Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003184

Physical Location & Seq

Genomic Coordinates Reverse (-)

20085956 .. 20094569

Gene Structure 8614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g26980.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4068 bp

ATGGCCGCCACCAGCTTCGTCTTCGCCGTTAACCGCCGCCGCTTTGAGCTCCCCACCGTCGATCCTTCCACCACTCTGCTCGAGTTTCTCCGGTCCCACACTCCCTTCAAGAGCGTCAAGCTCGGCTGCGGCGAAGGCGGTTGTGGCGCTTGCGTTGTGCTACTCTCAAAGTATGACCCTGTTCTCAACAAAGTGGAGGATTTCAGTGTGAATTCATGTCTCACATTACTCTGCAGCGTCAACCGCTGCTCCATCACGACCTCCGAAGGCCTTGGGAACACCAGAGACGGCTTCCATTCCATTCACCAGCGCTTCAGCGGCTTCCACGCTTCTCAGTGCGGCTTCTGTACTCCCGGCATGTGCGTTTCGCTCTTTTCGGCTCTTGTCAATGCCCAAAACACCACTGACCGACTTGAGCCCCCTCCCGGCTTCTCCAAGATGACCGTTTCCCAAGCTGAGATGGCTATTGCTGGCAATCTCTGCCGCTGCACCGGATATCGTCCCATTGCCGATGCCTGCAAGAGCTTTTCGGCTGATGTTGACATTGAGGATTTGGGGTTTAACTCCTTTTGGAGCAAGGGAGATAGTAAGGAAGCAATGGTAGATAGTTTGCCTCCTTATAATCCTCACAGTGAGGTCTGTACATTTCCTGAGTTTTTGAAGAATGAGATCAGGTCCTCGTCGTGTTTGGACCCCAAGAGATATGGTTGGTACAGTCCAGCTGGTATTGAGGAGCTTCAGAGGTTAGTGGAAGCCAATGCTTCTGGTGAGAGTGTGAAATTGGTTGTTGGTAATACCGGGACAGGGTATTACAAGGAGTTAGCGTGTTATGACAGATACATTGATCTCAATTTTGTTCCTGAGCTATCGATAATCAGGATGGACCGGACGGGGCTCAATGTAGGAGCAATTGTAACCATTACTAAAGTTATTGAAGCTTTAAAGAAGAAAACCAAAGGTGAGCATATGTCAAGAGGCGAGGTCGTGTTTGAACGAATTGCCAAGCATATGGATAAAATTGCTTCAGGCTTTATCAGAAACACAGCTAGTATAGGAGGGAATTTGGTTATGGCACAAAGAAACTACTTTCCTTCAGATATTGCAACAATACTTCTTGCTGTGGATTCAACAGTGAATATAGTGAGTGGTTCTGGATCTGAAATCATTCTGTTGGAAGAGTTTCTGAAAAGATCCCCATTGGGTCCCAAAAGTGTACTTGTAAGTATTAAAATCCCAAATTGGGAAGCAGTTACAAAAGTTTCTGTAGGACTCGATACTATGTTGCTATTTGAAACCTATAGAGCTGCACCGAGACCACTAGGAAATGCATTGCCTTATTTAAATGCTGCTTTCTTGGCCGAAGTTTCTAAAACTTCTACTGGATTTATGGTACATCACTGCTGTCTGGCTTTTGGTGCTTATGGAACTAAACATGCAATTAGAGCAAGAAAGGTTGAGGACTTTTTAACCGGAAAGACCTTGAGTGCTGGTGTTCTGCATGAAGCTATTAAGTTAGTTCGAGCTATTGTTGTTCCTGAAGAAGGCACTACGAATCCTGCTTACAGGTCAAGCTTGGCTAGTGGTTTTCTTTTTGAGTTCTTTAGCCCCTTTATTAACATTGATACTGAAATTTCTGATGGTTTCGTGGAGAATATTTTGTTCCCTACTTCTGAGATGAATAAGAACCAACATTGCAATGATGACTTTCCACCTGTTCTATCATCAGCTAAACAAGTGGTTAATTTAAGTACAGACTATGATCCGGTCGGCAAGCCAATTATAAAATCTGGAGCGGCCCTCCAAGCGTCAGGTGAGGCTGTGTATGTAGACGACATCCCGTCACCAACAAATTGCTTGCATGGAGCGTTCATTTATAGTACAAAGCCTCTCGTACGGGTTAAGGGAATAAATGTCAGAACTAAACCACAGCCAGATGGAGTTTCTGCTGTCTTATCTTTTAAAGATATCCCCAACGGTGGGGAGAATGTGGGATCTAAGACTATTTTTGGTAGCGAACCTCTTTTTGCTGATGATATTACTCAATGCGCTGGTCAGCGTCTTGCCTTTGTGGTTGCAGATACACAGAAACATGCAGATTTGGCCGCAAACGCTGCGGATGTTGAGTATGAAATGGAAGATATGGAGCCACCAATCCTATCTGTAGAGGAGGCCATTAAGAGGTCTAGTTATTTTGAGGTCCCTTCTTTCTTATACCCGAAGCAAGTTGGTGATATATCAAAAGGAATGGCTATAGCTGATCACAAGATTACATCTGCTCAGATCAAACTTGGTTCACAATATCATTTCTACATGGAGACACAAACTGCTCTTGCTGTACCAGATGAAGACAACTGTCTAGTGGTTTATACTTCAAGTCAGTGTCCTCAGTTTTCACACGCAGTCATCGCAAAGTGTCTTGGCATTCCTGAAAGTAATGTCCGTGTAATTACAAGAAGGGTTGGTGGGGGTTTTGGTGGAAAGGCCGTAAAATCCATTCCTGTTGCGACAGCATGTGCACTTGCAGCACACAAATTACATTGCCCGGTCAGGATATATGTCAATCGCAAGACTGATATGATAATGGCAGGAGGAAGGCATCCCATGAAGATAATCTACAGTGTGGGATTCAAGTCTGATGGGAAGATTACAGCTTTACAACTTGATATATTGATTGATGCAGGGATGTCCGCAGATATAAGTCCAATTATGCCGCGCAATATCCTGGGTTCACTTAAGAAGTATGATTGGGGTGCTCTGTCTTTTGATGTAAAGGTATGCAAAACTAACAATCCAAGTAGGACTGCAATGCGAGGTCCTGGGGAGGTGCAAGGGTCATTTATTGCTGAAGCTGTAATTGAACATGTTGCATCTACCCTATCCATGCAAGTGGATCATGTGAGAAATATAAATCTTCACACACATTGCAGCCTAGATTTATTTTATGAGGACACTGCTGGTGAACCTCTAGAGTATACTTTACCTTCAATATGGGACAAGGTGGCCATGTCTTCAAGCTTTAACCAAAGGACTGAATTCGTAGAAGAATTTAATAAATGCAATACATGGCGAAAAAGAGGAATTTCTCGAGTACCTGTAATACATCAAGTTTCATTGAGACCAACTCCAGGGAAAGTGAGCATTCTAAGCGATGGTTCTGTTGTTGTTGAAGTTGGAGGGATTGAACTAGGTCAGGGTCTGTGGACAAAAGTTAAACAGATGGCTGCTTTCGCTCTTGGTTCCATTCAATGTGATGATAGTGGCGATCTTTTGGATAAAGTACGGGTGGTACAATCTGATACAGTGAGCTTAATTCAAGGAGGATTTACTGCTGGAAGCACCACATCTGAGTCAAGTTGCGAGGCAGTTAGGTTATCATGTGATATTTTGGTTGAGAGGCTAGCTCCCCTCAAGCAACAATTGCAGGATCAAATGGGTTCTATTAAATGGGAGATGCTTATTGAAAAGGCGTACTTGCAAGCCTTGAACTTATCAGCAAGTTCTCTCTATGCCCCGGAAGTTACTTCCATGGAATACCTTAACTATGGTGCTGCAGTAAGTGAGGTTGAGGTAAATCTTCTGAGTGGAGAAACCAGAATATTGCAATCAGATATTATCTACGATTGTGGCCAGAGTCTCAACCCTGCTGTGGATTTAGGACAGATAGAAGGTGCTTTTGTTCAAGGAATTGGGTTTTTCATGCTTGAAGAATACATGGAAAATTCTGATGGATTGGTGGTTTCCGATGGCACATGGACGTATAAAATTCCTTCCATAGACACTATACCGAAGCAGTTTAATGTTGAAGTACTAAATAGTGGACACCACAGCAAACGTGTTCTCTCTTCAAAAGCTTCTGGTGAGCCTCCGTTACTTCTAGCGGTTTCAGTTCACTGTGCTGCAAGAGCTGCCATCAAAGAAGCCAGAAAACAGCTTCTTCAATGGGGAGGCCTGGATGGGTCTGCTTCCATGTTCCAGTTGGCCGTTCCAGCTACCATGCCTGTTGTAAAGGAGTTATGTGGGCCGGAAAGTGTGGAGAGCTACTTGGAATGGTTCGCAGGTAGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004029 GO:0004031 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009687 GO:0009688 GO:0009850 GO:0009851 GO:0009987 GO:0010293 GO:0010817 GO:0016053 GO:0016106 GO:0016114 GO:0016143 GO:0016491 GO:0016620 GO:0016623 GO:0016903 GO:0018479 GO:0018488 GO:0019748 GO:0019752 GO:0019757 GO:0019760 GO:0019899 GO:0031625 GO:0032787 GO:0036094 GO:0042445 GO:0042446 GO:0043167 GO:0043168 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046394 GO:0048037 GO:0050302 GO:0050660 GO:0050662 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0097159 GO:1901135 GO:1901265 GO:1901363 GO:1901564 GO:1901576 GO:1901615 GO:1901617 GO:1901657 GO:1902644 GO:1902645

