AT3G45300

Acyl-CoA dehydrogenase, C-terminal domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
16621452 .. 16625043
3592 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G45300.1

Sequence Viewer

Length: 1230 bp
ATGCAGAGGTTTTTCTCCGCCAGATCGATTCTCGGTTACGCCGTCAAGACGCGGAGGAGGTCTTTCTCTTCTCGTTCTTCGTCTCTCCTATTCGACGACACTCAGTTACAGTTTAAAGAAAGTGTATCCAAGTTTGCGCAAGATAATATCGCTCCTCATGCAGAAAGAATTGATAAAACTAATTCATTTCCAAAGGATGTAAACTTATGGAAGCTAATGGGTGAGTTTAATCTCCATGGAATCACTGCGCCAGAGGAATATGGAGGGCTAGGTCTTGGTTACTTGTATCATTGTATTGCAATGGAGGAAATCAGTCGGGCCTCGGGTTCAGTTGCTTTGTCTTATGGTGCTCATTCCAACCTTTGCATCAATCAATTGGTGAGGAATGGAACTGCAGCCCAAAAGGAAAAGTATTTGCCAAAGCTTATCAGTGGAGAGCATGTTGGTGCTCTTGCAATGAGTGAACCTAATGCTGGTTCAGATGTTGTTGGCATGAAATGCAAGGCTGAGAAGGTAGATGGTGGTTATATACTAAATGGCAACAAGATGTGGTGCACTAATGGTCCATCTGCTGAAACACTGGTTGTTTACGCGAAAACTGATACAAAAGCAGGTTCCAAAGGAATCACGGCTTTCATCATAGAGAAAGGAATGACCGGATTCAGTACTGCTCAGAAATTGGACAAACTAGGAATGCGGGGAAGCGATACGTGTGAGCTTGTTTTTGAGAATTGCTTCGTTCCAGAGGAAAATATTCTAGACAAGGAAGGAAAAGGAGTGTATGTTCTGATGTCAGGTCTGGATTTGGAGAGACTTGTTTTAGCAGCTGGGCCCTTAGGGATCATGCAGGCATGCCTCGACAATGTTCTTCCCTATATTCGCCAGAGAGAACAATTTGGTCGTCCAGTTGGGGAATTTCAGTTTATACAGGGTAAAGTTGCTGATATGTACACTGCATTACAATCTTCAAGGTCATACGTTTACTCTGTTGCGAGGGACTGTGACAATGGGAAAGTTGACCCAAAGGACTGCGCCGGAACTATTCTTTGTGCGGCCGAGAGAGCAACGCAGGTCGCTTTACAGGCGATACAATGTTTAGGCGGAAATGGATACATAAACGAATATGCAACAGGACGCCTTCTAAGAGATGCAAAGCTATATGAAATCGGTGCAGGGACAAGCGAGATCAGAAGGATTGTCATCGGTCGCGAGCTTTTCAAAGAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling

Protein Analysis

409

Amino Acids

44.77

Weight (kDa)

7.47

Isoelectric Point (pI)

