Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0005691

Physical Location & Seq

Genomic Coordinates Forward (+)

2089376 .. 2089745

Gene Structure 370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005818

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGCTTATGAAGCGGTATGCGCTGCGAATAATGGCCGAATTGTTGTAACAGCATCTACAATTGACCATTCAGTTAAGGGCTCACTCGAGTGTGGCCGCTCTTGCAACGCAAAGGCAGCAGCAGTTGTTGGAGAGGTGCTCGCTATGCAACTCAAGGTGGAAGGTCTTCACCAGGGGCAGGGACGAGGGATTCACGTCAATGTAAATAATGAAGTTGAAAAGAAGGGTTTTAAGAACCGTACCAAGGTATGGGCTATTGTCAATCCTCTTAAGAACAATGGAGTACTTAAACTCATTATTGATGACGATGAAGAAAATAGTTCTCGGCCAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L18p

Protein Analysis

112

Amino Acids

11.88

Weight (kDa)

8.51

Isoelectric Point (pI)

14.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45020 AT3G45020 AT3G45020 AT3G45020
fragaria_vesca	FvH4_3g31090 FvH4_3g31090 FvH4_3g31090 FvH4_3g31090
malus_domestica	MD00G1033500.v1.1
prunus_persica	Prupe.6G108700_v2.0.a1
pyrus_communis	pycom11g11870
rosa_chinensis	RchiOBHm_Chr4g0444611 RchiOBHm_Chr5g0057731
rosa_laevigata	RLG00000005818 RLG00000035172
rosa_multiflora	Rmu_sc0001849.1_g000011
rosa_roxburghii	Rroxscaffold_1G00022760
rosa_rugosa	Rorug05G0309100 Rorug05G0309100 Rorug05G0309100
rosa_samantha	Rh4AG414300 Rh4BG425900 Rh4CG440600 Rh4DG421600 Rh5BG388500 Rh5CG412900 Rh5DG402800
rosa_wichuraiana	Rw5G035590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	249
AccBSI	CCGCTC	1 cut(s)	99
AciI	CCGC	2 cut(s)	14, 97
AcoI	YGGCCR	3 cut(s)	34, 94, 326
AfaI	GTAC	2 cut(s)	241, 285
AfiI	CCNNNNNNNGG	3 cut(s)	178, 244, 249
AflII	CTTAAG	1 cut(s)	269
AgsI	TTSAA	1 cut(s)	218
AjiI	CACGTC	1 cut(s)	196
AjnI	CCWGG	1 cut(s)	171
AleI	CACNNNNGTG	1 cut(s)	88
Alw21I	GWGCWC	1 cut(s)	141
Ama87I	CYCGRG	1 cut(s)	86
AoxI	GGCC	3 cut(s)	34, 94, 326
ApeKI	GCWGC	3 cut(s)	23, 116, 119
Asp700I	GAANNNNTTC	1 cut(s)	165
AspLEI	GCGC	1 cut(s)	23
AsuHPI	GGTGA	1 cut(s)	161
AvaI	CYCGRG	1 cut(s)	86
BanII	GRGCYC	1 cut(s)	83
BbsI	GAAGAC	1 cut(s)	158
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	3 cut(s)	10, 128, 131
BciT130I	CCWGG	1 cut(s)	173
BfrI	CTTAAG	1 cut(s)	269
BisI	GCNGC	4 cut(s)	24, 97, 117, 120
BlsI	GCNGC	4 cut(s)	25, 98, 118, 121
BmcAI	AGTACT	1 cut(s)	285
Bme1390I	CCNGG	1 cut(s)	173
BmeT110I	CYCGRG	1 cut(s)	86
BmgBI	CACGTC	1 cut(s)	196
BmrFI	CCNGG	1 cut(s)	173
BmsI	GCATC	1 cut(s)	62
BpiI	GAAGAC	1 cut(s)	158
BplI	GAGNNNNNCTC	2 cut(s)	123, 155
BpuEI	CTTGAG	1 cut(s)	137
BsaJI	CCNNGG	2 cut(s)	172, 243
Bsc4I	CCNNNNNNNGG	3 cut(s)	178, 244, 249
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	2 cut(s)	172, 243
BseLI	CCNNNNNNNGG	3 cut(s)	178, 244, 249
BseXI	GCAGC	3 cut(s)	10, 128, 131
BshFI	GGCC	3 cut(s)	36, 96, 328
BsiHKAI	GWGCWC	1 cut(s)	141
BsiHKCI	CYCGRG	1 cut(s)	86
BslFI	GGGAC	1 cut(s)	195
BslI	CCNNNNNNNGG	3 cut(s)	178, 244, 249
BsmFI	GGGAC	1 cut(s)	195
BsnI	GGCC	3 cut(s)	36, 96, 328
BsoBI	CYCGRG	1 cut(s)	86
Bsp1286I	GDGCHC	2 cut(s)	83, 141
BspACI	CCGC	2 cut(s)	14, 97
BspANI	GGCC	3 cut(s)	36, 96, 328
BspTI	CTTAAG	1 cut(s)	269
BsrBI	CCGCTC	1 cut(s)	99
BssECI	CCNNGG	2 cut(s)	172, 243
BssT1I	CCWWGG	1 cut(s)	243
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	1 cut(s)	239
BstAFI	CTTAAG	1 cut(s)	269
BstC8I	GCNNGC	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	23
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 20, 102, 116, 145
