Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001849.1

Orthogroup ID

OG0005691

Physical Location & Seq

Genomic Coordinates Reverse (-)

48211 .. 51760

Gene Structure 3550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001849.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

atgaacgaacgagataagagagataaacgattgggccggggcggaccttgcgaagaagagaaggcgatcggagaagagagcgcgagggcggtggggctcagatctgggatcggtggtggttctcaggcggtgtggttgggtcgtggcctgacacgtgttcaggatctgtcggcagtcccagactatggctttgggttacgtattcaatttgctattgatttgtctccacgtgacacggcaccgtttcggttcaacccaaaacgcagcgttttcggttcagcccaaaacgcggcgtttcggtctctttggcagcataaacaccctgctccttgcaattctgtctctatcgcttttacaaactcagcagtctggttatgtttttgggagtgtccaagaatgagtcttatgaagcggtatgtgctgcggttgttcatatcattgaagtacatcacagcaaacgtcgttgacagaaataatggccggattgttgtaacagcatctacaattgaacattcagttaagagctcgctcgagtgtggccgctcttgcaatgcaaaggcggcagcagttgttggagaggtgctcgctatgcgacttaaggtggaaggtctagaccagggacagggacgagggattcatgtcaatgtaaataatgaagttgagaagaagggttttaagaaccgtaccaaggtatgggctattgtcaatgctcttaaaaacaatggagttaaactcattcttgatgataatgatgaaaatagttctcagccaagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L18p

Protein Analysis

258

Amino Acids

28.43

Weight (kDa)

9.75

Isoelectric Point (pI)