KEGG Pathways

Metabolic & Signaling

ko00380 ko00906 ko01100 ko01110 map00380 map00906 map01100 map01110

Pfam Domains

Protein Families

Ald_Xan_dh_C Ald_Xan_dh_C2 CO_deh_flav_C FAD_binding_5 Fer2 Fer2_2

Protein Analysis

1356

Amino Acids

147.32

Weight (kDa)

5.82

Isoelectric Point (pI)

39.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer2	PF00111	9 - 76	3.3e-07	2Fe-2S iron-sulfur cluster binding domain
Fer2_2	PF01799	87 - 174	1.9e-21	[2Fe-2S] binding domain
FAD_binding_5	PF00941	234 - 414	6.5e-39	FAD binding domain in molybdopterin dehydrogenase
CO_deh_flav_C	PF03450	432 - 535	3e-19	CO dehydrogenase flavoprotein C-terminal domain
Ald_Xan_dh_C	PF01315	603 - 712	1.3e-29	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
MoCoBD_1	PF02738	740 - 971	3e-82	Molybdopterin cofactor-binding domain
MoCoBD_2	PF20256	1000 - 1262	9.2e-72	Molybdopterin cofactor-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04580 AT2G27150 AT2G27150 AT2G27150 AT2G27150 AT2G27150 AT2G27150 AT3G43600
fragaria_vesca	FvH4_3g26980 FvH4_3g26980 FvH4_3g26980 FvH4_3g26980 FvH4_3g26980 FvH4_3g26980
malus_domestica	MD00G1162900.v1.1 MD03G1162200.v1.1 MD11G1178400.v1.1 MD11G1178500.v1.1
prunus_persica	Prupe.6G150900_v2.0.a1 Prupe.6G150900_v2.0.a1 Prupe.6G150900_v2.0.a1 Prupe.6G150900_v2.0.a1 Prupe.6G150900_v2.0.a1
pyrus_communis	pycom03g11520 pycom11g15240 pycom11g15280 pycom11g15360
rosa_chinensis	RchiOBHm_Chr5g0049511
rosa_laevigata	RLG00000034622
rosa_multiflora	Rmu_sc0001307.1_g000031
rosa_roxburghii	Rroxscaffold_1G00032200
rosa_rugosa	Rorug05G0248700
rosa_samantha	Rh5AG325300 Rh5BG336500 Rh5CG361200 Rh5DG348600
rosa_wichuraiana	Rw5G030710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	621, 1781
Acc36I	ACCTGC	1 cut(s)	4046
AccBSI	CCGCTC	1 cut(s)	1793
AccI	GTMKAC	2 cut(s)	1827, 2972
AccII	CGCG	1 cut(s)	2713
AclWI	GGATC	7 cut(s)	56, 1162, 1185, 1754, 1999, 2898, 3432
AcoI	YGGCCR	6 cut(s)	3, 1356, 2100, 3000, 3625, 3978
AcsI	RAATTY	8 cut(s)	211, 1060, 1629, 3032, 3044, 3078, 3718, 3762
AcuI	CTGAAG	6 cut(s)	298, 722, 1008, 1077, 1557, 2865
AfeI	AGCGCT	1 cut(s)	311
AfiI	CCNNNNNNNGG	9 cut(s)	425, 804, 1240, 1541, 1976, 1977, 2178, 3125, 3646
AflII	CTTAAG	1 cut(s)	2732
AflIII	ACRYGT	2 cut(s)	2860, 3832
AhdI	GACNNNNNGTC	1 cut(s)	1837
AjnI	CCWGG	4 cut(s)	2721, 2815, 3124, 3948
Alw21I	GWGCWC	3 cut(s)	51, 2518, 2755
Alw26I	GTCTC	6 cut(s)	224, 279, 1306, 2309, 3109, 3638
