3011
BseCI	ATCGAT	1 cut(s)	2325
BseDI	CCNNGG	4 cut(s)	68, 2468, 2532, 2777
BseGI	GGATG	4 cut(s)	531, 1774, 2248, 2340
BseMI	GCAATG	2 cut(s)	1354, 2572
BseMII	CTCAG	9 cut(s)	90, 261, 285, 508, 694, 1920, 2064, 2988, 3366
BseNI	ACTGG	6 cut(s)	139, 1036, 1415, 2038, 2841, 3238
BseRI	GAGGAG	3 cut(s)	392, 1832, 3045
BseSI	GKGCMC	2 cut(s)	2170, 2383
BseXI	GCAGC	9 cut(s)	937, 979, 1432, 1741, 2589, 2860, 3187, 3535, 3544
BsgI	GTGCAG	3 cut(s)	936, 1422, 2498
Bsh1285I	CGRYCG	1 cut(s)	52
BshFI	GGCC	7 cut(s)	47, 62, 2135, 2339, 2654, 3600, 3632
BshNI	GGYRCC	1 cut(s)	1661
BshVI	ATCGAT	1 cut(s)	2325
BsiEI	CGRYCG	1 cut(s)	52
BsiHKAI	GWGCWC	3 cut(s)	2170, 2383, 2407
BsiHKCI	CYCGRG	2 cut(s)	68, 2736
BsiSI	CCGG	1 cut(s)	69
BsiWI	CGTACG	1 cut(s)	1543
BslFI	GGGAC	5 cut(s)	460, 1090, 1835, 2019, 2657
BsmAI	GTCTC	6 cut(s)	219, 1961, 2761, 2852, 3095, 3290
BsmBI	CGTCTC	1 cut(s)	3095
BsmFI	GGGAC	5 cut(s)	460, 1090, 1835, 2019, 2657
BsmI	GAATGC	3 cut(s)	994, 2073, 2790
BsnI	GGCC	7 cut(s)	47, 62, 2135, 2339, 2654, 3600, 3632
Bso31I	GGTCTC	2 cut(s)	2761, 2852
BsoBI	CYCGRG	2 cut(s)	68, 2736
Bsp1286I	GDGCHC	4 cut(s)	841, 2170, 2383, 2407
Bsp1407I	TGTACA	1 cut(s)	284
Bsp19I	CCATGG	1 cut(s)	2532
BspACI	CCGC	5 cut(s)	962, 2174, 2191, 2461, 2719
BspANI	GGCC	7 cut(s)	47, 62, 2135, 2339, 2654, 3600, 3632
BspCNI	CTCAG	9 cut(s)	91, 262, 286, 507, 693, 1921, 2063, 2989, 3367
BspDI	ATCGAT	1 cut(s)	2325
BspHI	TCATGA	1 cut(s)	786
BspMAI	CTGCAG	2 cut(s)	913, 3205
BspOI	GCTAGC	1 cut(s)	3053
BspPI	GGATC	8 cut(s)	524, 537, 842, 855, 909, 922, 1406, 1651
BspQI	GCTCTTC	1 cut(s)	380
BspT107I	GGYRCC	1 cut(s)	1661
BspTI	CTTAAG	1 cut(s)	2384
BspTNI	GGTCTC	2 cut(s)	2761, 2852
BsrDI	GCAATG	2 cut(s)	1354, 2572
BsrGI	TGTACA	1 cut(s)	284
BsrI	ACTGG	6 cut(s)	139, 1036, 1415, 2038, 2841, 3238
BssECI	CCNNGG	4 cut(s)	68, 2468, 2532, 2777
BssNAI	GTATAC	1 cut(s)	2625
BssT1I	CCWWGG	1 cut(s)	2532
Bst1107I	GTATAC	1 cut(s)	2625
Bst2UI	CCWGG	4 cut(s)	649, 2469, 2778, 3011
Bst4CI	ACNGT	9 cut(s)	88, 230, 362, 778, 1180, 1271, 2270, 2953, 3479
Bst6I	CTCTTC	2 cut(s)	380, 3499
BstAFI	CTTAAG	1 cut(s)	2384
BstAPI	GCANNNNNTGC	2 cut(s)	3070, 3557
BstAUI	TGTACA	1 cut(s)	284
BstC8I	GCNNGC	8 cut(s)	160, 237, 1424, 1508, 2652, 3051, 3129, 3709
BstDSI	CCRYGG	1 cut(s)	2532
BstENI	CCTNNNNNAGG	2 cut(s)	214, 1191
BstF5I	GGATG	4 cut(s)	531, 1774, 2248, 2340
BstHHI	GCGC	1 cut(s)	3548
BstMAI	GTCTC	6 cut(s)	219, 1961, 2761, 2852, 3095, 3290