37.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyl-CoA_dh_N PF02771 33 - 146 2.3e-39 Acyl-CoA dehydrogenase, N-terminal domain
Acyl-CoA_dh_M PF02770 150 - 245 3.2e-25 Acyl-CoA dehydrogenase, middle domain
Acyl-CoA_dh_1 PF00441 257 - 405 1.3e-43 Acyl-CoA dehydrogenase, C-terminal domain
Acyl-CoA_dh_2 PF08028 272 - 388 9.8e-11 Acyl-CoA dehydrogenase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 138
Acc36I ACCTGC 2 cut(s) 602, 1060
AccII CGCG 3 cut(s) 52, 593, 1209
AciI CCGC 5 cut(s) 18, 52, 697, 1052, 1101
AclWI GGATC 1 cut(s) 848
AcoI YGGCCR 1 cut(s) 1053
AcsI RAATTY 1 cut(s) 914
AcyI GRCGYC 1 cut(s) 1135
AfaI GTAC 2 cut(s) 667, 950
AfiI CCNNNNNNNGG 1 cut(s) 473
AflIII ACRYGT 1 cut(s) 710
AgsI TTSAA 2 cut(s) 969, 1219
AloI GAACNNNNNNTCC 2 cut(s) 768, 800
AluBI AGCT 6 cut(s) 214, 424, 718, 827, 1156, 1213
AluI AGCT 6 cut(s) 214, 424, 718, 827, 1156, 1213
Alw21I GWGCWC 3 cut(s) 352, 451, 557
Alw26I GTCTC 2 cut(s) 87, 805
Alw44I GTGCAC 1 cut(s) 553
AlwI GGATC 1 cut(s) 848
Ama87I CYCGRG 1 cut(s) 322
AoxI GGCC 3 cut(s) 318, 830, 1053
ApaI GGGCCC 1 cut(s) 834
ApaLI GTGCAC 1 cut(s) 553
ApeKI GCWGC 2 cut(s) 395, 824
ApoI RAATTY 1 cut(s) 914
Asp700I GAANNNNTTC 2 cut(s) 734, 753
AspLEI GCGC 3 cut(s) 139, 250, 1034
AspS9I GGNCC 4 cut(s) 318, 563, 830, 831
AsuHPI GGTGA 2 cut(s) 233, 391
AvaI CYCGRG 1 cut(s) 322
AvaII GGWCC 1 cut(s) 563
AxyI CCTNAGG 1 cut(s) 835
BaeGI GKGCMC 2 cut(s) 557, 834
BanII GRGCYC 1 cut(s) 834
Bbv12I GWGCWC 3 cut(s) 352, 451, 557
BbvI GCAGC 2 cut(s) 407, 836
BccI CCATC 2 cut(s) 512, 574
BceAI ACGGC 2 cut(s) 26, 645
BciVI GTATCC 2 cut(s) 136, 1103
BcoDI GTCTC 2 cut(s) 87, 805
BfaI CTAG 3 cut(s) 269, 689, 758
BfmI CTRYAG 1 cut(s) 393
BfuAI ACCTGC 2 cut(s) 602, 1060
BfuI GTATCC 2 cut(s) 136, 1103
BisI GCNGC 3 cut(s) 396, 825, 1053
BlsI GCNGC 3 cut(s) 397, 826, 1054
BmcAI AGTACT 1 cut(s) 667
Bme18I GGWCC 1 cut(s) 563
BmeT110I CYCGRG 1 cut(s) 322
BmgT120I GGNCC 4 cut(s) 318, 563, 830, 831
BmiI GGNNCC 2 cut(s) 616, 832
BmsI GCATC 2 cut(s) 375, 1138
Bsa29I ATCGAT 1 cut(s) 26
BsaAI YACGTR 1 cut(s) 711
BsaBI GATNNNNATC 1 cut(s) 1199
BsaHI GRCGYC 1 cut(s) 1135
BsaJI CCNNGG 2 cut(s) 235, 321
BsaWI WCCGGW 1 cut(s) 656
BsaXI ACNNNNNCTCC 4 cut(s) 426, 456, 768, 798
Bsc4I CCNNNNNNNGG 1 cut(s) 473
Bse1I ACTGG 2 cut(s) 585, 905
Bse21I CCTNAGG 1 cut(s) 835
Bse3DI GCAATG 2 cut(s) 306, 462
Bse8I GATNNNNATC 1 cut(s) 1199
BseCI ATCGAT 1 cut(s) 26
BseDI CCNNGG 2 cut(s) 235, 321
BseGI GGATG 1 cut(s) 202
BseJI GATNNNNATC 1 cut(s) 1199
BseLI CCNNNNNNNGG 1 cut(s) 473
