Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005691

Physical Location & Seq

Genomic Coordinates Reverse (-)

67743784 .. 67745619

Gene Structure 1836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG440600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGTTCGGATTGGGTATAAACCTGACTCAACCCAAACAATACAGGCGTGCACGAGCTTGAGGCCTGTGGTTGTAGCCCATCGATTTTGGACTGCAAATACTACTGTATATTGGTGCCCGGAAAGCATAAAGCAGAGATGCGTTGATGACGTCTTGCGTCTGACGCTTGAGGAAGTTCATCATCATCAGACTGCATATCAAATTCCGATCAACAACTTGGAGGTATGGTTGAGTGGCTTAAGGCATTGGTTTGCTAAATCGGCATACAAGAAGATTGTATCGTGGCTTATGAAGCGGTATGCACTGCGGTTGTTCATATCATTCAAGTACATCACAGCAAACGTTGTTCACAGAAATATTGGCCGAATTGTTGTAACAGCATCTACAATTGAACATTCTGTTAAGGGCTCACTCGAGTGTGGCCGCTCTTGCAAAGCAAAGGCAGCAGCAGTTGTTGAAGTGGTGCTCGCTATGCAACTCAATGTGGAAGGTCTTGACCAGGGACAGGGACGAGGGATTCACGTCAATGTAAATAATGAGGTTGAGAAGAAGGGTTTTAAGAACCGTACCAAGGTATGGGCTATTGTCAATGCTCTTAAGAACAATGAAGTACTTAAACTCATTCTTGATGACGATGAAGAAAATAGTTCCCGGCCAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribosomal_L18p

Protein Analysis

220

Amino Acids

25.02

Weight (kDa)

9.49

Isoelectric Point (pI)