39.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45020 AT3G45020 AT3G45020 AT3G45020
fragaria_vesca	FvH4_3g31090 FvH4_3g31090 FvH4_3g31090 FvH4_3g31090
malus_domestica	MD00G1033500.v1.1
prunus_persica	Prupe.6G108700_v2.0.a1
pyrus_communis	pycom11g11870
rosa_chinensis	RchiOBHm_Chr4g0444611 RchiOBHm_Chr5g0057731
rosa_laevigata	RLG00000005818 RLG00000035172
rosa_multiflora	Rmu_sc0001849.1_g000011
rosa_roxburghii	Rroxscaffold_1G00022760
rosa_rugosa	Rorug05G0309100 Rorug05G0309100 Rorug05G0309100
rosa_samantha	Rh4AG414300 Rh4BG425900 Rh4CG440600 Rh4DG421600 Rh5BG388500 Rh5CG412900 Rh5DG402800
rosa_wichuraiana	Rw5G035590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	238
AccB7I	CCANNNNNTGG	2 cut(s)	185, 693
AccBSI	CCGCTC	1 cut(s)	543
AccII	CGCG	2 cut(s)	83, 290
AciI	CCGC	8 cut(s)	42, 89, 128, 290, 412, 424, 541, 560
AclWI	GGATC	2 cut(s)	116, 171
AcoI	YGGCCR	2 cut(s)	478, 538
AcvI	CACGTG	2 cut(s)	155, 230
AfaI	GTAC	2 cut(s)	446, 685
AfiI	CCNNNNNNNGG	5 cut(s)	185, 289, 622, 688, 693
AflII	CTTAAG	1 cut(s)	596
AflIII	ACRYGT	2 cut(s)	152, 154
AgsI	TTSAA	4 cut(s)	206, 253, 442, 509
AjnI	CCWGG	1 cut(s)	615
AluBI	AGCT	1 cut(s)	525
AluI	AGCT	1 cut(s)	525
Alw21I	GWGCWC	2 cut(s)	527, 585
Alw26I	GTCTC	3 cut(s)	228, 306, 346
AlwI	GGATC	2 cut(s)	116, 171
AlwNI	CAGNNNCTG	1 cut(s)	166
Ama87I	CYCGRG	1 cut(s)	530
AoxI	GGCC	4 cut(s)	34, 145, 478, 538
ApeKI	GCWGC	4 cut(s)	264, 310, 421, 563
ArsI	GACNNNNNNTTYG	2 cut(s)	173, 205
AspLEI	GCGC	1 cut(s)	83
AspS9I	GGNCC	2 cut(s)	34, 44
AsuC2I	CCSGG	1 cut(s)	38
AvaI	CYCGRG	1 cut(s)	530
AvaII	GGWCC	1 cut(s)	44
BanI	GGYRCC	1 cut(s)	238
BanII	GRGCYC	2 cut(s)	99, 527
BbrPI	CACGTG	2 cut(s)	155, 230
Bbv12I	GWGCWC	2 cut(s)	527, 585
BbvI	GCAGC	4 cut(s)	276, 322, 408, 575
BceAI	ACGGC	1 cut(s)	252
BcgI	CGANNNNNNTGC	2 cut(s)	253, 287
BciT130I	CCWGG	1 cut(s)	617
BcnI	CCSGG	1 cut(s)	38
BcoDI	GTCTC	3 cut(s)	228, 306, 346
BfaI	CTAG	1 cut(s)	611
BfrI	CTTAAG	1 cut(s)	596
BglII	AGATCT	1 cut(s)	101
BisI	GCNGC	7 cut(s)	265, 291, 311, 422, 541, 561, 564
BlsI	GCNGC	7 cut(s)	266, 292, 312, 423, 542, 562, 565
Bme1390I	CCNGG	2 cut(s)	38, 617
Bme18I	GGWCC	1 cut(s)	44
BmeT110I	CYCGRG	1 cut(s)	530
BmgT120I	GGNCC	2 cut(s)	34, 44
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	2 cut(s)	38, 617
BmsI	GCATC	1 cut(s)	506
BplI	GAGNNNNNCTC	4 cut(s)	567, 599, 717, 749
BpuMI	CCSGG	1 cut(s)	38
BsaAI	YACGTR	3 cut(s)	155, 200, 230
