AT3G45020

Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005691
Physical Location & Seq
Reverse (-)
16468961 .. 16470263
1303 bp
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UTR
Exon/CDS
Intron
AT3G45020.3

Sequence Viewer

Length: 402 bp
ATGACAGTTTTGAAAAGGTACGTCTTAAGGCTGTTCATGTCGATCAAGTACATAACAGCAAACGTAGTGGACAGAAACAACGGGAGAATAGTGACGACAGCTTCAACCGTAGAGCACACGATCAAGAACTCCCTAGAGTGTGGCCGTACTTGCAATGCTAAGGCGGCGGCTATCGTAGGAGAGGTTTTAGCAATGAGGCTGAAAGTGGAAGGGCTTCAGGATGGGCAAGGAAGAGGAATACATGCTGATGTCAAGAAAGAAATCGAAAAGAAAGGGTTTAAGAGTCGAACTAAGGTATGGGCTGTTATTAACTCTCTTAGAAACAATGGTGTTACACTCATTCTTGACGATGATGATGATGATGATGAGTATCGTGATCGTTCTTTTGAGGGTCATCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L18p

Protein Analysis

133

Amino Acids

14.98

Weight (kDa)

9.17

Isoelectric Point (pI)

18.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L18p PF00861 5 - 73 9.2e-08 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 164, 167
AcoI YGGCCR 1 cut(s) 142
AcuI CTGAAG 1 cut(s) 200
AfaI GTAC 3 cut(s) 20, 50, 148
AflII CTTAAG 1 cut(s) 25
AgsI TTSAA 2 cut(s) 13, 105
AluBI AGCT 1 cut(s) 101
AluI AGCT 1 cut(s) 101
Alw21I GWGCWC 1 cut(s) 117
AoxI GGCC 1 cut(s) 142
Asp700I GAANNNNTTC 1 cut(s) 213
Bbv12I GWGCWC 1 cut(s) 117
BccI CCATC 1 cut(s) 215
BceAI ACGGC 1 cut(s) 129
BfaI CTAG 1 cut(s) 134
BfrI CTTAAG 1 cut(s) 25
BisI GCNGC 2 cut(s) 165, 168
BlsI GCNGC 2 cut(s) 166, 169
Bpu10I CCTNAGC 1 cut(s) 159
BsaBI GATNNNNATC 1 cut(s) 369
Bse3DI GCAATG 2 cut(s) 160, 198
Bse8I GATNNNNATC 1 cut(s) 369
BseGI GGATG 1 cut(s) 226
BseJI GATNNNNATC 1 cut(s) 369
BseMI GCAATG 2 cut(s) 160, 198
BshFI GGCC 1 cut(s) 144
BsiHKAI GWGCWC 1 cut(s) 117
BsnI GGCC 1 cut(s) 144
Bsp1286I GDGCHC 1 cut(s) 117
Bsp143I GATC 3 cut(s) 42, 120, 376
BspACI CCGC 2 cut(s) 164, 167
BspANI GGCC 1 cut(s) 144
BspTI CTTAAG 1 cut(s) 25
BsrDI GCAATG 2 cut(s) 160, 198
BssMI GATC 3 cut(s) 42, 120, 376
Bst4CI ACNGT 2 cut(s) 7, 109
Bst6I CTCTTC 1 cut(s) 226
BstAFI CTTAAG 1 cut(s) 25
BstDEI CTNAG 3 cut(s) 159, 291, 317
BstF5I GGATG 1 cut(s) 226
BstKTI GATC 3 cut(s) 45, 123, 379
BstMBI GATC 3 cut(s) 42, 120, 376
BstMWI GCNNNNNNNGC 2 cut(s) 150, 164
BstNSI RCATGY 1 cut(s) 245
BsuRI GGCC 1 cut(s) 144
BtsCI GGATG 1 cut(s) 226
Csp6I GTAC 3 cut(s) 19, 49, 147
CspCI CAANNNNNGTGG 2 cut(s) 48, 83
CviAII CATG 2 cut(s) 37, 242
CviJI RGCY 7 cut(s) 31, 101, 144, 170, 199, 214, 302
CviKI_1 RGCY 7 cut(s) 31, 101, 144, 170, 199, 214, 302
CviQI GTAC 3 cut(s) 19, 49, 147