32.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45020 AT3G45020 AT3G45020 AT3G45020
fragaria_vesca	FvH4_3g31090 FvH4_3g31090 FvH4_3g31090 FvH4_3g31090
malus_domestica	MD00G1033500.v1.1
prunus_persica	Prupe.6G108700_v2.0.a1
pyrus_communis	pycom11g11870
rosa_chinensis	RchiOBHm_Chr4g0444611 RchiOBHm_Chr5g0057731
rosa_laevigata	RLG00000005818 RLG00000035172
rosa_multiflora	Rmu_sc0001849.1_g000011
rosa_roxburghii	Rroxscaffold_1G00022760
rosa_rugosa	Rorug05G0309100 Rorug05G0309100 Rorug05G0309100
rosa_samantha	Rh4AG414300 Rh4BG425900 Rh4CG440600 Rh4DG421600 Rh5BG388500 Rh5CG412900 Rh5DG402800
rosa_wichuraiana	Rw5G035590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	153
AccB1I	GGYRCC	1 cut(s)	114
AccB7I	CCANNNNNTGG	1 cut(s)	576
AccBSI	CCGCTC	1 cut(s)	426
AciI	CCGC	3 cut(s)	295, 307, 424
AclI	AACGTT	1 cut(s)	342
AcoI	YGGCCR	3 cut(s)	361, 421, 653
AcsI	RAATTY	1 cut(s)	201
AcyI	GRCGYC	1 cut(s)	150
AfaI	GTAC	3 cut(s)	329, 568, 612
AfiI	CCNNNNNNNGG	3 cut(s)	505, 571, 576
AflII	CTTAAG	2 cut(s)	238, 596
AgsI	TTSAA	3 cut(s)	325, 392, 458
AjiI	CACGTC	1 cut(s)	523
AjnI	CCWGG	1 cut(s)	498
AleI	CACNNNNGTG	1 cut(s)	415
AluBI	AGCT	1 cut(s)	57
AluI	AGCT	1 cut(s)	57
Alw21I	GWGCWC	2 cut(s)	53, 468
Alw44I	GTGCAC	1 cut(s)	49
Ama87I	CYCGRG	1 cut(s)	413
AoxI	GGCC	4 cut(s)	62, 361, 421, 653
ApaLI	GTGCAC	1 cut(s)	49
ApeKI	GCWGC	2 cut(s)	443, 446
ApoI	RAATTY	1 cut(s)	201
AsuC2I	CCSGG	2 cut(s)	119, 652
AvaI	CYCGRG	1 cut(s)	413
BaeGI	GKGCMC	2 cut(s)	53, 119
BanI	GGYRCC	1 cut(s)	114
BanII	GRGCYC	1 cut(s)	410
BauI	CACGAG	1 cut(s)	52
Bbv12I	GWGCWC	2 cut(s)	53, 468
BbvI	GCAGC	2 cut(s)	455, 458
BccI	CCATC	1 cut(s)	87
BciT130I	CCWGG	1 cut(s)	500
BcnI	CCSGG	2 cut(s)	119, 652
BfrI	CTTAAG	2 cut(s)	238, 596
BisI	GCNGC	3 cut(s)	424, 444, 447
BlsI	GCNGC	3 cut(s)	425, 445, 448
BmcAI	AGTACT	1 cut(s)	612
Bme1390I	CCNGG	3 cut(s)	119, 500, 652
BmeT110I	CYCGRG	1 cut(s)	413
BmgBI	CACGTC	1 cut(s)	523
BmiI	GGNNCC	1 cut(s)	116
BmrFI	CCNGG	3 cut(s)	119, 500, 652
BmsI	GCATC	2 cut(s)	128, 389
BpuEI	CTTGAG	2 cut(s)	79, 188
BpuMI	CCSGG	2 cut(s)	119, 652
Bsa29I	ATCGAT	1 cut(s)	82
BsaHI	GRCGYC	1 cut(s)	150
BsaJI	CCNNGG	2 cut(s)	499, 570
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	3 cut(s)	505, 571, 576
BseBI	CCWGG	1 cut(s)	500
BseCI	ATCGAT	1 cut(s)	82
BseDI	CCNNGG	2 cut(s)	499, 570
BseLI	CCNNNNNNNGG	3 cut(s)	505, 571, 576
BseSI	GKGCMC	2 cut(s)	53, 119
BseXI	GCAGC	2 cut(s)	455, 458
BshFI	GGCC	4 cut(s)	64, 363, 423, 655
BshNI	GGYRCC	1 cut(s)	114
BshVI	ATCGAT	1 cut(s)	82
BsiHKAI	GWGCWC	2 cut(s)	53, 468
BsiHKCI	CYCGRG	1 cut(s)	413
BsiSI	CCGG	2 cut(s)	119, 652