Alw44I	GTGCAC	1 cut(s)	2514
AlwI	GGATC	7 cut(s)	56, 1162, 1185, 1754, 1999, 2898, 3432
AlwNI	CAGNNNCTG	1 cut(s)	3196
Ama87I	CYCGRG	2 cut(s)	80, 3084
Aor51HI	AGCGCT	1 cut(s)	311
ApaLI	GTGCAC	1 cut(s)	2514
ApoI	RAATTY	8 cut(s)	211, 1060, 1629, 3032, 3044, 3078, 3718, 3762
Asp700I	GAANNNNTTC	2 cut(s)	1164, 1179
AspLEI	GCGC	4 cut(s)	149, 312, 2048, 2715
AspS9I	GGNCC	9 cut(s)	93, 675, 691, 883, 1202, 1795, 2197, 2813, 4019
AsuC2I	CCSGG	5 cut(s)	354, 426, 799, 2543, 3512
AsuHPI	GGTGA	8 cut(s)	296, 779, 971, 1823, 1833, 2240, 2969, 3869
AsuNHI	GCTAGC	1 cut(s)	3397
AvaI	CYCGRG	2 cut(s)	80, 3084
AvaII	GGWCC	7 cut(s)	93, 675, 691, 883, 1202, 2197, 2813
BaeGI	GKGCMC	1 cut(s)	2518
BalI	TGGCCA	2 cut(s)	3002, 3627
BanII	GRGCYC	3 cut(s)	51, 420, 897
BarI	GAAGNNNNNNTAC	2 cut(s)	2597, 2629
BbsI	GAAGAC	3 cut(s)	13, 2352, 3000
Bbv12I	GWGCWC	3 cut(s)	51, 2518, 2755
BceAI	ACGGC	4 cut(s)	11, 304, 2468, 3965
BciT130I	CCWGG	4 cut(s)	2723, 2817, 3126, 3950
BclI	TGATCA	1 cut(s)	2257
BcnI	CCSGG	5 cut(s)	354, 426, 799, 2543, 3512
BcoDI	GTCTC	6 cut(s)	224, 279, 1306, 2309, 3109, 3638
BfmI	CTRYAG	7 cut(s)	232, 1263, 1297, 2160, 2250, 2614, 3549
BfoI	RGCGCY	2 cut(s)	150, 313
BfrI	CTTAAG	1 cut(s)	2732
BfuAI	ACCTGC	1 cut(s)	4046
BmcAI	AGTACT	1 cut(s)	3807
Bme1390I	CCNGG	9 cut(s)	354, 426, 799, 2543, 2723, 2817, 3126, 3512, 3950
Bme18I	GGWCC	7 cut(s)	93, 675, 691, 883, 1202, 2197, 2813
BmeRI	GACNNNNNGTC	1 cut(s)	1837
BmeT110I	CYCGRG	2 cut(s)	80, 3084
BmgT120I	GGNCC	9 cut(s)	93, 675, 691, 883, 1202, 1795, 2197, 2813, 4019
BmiI	GGNNCC	7 cut(s)	95, 693, 1203, 1204, 2145, 2199, 3238
BmrFI	CCNGG	9 cut(s)	354, 426, 799, 2543, 2723, 2817, 3126, 3512, 3950
BmsI	GCATC	5 cut(s)	502, 2605, 2665, 2876, 3441
BmtI	GCTAGC	1 cut(s)	3401
BoxI	GACNNNNGTC	1 cut(s)	2352
BpiI	GAAGAC	3 cut(s)	13, 2352, 3000
BplI	GAGNNNNNCTC	6 cut(s)	1782, 1814, 3106, 3138, 3385, 3417
BpmI	CTGGAG	2 cut(s)	1809, 3108
Bpu10I	CCTNAGC	1 cut(s)	861
BpuEI	CTTGAG	3 cut(s)	434, 1501, 3392
BpuMI	CCSGG	5 cut(s)	354, 426, 799, 2543, 3512
Bsa29I	ATCGAT	1 cut(s)	869
BsaI	GGTCTC	2 cut(s)	1306, 3109
BsaJI	CCNNGG	6 cut(s)	271, 2722, 2816, 3125, 3510, 3525
BsaWI	WCCGGW	5 cut(s)	90, 491, 885, 1469, 1762
BsaXI	ACNNNNNCTCC	6 cut(s)	233, 263, 809, 839, 897, 927
Bsc4I	CCNNNNNNNGG	9 cut(s)	425, 804, 1240, 1541, 1976, 1977, 2178, 3125, 3646
Bse1I	ACTGG	2 cut(s)	1384, 3973
Bse3DI	GCAATG	8 cut(s)	504, 603, 1328, 1690, 1702, 2536, 2811, 2920