DdeI CTNAG 3 cut(s) 159, 291, 317
DpnI GATC 3 cut(s) 44, 122, 378
DpnII GATC 3 cut(s) 42, 120, 376
EaeI YGGCCR 1 cut(s) 142
Eam1104I CTCTTC 1 cut(s) 226
EarI CTCTTC 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 200
FaeI CATG 2 cut(s) 40, 245
FaiI YATR 4 cut(s) 38, 53, 243, 298
FatI CATG 2 cut(s) 36, 241
Fnu4HI GCNGC 2 cut(s) 165, 168
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 2 cut(s) 165, 168
FspBI CTAG 1 cut(s) 134
GluI GCNGC 2 cut(s) 165, 168
HaeIII GGCC 1 cut(s) 144
Hin1II CATG 2 cut(s) 40, 245
HinfI GANTC 1 cut(s) 283
Hpy166II GTNNAC 1 cut(s) 70
Hpy188III TCNNGA 5 cut(s) 124, 218, 253, 344, 374
Hpy8I GTNNAC 1 cut(s) 70
HpyAV CCTTC 1 cut(s) 203
HpyCH4III ACNGT 2 cut(s) 7, 109
HpyCH4IV ACGT 2 cut(s) 21, 63
HpyCH4V TGCA 1 cut(s) 153
HpyF10VI GCNNNNNNNGC 2 cut(s) 150, 164
HpyF3I CTNAG 3 cut(s) 159, 291, 317
HpySE526I ACGT 2 cut(s) 21, 63
Hsp92II CATG 2 cut(s) 40, 245
Kzo9I GATC 3 cut(s) 42, 120, 376
LpnPI CCDG 1 cut(s) 203
MaeI CTAG 1 cut(s) 134
MaeII ACGT 2 cut(s) 21, 63
MaeIII GTNAC 2 cut(s) 91, 331
MalI GATC 3 cut(s) 44, 122, 378
MboI GATC 3 cut(s) 42, 120, 376
MboII GAAGA 1 cut(s) 243
MhlI GDGCHC 1 cut(s) 117
MlyI GAGTC 1 cut(s) 292
MnlI CCTC 4 cut(s) 175, 189, 227, 382
MroXI GAANNNNTTC 1 cut(s) 213
MseI TTAA 3 cut(s) 26, 279, 309
MslI CAYNNNNRTG 1 cut(s) 246
MspCI CTTAAG 1 cut(s) 25
MwoI GCNNNNNNNGC 2 cut(s) 150, 164
NdeII GATC 3 cut(s) 42, 120, 376
NlaIII CATG 2 cut(s) 40, 245
NmuCI GTSAC 1 cut(s) 91
NspI RCATGY 1 cut(s) 245
PdmI GAANNNNTTC 1 cut(s) 213
PkrI GCNGC 2 cut(s) 166, 169
PleI GAGTC 1 cut(s) 291
PpsI GAGTC 1 cut(s) 291
RsaI GTAC 3 cut(s) 20, 50, 148
RsaNI GTAC 3 cut(s) 19, 49, 147
RseI CAYNNNNRTG 1 cut(s) 246
SaqAI TTAA 3 cut(s) 26, 279, 309
SatI GCNGC 2 cut(s) 165, 168
Sau3AI GATC 3 cut(s) 42, 120, 376
SchI GAGTC 1 cut(s) 292
SduI GDGCHC 1 cut(s) 117
SetI ASST 6 cut(s) 20, 24, 66, 103, 186, 297
SmiMI CAYNNNNRTG 1 cut(s) 246
SmlI CTYRAG 1 cut(s) 25
SmoI CTYRAG 1 cut(s) 25
SsiI CCGC 2 cut(s) 164, 167
SspMI CTAG 1 cut(s) 134
TaaI ACNGT 2 cut(s) 7, 109
TaiI ACGT 2 cut(s) 24, 66
TaqI TCGA 3 cut(s) 41, 264, 286
TatI WGTACW 1 cut(s) 48
TauI GCSGC 2 cut(s) 167, 170
Tru1I TTAA 3 cut(s) 26, 279, 309
Tru9I TTAA 3 cut(s) 26, 279, 309
TseFI GTSAC 1 cut(s) 91
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 1 cut(s) 25
Vha464I CTTAAG 1 cut(s) 25
XceI RCATGY 1 cut(s) 245
XmnI GAANNNNTTC 1 cut(s) 213
XspI CTAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.