BslFI	GGGAC	2 cut(s)	516, 522
BslI	CCNNNNNNNGG	3 cut(s)	505, 571, 576
BsmFI	GGGAC	2 cut(s)	516, 522
BsnI	GGCC	4 cut(s)	64, 363, 423, 655
BsoBI	CYCGRG	1 cut(s)	413
Bsp1286I	GDGCHC	4 cut(s)	53, 119, 410, 468
Bsp143I	GATC	1 cut(s)	207
BspACI	CCGC	3 cut(s)	295, 307, 424
BspANI	GGCC	4 cut(s)	64, 363, 423, 655
BspDI	ATCGAT	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	116
BspT107I	GGYRCC	1 cut(s)	114
BspTI	CTTAAG	2 cut(s)	238, 596
BsrBI	CCGCTC	1 cut(s)	426
BssECI	CCNNGG	2 cut(s)	499, 570
BssMI	GATC	1 cut(s)	207
BssNI	GRCGYC	1 cut(s)	150
BssSI	CACGAG	1 cut(s)	52
BssT1I	CCWWGG	1 cut(s)	570
Bst2BI	CACGAG	1 cut(s)	52
Bst2UI	CCWGG	1 cut(s)	500
Bst4CI	ACNGT	2 cut(s)	106, 566
BstACI	GRCGYC	1 cut(s)	150
BstAFI	CTTAAG	2 cut(s)	238, 596
BstC8I	GCNNGC	2 cut(s)	49, 468
BstKTI	GATC	1 cut(s)	210
BstMBI	GATC	1 cut(s)	207
BstMWI	GCNNNNNNNGC	7 cut(s)	123, 163, 260, 292, 429, 443, 472
BstNI	CCWGG	1 cut(s)	500
BstSCI	CCNGG	3 cut(s)	117, 498, 650
BstSLI	GKGCMC	2 cut(s)	53, 119
BstV1I	GCAGC	2 cut(s)	455, 458
Bsu15I	ATCGAT	1 cut(s)	82
BsuRI	GGCC	4 cut(s)	64, 363, 423, 655
BsuTUI	ATCGAT	1 cut(s)	82
BtrI	CACGTC	1 cut(s)	523
BtsI	GCAGTG	1 cut(s)	302
BtsIMutI	CAGTG	1 cut(s)	302
Cac8I	GCNNGC	2 cut(s)	49, 468
ClaI	ATCGAT	1 cut(s)	82
CseI	GACGC	2 cut(s)	146, 172
Csp6I	GTAC	3 cut(s)	328, 567, 611
CviQI	GTAC	3 cut(s)	328, 567, 611
DpnI	GATC	1 cut(s)	209
DpnII	GATC	1 cut(s)	207
EaeI	YGGCCR	3 cut(s)	361, 421, 653
Eco130I	CCWWGG	1 cut(s)	570
Eco147I	AGGCCT	1 cut(s)	64
Eco24I	GRGCYC	1 cut(s)	410
Eco88I	CYCGRG	1 cut(s)	413
EcoRII	CCWGG	1 cut(s)	498
EcoT14I	CCWWGG	1 cut(s)	570
EcoT38I	GRGCYC	1 cut(s)	410
ErhI	CCWWGG	1 cut(s)	570
FaqI	GGGAC	2 cut(s)	516, 522
Fnu4HI	GCNGC	3 cut(s)	424, 444, 447
FriOI	GRGCYC	1 cut(s)	410
Fsp4HI	GCNGC	3 cut(s)	424, 444, 447
GluI	GCNGC	3 cut(s)	424, 444, 447
HaeIII	GGCC	4 cut(s)	64, 363, 423, 655
HapII	CCGG	2 cut(s)	119, 652
HgaI	GACGC	2 cut(s)	146, 172
Hin1I	GRCGYC	1 cut(s)	150
HinfI	GANTC	2 cut(s)	26, 517
HpaII	CCGG	2 cut(s)	119, 652
Hpy166II	GTNNAC	2 cut(s)	51, 349
Hpy188I	TCNGA	4 cut(s)	9, 162, 189, 207
Hpy188III	TCNNGA	2 cut(s)	494, 626
Hpy8I	GTNNAC	2 cut(s)	51, 349
HpyAV	CCTTC	2 cut(s)	482, 544
HpyCH4III	ACNGT	2 cut(s)	106, 566
HpyCH4IV	ACGT	3 cut(s)	150, 342, 522
HpyCH4V	TGCA	6 cut(s)	51, 95, 194, 302, 432, 475
HpyF10VI	GCNNNNNNNGC	7 cut(s)	123, 163, 260, 292, 429, 443, 472
HpySE526I	ACGT	3 cut(s)	150, 342, 522
Hsp92I	GRCGYC	1 cut(s)	150
Kzo9I	GATC	1 cut(s)	207
LpnPI	CCDG	7 cut(s)	29, 36, 78, 132, 485, 491, 512
Lsp1109I	GCAGC	2 cut(s)	455, 458
LweI	GCATC	2 cut(s)	128, 389
MaeII	ACGT	3 cut(s)	150, 342, 522