BseBI	CCWGG	4 cut(s)	2723, 2817, 3126, 3950
BseCI	ATCGAT	1 cut(s)	869
BseDI	CCNNGG	6 cut(s)	271, 2722, 2816, 3125, 3510, 3525
BseGI	GGATG	6 cut(s)	885, 1833, 2122, 2596, 2688, 3958
BseLI	CCNNNNNNNGG	9 cut(s)	425, 804, 1240, 1541, 1976, 1977, 2178, 3125, 3646
BseMI	GCAATG	8 cut(s)	504, 603, 1328, 1690, 1702, 2536, 2811, 2920
BseMII	CTCAG	9 cut(s)	347, 447, 642, 852, 1662, 2291, 2399, 3336, 3569
BseNI	ACTGG	2 cut(s)	1384, 3973
BseRI	GAGGAG	2 cut(s)	746, 2180
BseSI	GKGCMC	1 cut(s)	2518
BsgI	GTGCAG	2 cut(s)	472, 1290
Bsh1236I	CGCG	1 cut(s)	2713
Bsh1285I	CGRYCG	1 cut(s)	1767
BshVI	ATCGAT	1 cut(s)	869
BsiEI	CGRYCG	1 cut(s)	1767
BsiHKAI	GWGCWC	3 cut(s)	51, 2518, 2755
BsiHKCI	CYCGRG	2 cut(s)	80, 3084
BsiWI	CGTACG	1 cut(s)	1891
BslFI	GGGAC	6 cut(s)	79, 486, 814, 1188, 2183, 3005
BslI	CCNNNNNNNGG	9 cut(s)	425, 804, 1240, 1541, 1976, 1977, 2178, 3125, 3646
BsmAI	GTCTC	6 cut(s)	224, 279, 1306, 2309, 3109, 3638
BsmBI	CGTCTC	1 cut(s)	279
BsmFI	GGGAC	6 cut(s)	79, 486, 814, 1188, 2183, 3005
BsmI	GAATGC	2 cut(s)	2421, 3138
Bso31I	GGTCTC	2 cut(s)	1306, 3109
BsoBI	CYCGRG	2 cut(s)	80, 3084
Bsp1286I	GDGCHC	5 cut(s)	51, 420, 897, 2518, 2755
Bsp1407I	TGTACA	1 cut(s)	641
Bsp19I	CCATGG	1 cut(s)	3525
BspCNI	CTCAG	9 cut(s)	346, 448, 643, 853, 1663, 2290, 2398, 3337, 3570
BspDI	ATCGAT	1 cut(s)	869
BspFNI	CGCG	1 cut(s)	2713
BspLI	GGNNCC	7 cut(s)	95, 693, 1203, 1204, 2145, 2199, 3238
BspMAI	CTGCAG	2 cut(s)	236, 3553
BspMI	ACCTGC	1 cut(s)	4046
BspOI	GCTAGC	1 cut(s)	3401
BspPI	GGATC	7 cut(s)	56, 1162, 1185, 1754, 1999, 2898, 3432
BspTI	CTTAAG	1 cut(s)	2732
BspTNI	GGTCTC	2 cut(s)	1306, 3109
BsrBI	CCGCTC	1 cut(s)	1793
BsrDI	GCAATG	8 cut(s)	504, 603, 1328, 1690, 1702, 2536, 2811, 2920
BsrGI	TGTACA	1 cut(s)	641
BsrI	ACTGG	2 cut(s)	1384, 3973
BssECI	CCNNGG	6 cut(s)	271, 2722, 2816, 3125, 3510, 3525
BssNAI	GTATAC	1 cut(s)	2973
BssT1I	CCWWGG	2 cut(s)	271, 3525
Bst1107I	GTATAC	1 cut(s)	2973
Bst2UI	CCWGG	4 cut(s)	2723, 2817, 3126, 3950
Bst6I	CTCTTC	2 cut(s)	1170, 3847
BstAFI	CTTAAG	1 cut(s)	2732
BstAPI	GCANNNNNTGC	4 cut(s)	480, 2111, 3418, 3905
BstAUI	TGTACA	1 cut(s)	641
BstC8I	GCNNGC	7 cut(s)	151, 472, 517, 1772, 1856, 3399, 3477
BstDSI	CCRYGG	1 cut(s)	3525
BstENI	CCTNNNNNAGG	1 cut(s)	1539
BstF5I	GGATG	6 cut(s)	885, 1833, 2122, 2596, 2688, 3958
BstFNI	CGCG	1 cut(s)	2713
BstH2I	RGCGCY	2 cut(s)	150, 313
BstHHI	GCGC	4 cut(s)	149, 312, 2048, 2715
BstMAI	GTCTC	6 cut(s)	224, 279, 1306, 2309, 3109, 3638