BseMI GCAATG 2 cut(s) 306, 462
BseMII CTCAG 3 cut(s) 116, 498, 686
BseNI ACTGG 2 cut(s) 585, 905
BseRI GAGGAG 2 cut(s) 70, 144
BseSI GKGCMC 2 cut(s) 557, 834
BseX3I CGGCCG 1 cut(s) 1053
BseXI GCAGC 2 cut(s) 407, 836
BseYI CCCAGC 1 cut(s) 827
BsgI GTGCAG 1 cut(s) 1191
Bsh1236I CGCG 3 cut(s) 52, 593, 1209
Bsh1285I CGRYCG 2 cut(s) 1056, 1207
BshFI GGCC 3 cut(s) 320, 832, 1055
BshVI ATCGAT 1 cut(s) 26
BsiEI CGRYCG 2 cut(s) 1056, 1207
BsiHKAI GWGCWC 3 cut(s) 352, 451, 557
BsiHKCI CYCGRG 1 cut(s) 322
BsiSI CCGG 2 cut(s) 657, 1035
BslFI GGGAC 2 cut(s) 1010, 1189
BslI CCNNNNNNNGG 1 cut(s) 473
BsmAI GTCTC 2 cut(s) 87, 805
BsmBI CGTCTC 1 cut(s) 87
BsmFI GGGAC 2 cut(s) 1010, 1189
BsmI GAATGC 1 cut(s) 699
BsnI GGCC 3 cut(s) 320, 832, 1055
BsoBI CYCGRG 1 cut(s) 322
Bsp120I GGGCCC 1 cut(s) 830
Bsp1286I GDGCHC 4 cut(s) 352, 451, 557, 834
Bsp1407I TGTACA 1 cut(s) 948
Bsp143I GATC 3 cut(s) 23, 840, 1185
Bsp19I CCATGG 1 cut(s) 235
Bsp68I TCGCGA 1 cut(s) 1209
BspACI CCGC 5 cut(s) 18, 52, 697, 1052, 1101
BspANI GGCC 3 cut(s) 320, 832, 1055
BspCNI CTCAG 3 cut(s) 115, 499, 685
BspDI ATCGAT 1 cut(s) 26
BspFNI CGCG 3 cut(s) 52, 593, 1209
BspLI GGNNCC 2 cut(s) 616, 832
BspMAI CTGCAG 1 cut(s) 397
BspMI ACCTGC 2 cut(s) 602, 1060
BspPI GGATC 1 cut(s) 848
BsrDI GCAATG 2 cut(s) 306, 462
BsrGI TGTACA 1 cut(s) 948
BsrI ACTGG 2 cut(s) 585, 905
BssECI CCNNGG 2 cut(s) 235, 321
BssMI GATC 3 cut(s) 23, 840, 1185
BssNI GRCGYC 1 cut(s) 1135
BssT1I CCWWGG 1 cut(s) 235
Bst4CI ACNGT 2 cut(s) 111, 1001
Bst6I CTCTTC 1 cut(s) 73
BstACI GRCGYC 1 cut(s) 1135
BstAPI GCANNNNNTGC 1 cut(s) 498
BstAUI TGTACA 1 cut(s) 948
BstBAI YACGTR 1 cut(s) 711
BstC8I GCNNGC 3 cut(s) 849, 853, 1211
BstDEI CTNAG 5 cut(s) 102, 507, 672, 835, 1142
BstDSI CCRYGG 1 cut(s) 235
BstF5I GGATG 1 cut(s) 202
BstFNI CGCG 3 cut(s) 52, 593, 1209
BstHHI GCGC 3 cut(s) 139, 250, 1034
BstKTI GATC 3 cut(s) 26, 843, 1188
BstMAI GTCTC 2 cut(s) 87, 805
BstMBI GATC 3 cut(s) 23, 840, 1185
BstMCI CGRYCG 2 cut(s) 1056, 1207
BstMWI GCNNNNNNNGC 4 cut(s) 158, 498, 1061, 1082
BstNSI RCATGY 2 cut(s) 443, 855
BstSFI CTRYAG 1 cut(s) 393
BstSLI GKGCMC 2 cut(s) 557, 834
BstUI CGCG 3 cut(s) 52, 593, 1209
BstV1I GCAGC 2 cut(s) 407, 836
BstZI CGGCCG 1 cut(s) 1053
Bsu15I ATCGAT 1 cut(s) 26
Bsu36I CCTNAGG 1 cut(s) 835
BsuI GTATCC 2 cut(s) 136, 1103
BsuRI GGCC 3 cut(s) 320, 832, 1055
BsuTUI ATCGAT 1 cut(s) 26
BtgI CCRYGG 1 cut(s) 235
BtsCI GGATG 1 cut(s) 202
BtsI GCAGTG 2 cut(s) 243, 951
BtsIMutI CAGTG 4 cut(s) 243, 436, 578, 951
BtuMI TCGCGA 1 cut(s) 1209