BstNI	CCWGG	1 cut(s)	173
BstSCI	CCNGG	1 cut(s)	171
BstV1I	GCAGC	3 cut(s)	10, 128, 131
BstV2I	GAAGAC	1 cut(s)	158
BsuRI	GGCC	3 cut(s)	36, 96, 328
BtrI	CACGTC	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	141
CfoI	GCGC	1 cut(s)	23
Csp6I	GTAC	2 cut(s)	240, 284
CviJI	RGCY	6 cut(s)	5, 36, 81, 96, 254, 328
CviKI_1	RGCY	6 cut(s)	5, 36, 81, 96, 254, 328
CviQI	GTAC	2 cut(s)	240, 284
EaeI	YGGCCR	3 cut(s)	34, 94, 326
Eco130I	CCWWGG	1 cut(s)	243
Eco24I	GRGCYC	1 cut(s)	83
Eco88I	CYCGRG	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	171
EcoT14I	CCWWGG	1 cut(s)	243
EcoT38I	GRGCYC	1 cut(s)	83
ErhI	CCWWGG	1 cut(s)	243
FaiI	YATR	4 cut(s)	9, 19, 146, 250
FaqI	GGGAC	1 cut(s)	195
Fnu4HI	GCNGC	4 cut(s)	24, 97, 117, 120
FriOI	GRGCYC	1 cut(s)	83
Fsp4HI	GCNGC	4 cut(s)	24, 97, 117, 120
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	4 cut(s)	24, 97, 117, 120
HaeIII	GGCC	3 cut(s)	36, 96, 328
HhaI	GCGC	1 cut(s)	23
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HinfI	GANTC	1 cut(s)	190
HphI	GGTGA	1 cut(s)	161
HpyAV	CCTTC	2 cut(s)	155, 217
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	2 cut(s)	105, 148
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 20, 102, 116, 145
HpySE526I	ACGT	1 cut(s)	195
HspAI	GCGC	1 cut(s)	21
LpnPI	CCDG	3 cut(s)	158, 164, 185
Lsp1109I	GCAGC	3 cut(s)	10, 128, 131
LweI	GCATC	1 cut(s)	62
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	46
MbiI	CCGCTC	1 cut(s)	99
MboII	GAAGA	2 cut(s)	158, 323
MfeI	CAATTG	1 cut(s)	60
MhlI	GDGCHC	2 cut(s)	83, 141
MluCI	AATT	2 cut(s)	39, 60
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	3 cut(s)	127, 179, 276
MroXI	GAANNNNTTC	1 cut(s)	165
MseI	TTAA	5 cut(s)	75, 231, 270, 288, 334
MslI	CAYNNNNRTG	2 cut(s)	88, 198
MspCI	CTTAAG	1 cut(s)	269
MspR9I	CCNGG	1 cut(s)	173
MunI	CAATTG	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	173
MwoI	GCNNNNNNNGC	5 cut(s)	11, 20, 102, 116, 145
NmeAIII	GCCGAG	1 cut(s)	304
OliI	CACNNNNGTG	1 cut(s)	88
PaeR7I	CTCGAG	1 cut(s)	86
PdmI	GAANNNNTTC	1 cut(s)	165
PfeI	GAWTC	1 cut(s)	190
PflMI	CCANNNNNTGG	1 cut(s)	249
PkrI	GCNGC	4 cut(s)	25, 98, 118, 121
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspXI	VCTCGAGB	1 cut(s)	86
RsaI	GTAC	2 cut(s)	241, 285
RsaNI	GTAC	2 cut(s)	240, 284
RseI	CAYNNNNRTG	2 cut(s)	88, 198
SaqAI	TTAA	5 cut(s)	75, 231, 270, 288, 334
SatI	GCNGC	4 cut(s)	24, 97, 117, 120
ScaI	AGTACT	1 cut(s)	285
ScrFI	CCNGG	1 cut(s)	173
SduI	GDGCHC	2 cut(s)	83, 141
SetI	ASST	5 cut(s)	138, 159, 166, 198, 249
SfaNI	GCATC	1 cut(s)	62
Sfr274I	CTCGAG	1 cut(s)	86
SlaI	CTCGAG	1 cut(s)	86
SmiMI	CAYNNNNRTG	2 cut(s)	88, 198
SmlI	CTYRAG	3 cut(s)	86, 152, 269
SmoI	CTYRAG	3 cut(s)	86, 152, 269
Sse9I	AATT	2 cut(s)	39, 60
SsiI	CCGC	2 cut(s)	14, 97
StyD4I	CCNGG	1 cut(s)	171
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	239
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	1 cut(s)	87
TasI	AATT	2 cut(s)	39, 60
TatI	WGTACW	1 cut(s)	283
TauI	GCSGC	1 cut(s)	99
TfiI	GAWTC	1 cut(s)	190
Tru1I	TTAA	5 cut(s)	75, 231, 270, 288, 334
Tru9I	TTAA	5 cut(s)	75, 231, 270, 288, 334
TseI	GCWGC	3 cut(s)	23, 116, 119
TspDTI	ATGAA	3 cut(s)	24, 225, 324
Van91I	CCANNNNNTGG	1 cut(s)	249
Vha464I	CTTAAG	1 cut(s)	269
XhoI	CTCGAG	1 cut(s)	86
XmnI	GAANNNNTTC	1 cut(s)	165
ZrmI	AGTACT	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.