BsaI	GGTCTC	1 cut(s)	306
BsaJI	CCNNGG	3 cut(s)	37, 616, 687
Bsc4I	CCNNNNNNNGG	5 cut(s)	185, 289, 622, 688, 693
Bse3DI	GCAATG	1 cut(s)	556
BseBI	CCWGG	1 cut(s)	617
BseDI	CCNNGG	3 cut(s)	37, 616, 687
BseLI	CCNNNNNNNGG	5 cut(s)	185, 289, 622, 688, 693
BseMI	GCAATG	1 cut(s)	556
BseMII	CTCAG	3 cut(s)	112, 137, 375
BseXI	GCAGC	4 cut(s)	276, 322, 408, 575
Bsh1236I	CGCG	2 cut(s)	83, 290
Bsh1285I	CGRYCG	1 cut(s)	69
BshFI	GGCC	4 cut(s)	36, 147, 480, 540
BshNI	GGYRCC	1 cut(s)	238
BsiEI	CGRYCG	1 cut(s)	69
BsiHKAI	GWGCWC	2 cut(s)	527, 585
BsiHKCI	CYCGRG	1 cut(s)	530
BsiSI	CCGG	2 cut(s)	37, 481
BslFI	GGGAC	3 cut(s)	161, 633, 639
BslI	CCNNNNNNNGG	5 cut(s)	185, 289, 622, 688, 693
BsmAI	GTCTC	3 cut(s)	228, 306, 346
BsmFI	GGGAC	3 cut(s)	161, 633, 639
BsnI	GGCC	4 cut(s)	36, 147, 480, 540
Bso31I	GGTCTC	1 cut(s)	306
BsoBI	CYCGRG	1 cut(s)	530
Bsp1286I	GDGCHC	3 cut(s)	99, 527, 585
Bsp143I	GATC	4 cut(s)	66, 101, 108, 163
BspACI	CCGC	8 cut(s)	42, 89, 128, 290, 412, 424, 541, 560
BspANI	GGCC	4 cut(s)	36, 147, 480, 540
BspCNI	CTCAG	3 cut(s)	111, 136, 374
BspFNI	CGCG	2 cut(s)	83, 290
BspLI	GGNNCC	1 cut(s)	240
BspPI	GGATC	2 cut(s)	116, 171
BspT107I	GGYRCC	1 cut(s)	238
BspTI	CTTAAG	1 cut(s)	596
BspTNI	GGTCTC	1 cut(s)	306
BsrBI	CCGCTC	1 cut(s)	543
BsrDI	GCAATG	1 cut(s)	556
BssECI	CCNNGG	3 cut(s)	37, 616, 687
BssMI	GATC	4 cut(s)	66, 101, 108, 163
BssT1I	CCWWGG	1 cut(s)	687
Bst2UI	CCWGG	1 cut(s)	617
Bst4CI	ACNGT	2 cut(s)	243, 683
Bst6I	CTCTTC	2 cut(s)	51, 69
BstAFI	CTTAAG	1 cut(s)	596
BstBAI	YACGTR	3 cut(s)	155, 200, 230
BstC8I	GCNNGC	2 cut(s)	527, 585
BstDEI	CTNAG	4 cut(s)	98, 123, 361, 765
BstFNI	CGCG	2 cut(s)	83, 290
BstHHI	GCGC	1 cut(s)	83
BstKTI	GATC	4 cut(s)	69, 104, 111, 166
BstMAI	GTCTC	3 cut(s)	228, 306, 346
BstMBI	GATC	4 cut(s)	66, 101, 108, 163
BstMCI	CGRYCG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	6 cut(s)	48, 287, 418, 546, 560, 589
BstNI	CCWGG	1 cut(s)	617
BstSCI	CCNGG	2 cut(s)	36, 615
BstSNI	TACGTA	1 cut(s)	200
BstUI	CGCG	2 cut(s)	83, 290
BstV1I	GCAGC	4 cut(s)	276, 322, 408, 575
BstX2I	RGATCY	2 cut(s)	101, 163
BstYI	RGATCY	2 cut(s)	101, 163
BsuRI	GGCC	4 cut(s)	36, 147, 480, 540
Cac8I	GCNNGC	2 cut(s)	527, 585
CaiI	CAGNNNCTG	1 cut(s)	166
CfoI	GCGC	1 cut(s)	83
Cfr13I	GGNCC	2 cut(s)	34, 44
Csp6I	GTAC	2 cut(s)	445, 684
CviAII	CATG	1 cut(s)	638
CviQI	GTAC	2 cut(s)	445, 684
DdeI	CTNAG	4 cut(s)	98, 123, 361, 765
DpnI	GATC	4 cut(s)	68, 103, 110, 165