BstMCI	CGRYCG	1 cut(s)	52
BstNI	CCWGG	4 cut(s)	649, 2469, 2778, 3011
BstNSI	RCATGY	3 cut(s)	1088, 2166, 2516
BstSCI	CCNGG	6 cut(s)	67, 68, 647, 2467, 2776, 3009
BstSFI	CTRYAG	4 cut(s)	909, 1791, 2745, 3201
BstSLI	GKGCMC	2 cut(s)	2170, 2383
BstV1I	GCAGC	9 cut(s)	937, 979, 1432, 1741, 2589, 2860, 3187, 3535, 3544
BstV2I	GAAGAC	2 cut(s)	2004, 2652
BstX2I	RGATCY	7 cut(s)	529, 800, 847, 914, 1643, 2914, 3223
BstXI	CCANNNNNNTGG	2 cut(s)	655, 2539
BstYI	RGATCY	7 cut(s)	529, 800, 847, 914, 1643, 2914, 3223
BstZ17I	GTATAC	1 cut(s)	2625
Bsu15I	ATCGAT	1 cut(s)	2325
BsuRI	GGCC	7 cut(s)	47, 62, 2135, 2339, 2654, 3600, 3632
BsuTUI	ATCGAT	1 cut(s)	2325
BtgI	CCRYGG	1 cut(s)	2532
BtgZI	GCGATG	3 cut(s)	133, 2041, 2814
BtsCI	GGATG	4 cut(s)	531, 1774, 2248, 2340
BtsI	GCAGTG	3 cut(s)	1048, 3210, 3541
BtsIMutI	CAGTG	8 cut(s)	783, 1048, 1276, 2036, 2275, 2958, 3210, 3541
Cac8I	GCNNGC	8 cut(s)	160, 237, 1424, 1508, 2652, 3051, 3129, 3709
CciI	TCATGA	1 cut(s)	786
CfoI	GCGC	1 cut(s)	3548
Cfr13I	GGNCC	5 cut(s)	61, 318, 1849, 2338, 2465
Cfr9I	CCCGGG	1 cut(s)	68
ClaI	ATCGAT	1 cut(s)	2325
CseI	GACGC	2 cut(s)	1697, 3112
CspCI	CAANNNNNGTGG	2 cut(s)	1746, 1781
DraI	TTTAAA	3 cut(s)	588, 1119, 1612
DriI	GACNNNNNGTC	1 cut(s)	1489
EaeI	YGGCCR	2 cut(s)	2652, 3630
Eam1104I	CTCTTC	2 cut(s)	380, 3499
Eam1105I	GACNNNNNGTC	1 cut(s)	1489
EarI	CTCTTC	2 cut(s)	380, 3499
EciI	GGCGGA	1 cut(s)	2734
Eco130I	CCWWGG	1 cut(s)	2532
Eco147I	AGGCCT	1 cut(s)	3600
Eco24I	GRGCYC	1 cut(s)	841
Eco31I	GGTCTC	2 cut(s)	2761, 2852
Eco32I	GATATC	1 cut(s)	1618
Eco47I	GGWCC	3 cut(s)	318, 1849, 2465
Eco57I	CTGAAG	8 cut(s)	114, 404, 654, 723, 1026, 1209, 1443, 2517
Eco88I	CYCGRG	2 cut(s)	68, 2736
EcoNI	CCTNNNNNAGG	2 cut(s)	214, 1191
EcoO109I	RGGNCCY	4 cut(s)	61, 318, 1849, 2465
EcoRII	CCWGG	4 cut(s)	647, 2467, 2776, 3009
EcoRV	GATATC	1 cut(s)	1618
EcoT14I	CCWWGG	1 cut(s)	2532
EcoT22I	ATGCAT	1 cut(s)	976
EcoT38I	GRGCYC	1 cut(s)	841
ErhI	CCWWGG	1 cut(s)	2532
Esp3I	CGTCTC	1 cut(s)	3095
FalI	AAGNNNNNCTT	6 cut(s)	594, 626, 1213, 1245, 3107, 3139
FaqI	GGGAC	5 cut(s)	460, 1090, 1835, 2019, 2657
FauI	CCCGC	1 cut(s)	2454
FauNDI	CATATG	2 cut(s)	654, 1363
FbaI	TGATCA	1 cut(s)	1909
FblI	GTMKAC	1 cut(s)	2624
FokI	GGATG	4 cut(s)	538, 1781, 2235, 2347
FriOI	GRGCYC	1 cut(s)	841
FspBI	CTAG	9 cut(s)	629, 693, 798, 965, 1836, 2171, 3050, 3243, 3527
GlaI	GCGC	1 cut(s)	3547
GsuI	CTGGAG	4 cut(s)	235, 1461, 2760, 3255