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	1 cut(s)	209
MbiI	CCGCTC	1 cut(s)	426
MboI	GATC	1 cut(s)	207
MboII	GAAGA	3 cut(s)	283, 559, 650
MfeI	CAATTG	1 cut(s)	387
MhlI	GDGCHC	4 cut(s)	53, 119, 410, 468
MluCI	AATT	3 cut(s)	201, 366, 387
MlyI	GAGTC	1 cut(s)	20
MnlI	CCTC	5 cut(s)	54, 163, 214, 506, 532
MseI	TTAA	6 cut(s)	239, 402, 558, 597, 615, 661
MslI	CAYNNNNRTG	2 cut(s)	415, 525
MspCI	CTTAAG	2 cut(s)	238, 596
MspI	CCGG	2 cut(s)	119, 652
MspR9I	CCNGG	3 cut(s)	119, 500, 652
MunI	CAATTG	1 cut(s)	387
MvaI	CCWGG	1 cut(s)	500
MwoI	GCNNNNNNNGC	7 cut(s)	123, 163, 260, 292, 429, 443, 472
NciI	CCSGG	2 cut(s)	119, 652
NdeII	GATC	1 cut(s)	207
NlaIV	GGNNCC	1 cut(s)	116
OliI	CACNNNNGTG	1 cut(s)	415
PaeR7I	CTCGAG	1 cut(s)	413
PceI	AGGCCT	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	517
PflMI	CCANNNNNTGG	1 cut(s)	576
PkrI	GCNGC	3 cut(s)	425, 445, 448
PleI	GAGTC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	20
Psp1406I	AACGTT	1 cut(s)	342
Psp6I	CCWGG	1 cut(s)	498
PspGI	CCWGG	1 cut(s)	498
PspN4I	GGNNCC	1 cut(s)	116
PspXI	VCTCGAGB	1 cut(s)	413
RsaI	GTAC	3 cut(s)	329, 568, 612
RsaNI	GTAC	3 cut(s)	328, 567, 611
RseI	CAYNNNNRTG	2 cut(s)	415, 525
SaqAI	TTAA	6 cut(s)	239, 402, 558, 597, 615, 661
SatI	GCNGC	3 cut(s)	424, 444, 447
Sau3AI	GATC	1 cut(s)	207
ScaI	AGTACT	1 cut(s)	612
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	3 cut(s)	119, 500, 652
SduI	GDGCHC	4 cut(s)	53, 119, 410, 468
SetI	ASST	9 cut(s)	25, 59, 153, 225, 345, 493, 525, 543, 576
SfaNI	GCATC	2 cut(s)	128, 389
Sfr274I	CTCGAG	1 cut(s)	413
SlaI	CTCGAG	1 cut(s)	413
SmiMI	CAYNNNNRTG	2 cut(s)	415, 525
SmlI	CTYRAG	5 cut(s)	58, 167, 238, 413, 596
SmoI	CTYRAG	5 cut(s)	58, 167, 238, 413, 596
Sse9I	AATT	3 cut(s)	201, 366, 387
SseBI	AGGCCT	1 cut(s)	64
SsiI	CCGC	3 cut(s)	295, 307, 424
SspI	AATATT	1 cut(s)	358
StuI	AGGCCT	1 cut(s)	64
StyD4I	CCNGG	3 cut(s)	117, 498, 650
StyI	CCWWGG	1 cut(s)	570
TaaI	ACNGT	2 cut(s)	106, 566
TaiI	ACGT	3 cut(s)	153, 345, 525
TaqI	TCGA	2 cut(s)	82, 414
TasI	AATT	3 cut(s)	201, 366, 387
TatI	WGTACW	2 cut(s)	327, 610
TauI	GCSGC	1 cut(s)	426
TfiI	GAWTC	1 cut(s)	517
Tru1I	TTAA	6 cut(s)	239, 402, 558, 597, 615, 661
Tru9I	TTAA	6 cut(s)	239, 402, 558, 597, 615, 661
TscAI	CASTG	1 cut(s)	309
TseI	GCWGC	2 cut(s)	443, 446
TspDTI	ATGAA	5 cut(s)	167, 304, 305, 621, 651
TspRI	CASTG	1 cut(s)	309
Van91I	CCANNNNNTGG	1 cut(s)	576
Vha464I	CTTAAG	2 cut(s)	238, 596
VneI	GTGCAC	1 cut(s)	49
XapI	RAATTY	1 cut(s)	201
XhoI	CTCGAG	1 cut(s)	413
ZraI	GACGTC	1 cut(s)	151
ZrmI	AGTACT	1 cut(s)	612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.