Prupe.6G108700_v2.0.a1

50S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0005691
Physical Location & Seq
Forward (+)
7753189 .. 7754908
1720 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G108700.1

Sequence Viewer

Length: 384 bp
ATGACGGTTGTGAAGCGGTATGTACTGCGTCTGTTCATATCCTTGAAGTACATTACAGCAAACGTGGTGGACAGAAACAATGGCCGGATTGTTACATCAGCATCTACAGTTGAACATTCAATCAAGGGCTCGCTTGAGTGTGGTCGGTCTTGCAATGCAAAGGCAGCGTCAGTTGTTGGAGAGGTGTTGGCTAAGAGACTCAAGGTGGATGGTCTTGACCAGGGGCAGGGACGAGGGATTCACGTTAATGTAAATAATGAACTTGAGAAGAAGGGTTTTAAGAACCGCACCAAGATTTGGGCCATTGTCAATGCTCTTAAGAACAATGGAGTCAAACTCGTTCTTGATGATAACGATGAAAATACATCTCGACCAAGTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L18p

Protein Analysis

128

Amino Acids

14.0

Weight (kDa)

9.85

Isoelectric Point (pI)

11.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 297
AciI CCGC 2 cut(s) 16, 286
AcoI YGGCCR 1 cut(s) 82
AfaI GTAC 2 cut(s) 24, 50
AfiI CCNNNNNNNGG 2 cut(s) 226, 297
AflII CTTAAG 1 cut(s) 317
AgsI TTSAA 3 cut(s) 46, 113, 120
AjnI CCWGG 1 cut(s) 219
Alw26I GTCTC 1 cut(s) 190
AoxI GGCC 2 cut(s) 82, 300
ApeKI GCWGC 1 cut(s) 164
ArsI GACNNNNNNTTYG 2 cut(s) 152, 184
AspS9I GGNCC 1 cut(s) 300
BanII GRGCYC 1 cut(s) 131
BbvI GCAGC 1 cut(s) 176
BccI CCATC 1 cut(s) 203
BciT130I CCWGG 1 cut(s) 221
BcoDI GTCTC 1 cut(s) 190
BfmI CTRYAG 1 cut(s) 105
BfrI CTTAAG 1 cut(s) 317
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
Bme1390I CCNGG 1 cut(s) 221
BmgT120I GGNCC 1 cut(s) 300
BmrFI CCNGG 1 cut(s) 221
BmsI GCATC 1 cut(s) 110
BplI GAGNNNNNCTC 2 cut(s) 321, 353
BpuEI CTTGAG 3 cut(s) 155, 185, 284
BsaJI CCNNGG 1 cut(s) 220
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 297
Bse3DI GCAATG 1 cut(s) 160
BseBI CCWGG 1 cut(s) 221
BseDI CCNNGG 1 cut(s) 220
BseGI GGATG 1 cut(s) 214
BseLI CCNNNNNNNGG 2 cut(s) 226, 297
BseMI GCAATG 1 cut(s) 160
BseXI GCAGC 1 cut(s) 176
BshFI GGCC 2 cut(s) 84, 302
BsiSI CCGG 1 cut(s) 85
BslFI GGGAC 1 cut(s) 243
BslI CCNNNNNNNGG 2 cut(s) 226, 297
BsmAI GTCTC 1 cut(s) 190
BsmFI GGGAC 1 cut(s) 243
BsnI GGCC 2 cut(s) 84, 302
Bsp1286I GDGCHC 1 cut(s) 131
BspACI CCGC 2 cut(s) 16, 286
BspANI GGCC 2 cut(s) 84, 302
BspTI CTTAAG 1 cut(s) 317
BsrDI GCAATG 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 220
Bst2UI CCWGG 1 cut(s) 221
Bst4CI ACNGT 2 cut(s) 7, 109
BstAFI CTTAAG 1 cut(s) 317
BstC8I GCNNGC 1 cut(s) 131
BstDEI CTNAG 1 cut(s) 192
BstF5I GGATG 1 cut(s) 214
BstMAI GTCTC 1 cut(s) 190
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstNI CCWGG 1 cut(s) 221
BstSCI CCNGG 1 cut(s) 219
BstSFI CTRYAG 1 cut(s) 105
BstV1I GCAGC 1 cut(s) 176
BsuRI GGCC 2 cut(s) 84, 302
BtsCI GGATG 1 cut(s) 214