HaeIII	GGCC	7 cut(s)	47, 62, 2135, 2339, 2654, 3600, 3632
HapII	CCGG	1 cut(s)	69
HgaI	GACGC	2 cut(s)	1697, 3112
HhaI	GCGC	1 cut(s)	3548
Hin6I	GCGC	1 cut(s)	3546
HinP1I	GCGC	1 cut(s)	3546
HincII	GTYRAC	2 cut(s)	184, 468
HindII	GTYRAC	2 cut(s)	184, 468
HindIII	AAGCTT	7 cut(s)	582, 903, 1222, 1455, 2665, 3129, 3501
HpaI	GTTAAC	1 cut(s)	468
HpaII	CCGG	1 cut(s)	69
Hpy99I	CGWCG	2 cut(s)	331, 538
HpyCH4III	ACNGT	9 cut(s)	88, 230, 362, 778, 1180, 1271, 2270, 2953, 3479
HpyCH4IV	ACGT	2 cut(s)	926, 941
HpySE526I	ACGT	2 cut(s)	926, 941
HspAI	GCGC	1 cut(s)	3546
KpnI	GGTACC	1 cut(s)	1665
Ksp22I	TGATCA	1 cut(s)	1909
KspAI	GTTAAC	1 cut(s)	468
LguI	GCTCTTC	1 cut(s)	380
LmnI	GCTCC	6 cut(s)	379, 551, 1442, 1514, 3058, 3076
Lsp1109I	GCAGC	9 cut(s)	937, 979, 1432, 1741, 2589, 2860, 3187, 3535, 3544
LweI	GCATC	4 cut(s)	145, 2257, 2317, 2528
MaeI	CTAG	9 cut(s)	629, 693, 798, 965, 1836, 2171, 3050, 3243, 3527
MaeII	ACGT	2 cut(s)	926, 941
MaeIII	GTNAC	6 cut(s)	437, 559, 895, 1271, 1491, 1880
MfeI	CAATTG	1 cut(s)	555
MflI	RGATCY	7 cut(s)	529, 800, 847, 914, 1643, 2914, 3223
MhlI	GDGCHC	4 cut(s)	841, 2170, 2383, 2407
MlsI	TGGCCA	1 cut(s)	2654
MluNI	TGGCCA	1 cut(s)	2654
MlyI	GAGTC	3 cut(s)	1213, 3008, 3292
MmeI	TCCRAC	3 cut(s)	557, 798, 2803
Mox20I	TGGCCA	1 cut(s)	2654
Mph1103I	ATGCAT	1 cut(s)	976
MscI	TGGCCA	1 cut(s)	2654
MslI	CAYNNNNRTG	2 cut(s)	2537, 2607
Msp20I	TGGCCA	1 cut(s)	2654
MspCI	CTTAAG	1 cut(s)	2384
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	6 cut(s)	69, 70, 649, 2469, 2778, 3011
MunI	CAATTG	1 cut(s)	555
Mva1269I	GAATGC	3 cut(s)	994, 2073, 2790
MvaI	CCWGG	4 cut(s)	649, 2469, 2778, 3011
NciI	CCSGG	2 cut(s)	69, 70
NcoI	CCATGG	1 cut(s)	2532
NdeI	CATATG	2 cut(s)	654, 1363
NheI	GCTAGC	1 cut(s)	3049
NmuCI	GTSAC	3 cut(s)	1271, 1491, 1880
NsiI	ATGCAT	1 cut(s)	976
NspI	RCATGY	3 cut(s)	1088, 2166, 2516
PaeR7I	CTCGAG	1 cut(s)	2736
PagI	TCATGA	1 cut(s)	786
PceI	AGGCCT	1 cut(s)	3600
PciI	ACATGT	1 cut(s)	2512
PciSI	GCTCTTC	1 cut(s)	380
PctI	GAATGC	3 cut(s)	994, 2073, 2790
PfeI	GAWTC	7 cut(s)	338, 407, 770, 1357, 2277, 2599, 3569
Pfl23II	CGTACG	1 cut(s)	1543
PflFI	GACNNNGTC	1 cut(s)	88
Ple19I	CGATCG	1 cut(s)	52
PleI	GAGTC	3 cut(s)	1212, 3007, 3291
PpsI	GAGTC	3 cut(s)	1212, 3007, 3291
PpuMI	RGGWCCY	3 cut(s)	318, 1849, 2465
PscI	ACATGT	1 cut(s)	2512
PshBI	ATTAAT	1 cut(s)	2321
PsiI	TTATAA	2 cut(s)	264, 1433
Psp5II	RGGWCCY	3 cut(s)	318, 1849, 2465