BstMCI	CGRYCG	1 cut(s)	1767
BstNI	CCWGG	4 cut(s)	2723, 2817, 3126, 3950
BstNSI	RCATGY	5 cut(s)	361, 1436, 2093, 2514, 2864
BstPAI	GACNNNNGTC	1 cut(s)	2352
BstSCI	CCNGG	9 cut(s)	352, 424, 797, 2541, 2721, 2815, 3124, 3510, 3948
BstSFI	CTRYAG	7 cut(s)	232, 1263, 1297, 2160, 2250, 2614, 3549
BstSLI	GKGCMC	1 cut(s)	2518
BstUI	CGCG	1 cut(s)	2713
BstV2I	GAAGAC	3 cut(s)	13, 2352, 3000
BstX2I	RGATCY	3 cut(s)	1154, 1190, 1991
BstXI	CCANNNNNNTGG	2 cut(s)	1009, 2887
BstYI	RGATCY	3 cut(s)	1154, 1190, 1991
BstZ17I	GTATAC	1 cut(s)	2973
Bsu15I	ATCGAT	1 cut(s)	869
BsuTUI	ATCGAT	1 cut(s)	869
BtgI	CCRYGG	1 cut(s)	3525
BtgZI	GCGATG	2 cut(s)	2389, 3162
BtsCI	GGATG	6 cut(s)	885, 1833, 2122, 2596, 2688, 3958
BtsI	GCAGTG	2 cut(s)	1396, 2949
BveI	ACCTGC	1 cut(s)	4046
Cac8I	GCNNGC	7 cut(s)	151, 472, 517, 1772, 1856, 3399, 3477
CaiI	CAGNNNCTG	1 cut(s)	3196
CfoI	GCGC	4 cut(s)	149, 312, 2048, 2715
Cfr13I	GGNCC	9 cut(s)	93, 675, 691, 883, 1202, 1795, 2197, 2813, 4019
ClaI	ATCGAT	1 cut(s)	869
CseI	GACGC	4 cut(s)	103, 226, 1794, 2045
DraI	TTTAAA	3 cut(s)	942, 1341, 1960
DriI	GACNNNNNGTC	1 cut(s)	1837
EaeI	YGGCCR	6 cut(s)	3, 1356, 2100, 3000, 3625, 3978
Eam1104I	CTCTTC	2 cut(s)	1170, 3847
Eam1105I	GACNNNNNGTC	1 cut(s)	1837
EarI	CTCTTC	2 cut(s)	1170, 3847
Ecl136II	GAGCTC	1 cut(s)	49
Eco130I	CCWWGG	2 cut(s)	271, 3525
Eco147I	AGGCCT	2 cut(s)	270, 3948
Eco24I	GRGCYC	3 cut(s)	51, 420, 897
Eco31I	GGTCTC	2 cut(s)	1306, 3109
Eco32I	GATATC	2 cut(s)	497, 1966
Eco47I	GGWCC	7 cut(s)	93, 675, 691, 883, 1202, 2197, 2813
Eco47III	AGCGCT	1 cut(s)	311
Eco53kI	GAGCTC	1 cut(s)	49
Eco57I	CTGAAG	6 cut(s)	298, 722, 1008, 1077, 1557, 2865
Eco88I	CYCGRG	2 cut(s)	80, 3084
EcoICRI	GAGCTC	1 cut(s)	49
EcoNI	CCTNNNNNAGG	1 cut(s)	1539
EcoO109I	RGGNCCY	4 cut(s)	675, 1202, 2197, 2813
EcoRI	GAATTC	2 cut(s)	211, 3032
EcoRII	CCWGG	4 cut(s)	2721, 2815, 3124, 3948
EcoRV	GATATC	2 cut(s)	497, 1966
EcoT14I	CCWWGG	2 cut(s)	271, 3525
EcoT22I	ATGCAT	1 cut(s)	1330
EcoT38I	GRGCYC	3 cut(s)	51, 420, 897
ErhI	CCWWGG	2 cut(s)	271, 3525
Esp3I	CGTCTC	1 cut(s)	279
FalI	AAGNNNNNCTT	2 cut(s)	3455, 3487
FaqI	GGGAC	6 cut(s)	79, 486, 814, 1188, 2183, 3005
FauNDI	CATATG	2 cut(s)	966, 1008
FbaI	TGATCA	1 cut(s)	2257
FblI	GTMKAC	2 cut(s)	1827, 2972
FokI	GGATG	6 cut(s)	892, 1820, 2129, 2583, 2695, 3965
FriOI	GRGCYC	3 cut(s)	51, 420, 897
GlaI	GCGC	4 cut(s)	148, 311, 2047, 2714
GsuI	CTGGAG	2 cut(s)	1809, 3108
HaeII	RGCGCY	2 cut(s)	150, 313