DpnII	GATC	4 cut(s)	66, 101, 108, 163
EaeI	YGGCCR	2 cut(s)	478, 538
Eam1104I	CTCTTC	2 cut(s)	51, 69
EarI	CTCTTC	2 cut(s)	51, 69
EciI	GGCGGA	1 cut(s)	57
Ecl136II	GAGCTC	1 cut(s)	525
Eco105I	TACGTA	1 cut(s)	200
Eco130I	CCWWGG	1 cut(s)	687
Eco24I	GRGCYC	2 cut(s)	99, 527
Eco31I	GGTCTC	1 cut(s)	306
Eco47I	GGWCC	1 cut(s)	44
Eco53kI	GAGCTC	1 cut(s)	525
Eco72I	CACGTG	2 cut(s)	155, 230
Eco88I	CYCGRG	1 cut(s)	530
EcoICRI	GAGCTC	1 cut(s)	525
EcoRII	CCWGG	1 cut(s)	615
EcoT14I	CCWWGG	1 cut(s)	687
EcoT38I	GRGCYC	2 cut(s)	99, 527
ErhI	CCWWGG	1 cut(s)	687
FaeI	CATG	1 cut(s)	641
FaiI	YATR	9 cut(s)	186, 315, 376, 407, 417, 434, 590, 639, 694
FaqI	GGGAC	3 cut(s)	161, 633, 639
FatI	CATG	1 cut(s)	637
Fnu4HI	GCNGC	7 cut(s)	265, 291, 311, 422, 541, 561, 564
FriOI	GRGCYC	2 cut(s)	99, 527
Fsp4HI	GCNGC	7 cut(s)	265, 291, 311, 422, 541, 561, 564
FspBI	CTAG	1 cut(s)	611
GlaI	GCGC	1 cut(s)	82
GluI	GCNGC	7 cut(s)	265, 291, 311, 422, 541, 561, 564
HaeIII	GGCC	4 cut(s)	36, 147, 480, 540
HapII	CCGG	2 cut(s)	37, 481
HhaI	GCGC	1 cut(s)	83
Hin1II	CATG	1 cut(s)	641
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HincII	GTYRAC	1 cut(s)	466
HindII	GTYRAC	1 cut(s)	466
HinfI	GANTC	2 cut(s)	400, 634
HpaII	CCGG	2 cut(s)	37, 481
Hpy166II	GTNNAC	1 cut(s)	466
Hpy188I	TCNGA	2 cut(s)	71, 101
Hpy188III	TCNNGA	3 cut(s)	161, 611, 740
Hpy8I	GTNNAC	1 cut(s)	466
Hpy99I	CGWCG	1 cut(s)	464
HpyAV	CCTTC	3 cut(s)	55, 599, 661
HpyCH4III	ACNGT	2 cut(s)	243, 683
HpyCH4IV	ACGT	4 cut(s)	154, 199, 229, 459
HpyCH4V	TGCA	3 cut(s)	333, 549, 554
HpyF10VI	GCNNNNNNNGC	6 cut(s)	48, 287, 418, 546, 560, 589
HpyF3I	CTNAG	4 cut(s)	98, 123, 361, 765
HpySE526I	ACGT	4 cut(s)	154, 199, 229, 459
Hsp92II	CATG	1 cut(s)	641
HspAI	GCGC	1 cut(s)	81
Kzo9I	GATC	4 cut(s)	66, 101, 108, 163
LmnI	GCTCC	1 cut(s)	331
Lsp1109I	GCAGC	4 cut(s)	276, 322, 408, 575
LweI	GCATC	1 cut(s)	506
MaeI	CTAG	1 cut(s)	611
MaeII	ACGT	4 cut(s)	154, 199, 229, 459
MaeIII	GTNAC	3 cut(s)	195, 230, 490
MalI	GATC	4 cut(s)	68, 103, 110, 165
MbiI	CCGCTC	1 cut(s)	543
MboI	GATC	4 cut(s)	66, 101, 108, 163
MboII	GAAGA	4 cut(s)	65, 68, 86, 676
MfeI	CAATTG	1 cut(s)	504
MflI	RGATCY	2 cut(s)	101, 163
MhlI	GDGCHC	3 cut(s)	99, 527, 585
MluCI	AATT	3 cut(s)	206, 334, 504
MlyI	GAGTC	1 cut(s)	409
MmeI	TCCRAC	1 cut(s)	553
MnlI	CCTC	3 cut(s)	78, 571, 623
MseI	TTAA	6 cut(s)	519, 597, 675, 714, 729, 775
MslI	CAYNNNNRTG	1 cut(s)	642
MspCI	CTTAAG	1 cut(s)	596
MspI	CCGG	2 cut(s)	37, 481