Cac8I GCNNGC 1 cut(s) 131
Cfr13I GGNCC 1 cut(s) 300
CseI GACGC 2 cut(s) 17, 156
Csp6I GTAC 2 cut(s) 23, 49
CspCI CAANNNNNGTGG 2 cut(s) 48, 83
CviJI RGCY 4 cut(s) 84, 129, 191, 302
CviKI_1 RGCY 4 cut(s) 84, 129, 191, 302
CviQI GTAC 2 cut(s) 23, 49
DdeI CTNAG 1 cut(s) 192
EaeI YGGCCR 1 cut(s) 82
Eco24I GRGCYC 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 219
EcoT38I GRGCYC 1 cut(s) 131
FaiI YATR 2 cut(s) 21, 38
FaqI GGGAC 1 cut(s) 243
Fnu4HI GCNGC 1 cut(s) 165
FokI GGATG 1 cut(s) 221
FriOI GRGCYC 1 cut(s) 131
Fsp4HI GCNGC 1 cut(s) 165
GluI GCNGC 1 cut(s) 165
HaeIII GGCC 2 cut(s) 84, 302
HapII CCGG 1 cut(s) 85
HgaI GACGC 2 cut(s) 17, 156
HinfI GANTC 3 cut(s) 198, 238, 330
HpaII CCGG 1 cut(s) 85
Hpy166II GTNNAC 1 cut(s) 70
Hpy188III TCNNGA 3 cut(s) 215, 344, 369
Hpy8I GTNNAC 1 cut(s) 70
HpyAV CCTTC 1 cut(s) 265
HpyCH4III ACNGT 2 cut(s) 7, 109
HpyCH4IV ACGT 2 cut(s) 63, 243
HpyCH4V TGCA 2 cut(s) 153, 158
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 1 cut(s) 192
HpySE526I ACGT 2 cut(s) 63, 243
LpnPI CCDG 4 cut(s) 98, 206, 212, 233
Lsp1109I GCAGC 1 cut(s) 176
LweI GCATC 1 cut(s) 110
MaeII ACGT 2 cut(s) 63, 243
MaeIII GTNAC 2 cut(s) 91, 377
MboII GAAGA 1 cut(s) 280
MhlI GDGCHC 1 cut(s) 131
MlyI GAGTC 2 cut(s) 192, 339
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 2 cut(s) 175, 227
MseI TTAA 3 cut(s) 246, 279, 318
MslI CAYNNNNRTG 1 cut(s) 246
MspCI CTTAAG 1 cut(s) 317
MspI CCGG 1 cut(s) 85
MspR9I CCNGG 1 cut(s) 221
MvaI CCWGG 1 cut(s) 221
MwoI GCNNNNNNNGC 1 cut(s) 164
PfeI GAWTC 1 cut(s) 238
PflMI CCANNNNNTGG 1 cut(s) 297
PkrI GCNGC 1 cut(s) 166
PleI GAGTC 2 cut(s) 192, 338
PpsI GAGTC 2 cut(s) 192, 338
Psp6I CCWGG 1 cut(s) 219
PspGI CCWGG 1 cut(s) 219
PspPI GGNCC 1 cut(s) 300
RsaI GTAC 2 cut(s) 24, 50
RsaNI GTAC 2 cut(s) 23, 49
RseI CAYNNNNRTG 1 cut(s) 246
SaqAI TTAA 3 cut(s) 246, 279, 318
SatI GCNGC 1 cut(s) 165
Sau96I GGNCC 1 cut(s) 300
SchI GAGTC 2 cut(s) 192, 339
ScrFI CCNGG 1 cut(s) 221
SduI GDGCHC 1 cut(s) 131
SetI ASST 4 cut(s) 66, 186, 207, 246
SfaNI GCATC 1 cut(s) 110
SfcI CTRYAG 1 cut(s) 105
SmiMI CAYNNNNRTG 1 cut(s) 246
SmlI CTYRAG 4 cut(s) 134, 200, 263, 317
SmoI CTYRAG 4 cut(s) 134, 200, 263, 317
SsiI CCGC 2 cut(s) 16, 286
StyD4I CCNGG 1 cut(s) 219
TaaI ACNGT 2 cut(s) 7, 109
TaiI ACGT 2 cut(s) 66, 246
TaqI TCGA 1 cut(s) 370
TaqII GACCGA 1 cut(s) 135
TatI WGTACW 2 cut(s) 22, 48
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 3 cut(s) 246, 279, 318
Tru9I TTAA 3 cut(s) 246, 279, 318
TseI GCWGC 1 cut(s) 164
TspDTI ATGAA 3 cut(s) 25, 273, 372
Van91I CCANNNNNTGG 1 cut(s) 297
Vha464I CTTAAG 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.