HgaI	GACGC	4 cut(s)	103, 226, 1794, 2045
HhaI	GCGC	4 cut(s)	149, 312, 2048, 2715
Hin6I	GCGC	4 cut(s)	147, 310, 2046, 2713
HinP1I	GCGC	4 cut(s)	147, 310, 2046, 2713
HincII	GTYRAC	3 cut(s)	31, 241, 541
HindII	GTYRAC	3 cut(s)	31, 241, 541
HindIII	AAGCTT	4 cut(s)	936, 1570, 3013, 3849
HinfI	GANTC	6 cut(s)	1124, 1269, 1552, 2625, 3347, 3631
HpaI	GTTAAC	1 cut(s)	31
HphI	GGTGA	8 cut(s)	296, 779, 971, 1823, 1833, 2240, 2969, 3869
Hpy99I	CGWCG	2 cut(s)	62, 685
HpyCH4IV	ACGT	2 cut(s)	3755, 3832
HpySE526I	ACGT	2 cut(s)	3755, 3832
HspAI	GCGC	4 cut(s)	147, 310, 2046, 2713
KflI	GGGWCCC	1 cut(s)	1202
Ksp22I	TGATCA	1 cut(s)	2257
KspAI	GTTAAC	1 cut(s)	31
LmnI	GCTCC	9 cut(s)	54, 254, 573, 733, 905, 1790, 1862, 2143, 3406
LweI	GCATC	5 cut(s)	502, 2605, 2665, 2876, 3441
MaeII	ACGT	2 cut(s)	3755, 3832
MaeIII	GTNAC	5 cut(s)	913, 1249, 1839, 3517, 3867
MbiI	CCGCTC	1 cut(s)	1793
MfeI	CAATTG	2 cut(s)	909, 3416
MflI	RGATCY	3 cut(s)	1154, 1190, 1991
MhlI	GDGCHC	5 cut(s)	51, 420, 897, 2518, 2755
MlsI	TGGCCA	2 cut(s)	3002, 3627
MluNI	TGGCCA	2 cut(s)	3002, 3627
MlyI	GAGTC	3 cut(s)	1263, 3356, 3640
MmeI	TCCRAC	2 cut(s)	1152, 3151
Mox20I	TGGCCA	2 cut(s)	3002, 3627
Mph1103I	ATGCAT	1 cut(s)	1330
MroXI	GAANNNNTTC	2 cut(s)	1164, 1179
MscI	TGGCCA	2 cut(s)	3002, 3627
MslI	CAYNNNNRTG	2 cut(s)	1695, 2885
Msp20I	TGGCCA	2 cut(s)	3002, 3627
MspA1I	CMGCKG	4 cut(s)	246, 318, 486, 722
MspCI	CTTAAG	1 cut(s)	2732
MspR9I	CCNGG	9 cut(s)	354, 426, 799, 2543, 2723, 2817, 3126, 3512, 3950
MunI	CAATTG	2 cut(s)	909, 3416
Mva1269I	GAATGC	2 cut(s)	2421, 3138
MvaI	CCWGG	4 cut(s)	2723, 2817, 3126, 3950
MvnI	CGCG	1 cut(s)	2713
NciI	CCSGG	5 cut(s)	354, 426, 799, 2543, 3512
NcoI	CCATGG	1 cut(s)	3525
NdeI	CATATG	2 cut(s)	966, 1008
NheI	GCTAGC	1 cut(s)	3397
NlaIV	GGNNCC	7 cut(s)	95, 693, 1203, 1204, 2145, 2199, 3238
NmeAIII	GCCGAG	1 cut(s)	102
NmuCI	GTSAC	1 cut(s)	1839
NsiI	ATGCAT	1 cut(s)	1330
NspI	RCATGY	5 cut(s)	361, 1436, 2093, 2514, 2864
PaeR7I	CTCGAG	2 cut(s)	80, 3084
PceI	AGGCCT	2 cut(s)	270, 3948
PciI	ACATGT	1 cut(s)	2860
PcsI	WCGNNNNNNNCGW	2 cut(s)	24, 129
PctI	GAATGC	2 cut(s)	2421, 3138
PdmI	GAANNNNTTC	2 cut(s)	1164, 1179
PfeI	GAWTC	3 cut(s)	1124, 1552, 2625
Pfl23II	CGTACG	1 cut(s)	1891
PleI	GAGTC	3 cut(s)	1263, 3355, 3639
PpsI	GAGTC	3 cut(s)	1263, 3355, 3639
PpuMI	RGGWCCY	4 cut(s)	675, 1202, 2197, 2813
PscI	ACATGT	1 cut(s)	2860
PshAI	GACNNNNGTC	1 cut(s)	2352
PsiI	TTATAA	2 cut(s)	621, 1781