Psp6I	CCWGG	4 cut(s)	647, 2467, 2776, 3009
PspGI	CCWGG	4 cut(s)	647, 2467, 2776, 3009
PspLI	CGTACG	1 cut(s)	1543
PspPI	GGNCC	5 cut(s)	61, 318, 1849, 2338, 2465
PspPPI	RGGWCCY	3 cut(s)	318, 1849, 2465
PstI	CTGCAG	2 cut(s)	913, 3205
PsuI	RGATCY	7 cut(s)	529, 800, 847, 914, 1643, 2914, 3223
PsyI	GACNNNGTC	1 cut(s)	88
PvuI	CGATCG	1 cut(s)	52
RseI	CAYNNNNRTG	2 cut(s)	2537, 2607
SapI	GCTCTTC	1 cut(s)	380
Sau96I	GGNCC	5 cut(s)	61, 318, 1849, 2338, 2465
SchI	GAGTC	3 cut(s)	1213, 3008, 3292
ScrFI	CCNGG	6 cut(s)	69, 70, 649, 2469, 2778, 3011
SduI	GDGCHC	4 cut(s)	841, 2170, 2383, 2407
SfaNI	GCATC	4 cut(s)	145, 2257, 2317, 2528
SfcI	CTRYAG	4 cut(s)	909, 1791, 2745, 3201
Sfr274I	CTCGAG	1 cut(s)	2736
SinI	GGWCC	3 cut(s)	318, 1849, 2465
SlaI	CTCGAG	1 cut(s)	2736
SmaI	CCCGGG	1 cut(s)	70
SmiMI	CAYNNNNRTG	2 cut(s)	2537, 2607
SmlI	CTYRAG	6 cut(s)	616, 1132, 2384, 2618, 2736, 3059
SmoI	CTYRAG	6 cut(s)	616, 1132, 2384, 2618, 2736, 3059
SseBI	AGGCCT	1 cut(s)	3600
SsiI	CCGC	5 cut(s)	962, 2174, 2191, 2461, 2719
SspI	AATATT	2 cut(s)	3069, 3249
SspMI	CTAG	9 cut(s)	629, 693, 798, 965, 1836, 2171, 3050, 3243, 3527
StuI	AGGCCT	1 cut(s)	3600
StyD4I	CCNGG	6 cut(s)	67, 68, 647, 2467, 2776, 3009
StyI	CCWWGG	1 cut(s)	2532
TaaI	ACNGT	9 cut(s)	88, 230, 362, 778, 1180, 1271, 2270, 2953, 3479
TaiI	ACGT	2 cut(s)	929, 944
TaqI	TCGA	6 cut(s)	52, 1171, 2325, 2737, 3315, 3453
TatI	WGTACW	3 cut(s)	131, 284, 859
TauI	GCSGC	1 cut(s)	2177
TfiI	GAWTC	7 cut(s)	338, 407, 770, 1357, 2277, 2599, 3569
TscAI	CASTG	8 cut(s)	783, 1055, 1276, 2036, 2275, 2958, 3210, 3548
TseFI	GTSAC	3 cut(s)	1271, 1491, 1880
TseI	GCWGC	9 cut(s)	950, 992, 1445, 1754, 2577, 2873, 3200, 3548, 3557
Tsp45I	GTSAC	3 cut(s)	1271, 1491, 1880
TspGWI	ACGGA	4 cut(s)	1137, 1479, 1801, 2081
TspMI	CCCGGG	1 cut(s)	68
TspRI	CASTG	8 cut(s)	783, 1055, 1276, 2036, 2275, 2958, 3210, 3548
Tth111I	GACNNNGTC	1 cut(s)	88
Vha464I	CTTAAG	1 cut(s)	2384
VneI	GTGCAC	2 cut(s)	2166, 2379
VpaK11BI	GGWCC	3 cut(s)	318, 1849, 2465
VspI	ATTAAT	1 cut(s)	2321
XagI	CCTNNNNNAGG	2 cut(s)	214, 1191
XapI	RAATTY	7 cut(s)	706, 1562, 1759, 2696, 2730, 3370, 3414
XbaI	TCTAGA	1 cut(s)	797
XceI	RCATGY	3 cut(s)	1088, 2166, 2516
XhoI	CTCGAG	1 cut(s)	2736
XmaI	CCCGGG	1 cut(s)	68
XmiI	GTMKAC	1 cut(s)	2624
XspI	CTAG	9 cut(s)	629, 693, 798, 965, 1836, 2171, 3050, 3243, 3527
Zsp2I	ATGCAT	1 cut(s)	976

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.