MspR9I	CCNGG	2 cut(s)	38, 617
MunI	CAATTG	1 cut(s)	504
MvaI	CCWGG	1 cut(s)	617
MvnI	CGCG	2 cut(s)	83, 290
MwoI	GCNNNNNNNGC	6 cut(s)	48, 287, 418, 546, 560, 589
NciI	CCSGG	1 cut(s)	38
NdeII	GATC	4 cut(s)	66, 101, 108, 163
NlaIII	CATG	1 cut(s)	641
NlaIV	GGNNCC	1 cut(s)	240
NmuCI	GTSAC	1 cut(s)	230
PaeR7I	CTCGAG	1 cut(s)	530
PfeI	GAWTC	1 cut(s)	634
PflMI	CCANNNNNTGG	2 cut(s)	185, 693
PkrI	GCNGC	7 cut(s)	266, 292, 312, 423, 542, 562, 565
Ple19I	CGATCG	1 cut(s)	69
PleI	GAGTC	1 cut(s)	408
PmaCI	CACGTG	2 cut(s)	155, 230
PmlI	CACGTG	2 cut(s)	155, 230
PpsI	GAGTC	1 cut(s)	408
Ppu21I	YACGTR	3 cut(s)	155, 200, 230
Psp124BI	GAGCTC	1 cut(s)	527
Psp6I	CCWGG	1 cut(s)	615
PspCI	CACGTG	2 cut(s)	155, 230
PspGI	CCWGG	1 cut(s)	615
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	2 cut(s)	34, 44
PspXI	VCTCGAGB	1 cut(s)	530
PstNI	CAGNNNCTG	1 cut(s)	166
PsuI	RGATCY	2 cut(s)	101, 163
PvuI	CGATCG	1 cut(s)	69
RsaI	GTAC	2 cut(s)	446, 685
RsaNI	GTAC	2 cut(s)	445, 684
RseI	CAYNNNNRTG	1 cut(s)	642
SacI	GAGCTC	1 cut(s)	527
SaqAI	TTAA	6 cut(s)	519, 597, 675, 714, 729, 775
SatI	GCNGC	7 cut(s)	265, 291, 311, 422, 541, 561, 564
Sau3AI	GATC	4 cut(s)	66, 101, 108, 163
Sau96I	GGNCC	2 cut(s)	34, 44
SchI	GAGTC	1 cut(s)	409
ScrFI	CCNGG	2 cut(s)	38, 617
SduI	GDGCHC	3 cut(s)	99, 527, 585
SfaNI	GCATC	1 cut(s)	506
Sfr274I	CTCGAG	1 cut(s)	530
SinI	GGWCC	1 cut(s)	44
SlaI	CTCGAG	1 cut(s)	530
SmiMI	CAYNNNNRTG	1 cut(s)	642
SmlI	CTYRAG	2 cut(s)	530, 596
SmoI	CTYRAG	2 cut(s)	530, 596
SnaBI	TACGTA	1 cut(s)	200
Sse9I	AATT	3 cut(s)	206, 334, 504
SsiI	CCGC	8 cut(s)	42, 89, 128, 290, 412, 424, 541, 560
SspMI	CTAG	1 cut(s)	611
SstI	GAGCTC	1 cut(s)	527
StyD4I	CCNGG	2 cut(s)	36, 615
StyI	CCWWGG	1 cut(s)	687
TaaI	ACNGT	2 cut(s)	243, 683
TaiI	ACGT	4 cut(s)	157, 202, 232, 462
TaqI	TCGA	1 cut(s)	531
TaqII	GACCGA	1 cut(s)	288
TasI	AATT	3 cut(s)	206, 334, 504
TatI	WGTACW	1 cut(s)	444
TauI	GCSGC	3 cut(s)	293, 543, 563
TfiI	GAWTC	1 cut(s)	634
Tru1I	TTAA	6 cut(s)	519, 597, 675, 714, 729, 775
Tru9I	TTAA	6 cut(s)	519, 597, 675, 714, 729, 775
TseFI	GTSAC	1 cut(s)	230
TseI	GCWGC	4 cut(s)	264, 310, 421, 563
Tsp45I	GTSAC	1 cut(s)	230
TspDTI	ATGAA	6 cut(s)	17, 421, 422, 626, 669, 768
Van91I	CCANNNNNTGG	2 cut(s)	185, 693
Vha464I	CTTAAG	1 cut(s)	596
VpaK11BI	GGWCC	1 cut(s)	44
XbaI	TCTAGA	1 cut(s)	610
XhoI	CTCGAG	1 cut(s)	530
XspI	CTAG	1 cut(s)	611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.