Psp124BI	GAGCTC	1 cut(s)	51
Psp5II	RGGWCCY	4 cut(s)	675, 1202, 2197, 2813
Psp6I	CCWGG	4 cut(s)	2721, 2815, 3124, 3948
PspGI	CCWGG	4 cut(s)	2721, 2815, 3124, 3948
PspLI	CGTACG	1 cut(s)	1891
PspN4I	GGNNCC	7 cut(s)	95, 693, 1203, 1204, 2145, 2199, 3238
PspPI	GGNCC	9 cut(s)	93, 675, 691, 883, 1202, 1795, 2197, 2813, 4019
PspPPI	RGGWCCY	4 cut(s)	675, 1202, 2197, 2813
PspXI	VCTCGAGB	1 cut(s)	80
PstI	CTGCAG	2 cut(s)	236, 3553
PstNI	CAGNNNCTG	1 cut(s)	3196
PsuI	RGATCY	3 cut(s)	1154, 1190, 1991
PvuII	CAGCTG	1 cut(s)	722
RseI	CAYNNNNRTG	2 cut(s)	1695, 2885
SacI	GAGCTC	1 cut(s)	51
Sau96I	GGNCC	9 cut(s)	93, 675, 691, 883, 1202, 1795, 2197, 2813, 4019
ScaI	AGTACT	1 cut(s)	3807
SchI	GAGTC	3 cut(s)	1263, 3356, 3640
ScrFI	CCNGG	9 cut(s)	354, 426, 799, 2543, 2723, 2817, 3126, 3512, 3950
SduI	GDGCHC	5 cut(s)	51, 420, 897, 2518, 2755
SfaNI	GCATC	5 cut(s)	502, 2605, 2665, 2876, 3441
SfcI	CTRYAG	7 cut(s)	232, 1263, 1297, 2160, 2250, 2614, 3549
Sfr274I	CTCGAG	2 cut(s)	80, 3084
SinI	GGWCC	7 cut(s)	93, 675, 691, 883, 1202, 2197, 2813
SlaI	CTCGAG	2 cut(s)	80, 3084
SmiI	ATTTAAAT	1 cut(s)	1341
SmiMI	CAYNNNNRTG	2 cut(s)	1695, 2885
SmlI	CTYRAG	6 cut(s)	80, 413, 1480, 2732, 3084, 3407
SmoI	CTYRAG	6 cut(s)	80, 413, 1480, 2732, 3084, 3407
SseBI	AGGCCT	2 cut(s)	270, 3948
SspI	AATATT	2 cut(s)	1654, 3597
SstI	GAGCTC	1 cut(s)	51
StuI	AGGCCT	2 cut(s)	270, 3948
StyD4I	CCNGG	9 cut(s)	352, 424, 797, 2541, 2721, 2815, 3124, 3510, 3948
StyI	CCWWGG	2 cut(s)	271, 3525
SwaI	ATTTAAAT	1 cut(s)	1341
TaiI	ACGT	2 cut(s)	3758, 3835
TaqI	TCGA	6 cut(s)	60, 81, 869, 1272, 1519, 3085
TaqII	GACCGA	1 cut(s)	423
TatI	WGTACW	6 cut(s)	347, 641, 1213, 1748, 1877, 3805
TfiI	GAWTC	3 cut(s)	1124, 1552, 2625
TseFI	GTSAC	1 cut(s)	1839
Tsp45I	GTSAC	1 cut(s)	1839
TspDTI	ATGAA	9 cut(s)	204, 1515, 1691, 1858, 2142, 2358, 2618, 3099, 3685
TspGWI	ACGGA	2 cut(s)	2429, 3855
Vha464I	CTTAAG	1 cut(s)	2732
VneI	GTGCAC	1 cut(s)	2514
VpaK11BI	GGWCC	7 cut(s)	93, 675, 691, 883, 1202, 2197, 2813
XagI	CCTNNNNNAGG	1 cut(s)	1539
XapI	RAATTY	8 cut(s)	211, 1060, 1629, 3032, 3044, 3078, 3718, 3762
XbaI	TCTAGA	1 cut(s)	2965
XceI	RCATGY	5 cut(s)	361, 1436, 2093, 2514, 2864
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3973
XhoI	CTCGAG	2 cut(s)	80, 3084
XmiI	GTMKAC	2 cut(s)	1827, 2972
XmnI	GAANNNNTTC	2 cut(s)	1164, 1179
ZrmI	AGTACT	1 cut(s)	3807
Zsp2I	ATGCAT	1 cut(s)	1330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.