BveI ACCTGC 2 cut(s) 602, 1060
Cac8I GCNNGC 3 cut(s) 849, 853, 1211
CfoI GCGC 3 cut(s) 139, 250, 1034
Cfr13I GGNCC 4 cut(s) 318, 563, 830, 831
ClaI ATCGAT 1 cut(s) 26
CseI GACGC 2 cut(s) 58, 1143
Csp6I GTAC 2 cut(s) 666, 949
CviAII CATG 6 cut(s) 158, 236, 440, 493, 844, 852
CviQI GTAC 2 cut(s) 666, 949
DdeI CTNAG 5 cut(s) 102, 507, 672, 835, 1142
DpnI GATC 3 cut(s) 25, 842, 1187
DpnII GATC 3 cut(s) 23, 840, 1185
DraI TTTAAA 1 cut(s) 115
EaeI YGGCCR 1 cut(s) 1053
EagI CGGCCG 1 cut(s) 1053
Eam1104I CTCTTC 1 cut(s) 73
EarI CTCTTC 1 cut(s) 73
EciI GGCGGA 2 cut(s) 7, 1116
EclXI CGGCCG 1 cut(s) 1053
Eco130I CCWWGG 1 cut(s) 235
Eco24I GRGCYC 1 cut(s) 834
Eco47I GGWCC 1 cut(s) 563
Eco52I CGGCCG 1 cut(s) 1053
Eco81I CCTNAGG 1 cut(s) 835
Eco88I CYCGRG 1 cut(s) 322
EcoO109I RGGNCCY 1 cut(s) 831
EcoT14I CCWWGG 1 cut(s) 235
EcoT38I GRGCYC 1 cut(s) 834
ErhI CCWWGG 1 cut(s) 235
Esp3I CGTCTC 1 cut(s) 87
FaeI CATG 6 cut(s) 161, 239, 443, 496, 847, 855
FaqI GGGAC 2 cut(s) 1010, 1189
FatI CATG 6 cut(s) 157, 235, 439, 492, 843, 851
FauI CCCGC 1 cut(s) 690
Fnu4HI GCNGC 3 cut(s) 396, 825, 1053
FokI GGATG 1 cut(s) 209
FriOI GRGCYC 1 cut(s) 834
Fsp4HI GCNGC 3 cut(s) 396, 825, 1053
FspBI CTAG 3 cut(s) 269, 689, 758
FspI TGCGCA 1 cut(s) 138
GlaI GCGC 3 cut(s) 138, 249, 1033
GluI GCNGC 3 cut(s) 396, 825, 1053
GsaI CCCAGC 1 cut(s) 831
HaeIII GGCC 3 cut(s) 320, 832, 1055
HapII CCGG 2 cut(s) 657, 1035
HgaI GACGC 2 cut(s) 58, 1143
HhaI GCGC 3 cut(s) 139, 250, 1034
Hin1I GRCGYC 1 cut(s) 1135
Hin1II CATG 6 cut(s) 161, 239, 443, 496, 847, 855
Hin6I GCGC 3 cut(s) 137, 248, 1032
HinP1I GCGC 3 cut(s) 137, 248, 1032
HincII GTYRAC 1 cut(s) 1018
HindII GTYRAC 1 cut(s) 1018
HindIII AAGCTT 1 cut(s) 422
HinfI GANTC 4 cut(s) 28, 240, 624, 660
HpaII CCGG 2 cut(s) 657, 1035
HphI GGTGA 2 cut(s) 233, 391
Hpy166II GTNNAC 7 cut(s) 202, 464, 555, 589, 951, 982, 1018
Hpy188I TCNGA 4 cut(s) 481, 675, 789, 1190
Hpy188III TCNNGA 5 cut(s) 46, 743, 758, 800, 1208
Hpy8I GTNNAC 7 cut(s) 202, 464, 555, 589, 951, 982, 1018
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 4 cut(s) 505, 761, 1148, 1185
HpyCH4III ACNGT 2 cut(s) 111, 1001
HpyCH4IV ACGT 2 cut(s) 710, 978
HpyF10VI GCNNNNNNNGC 4 cut(s) 158, 498, 1061, 1082
HpyF3I CTNAG 5 cut(s) 102, 507, 672, 835, 1142
HpySE526I ACGT 2 cut(s) 710, 978
Hsp92I GRCGYC 1 cut(s) 1135
Hsp92II CATG 6 cut(s) 161, 239, 443, 496, 847, 855
HspAI GCGC 3 cut(s) 137, 248, 1032
Kzo9I GATC 3 cut(s) 23, 840, 1185
LmnI GCTCC 1 cut(s) 157
Lsp1109I GCAGC 2 cut(s) 407, 836
LweI GCATC 2 cut(s) 375, 1138
MaeI CTAG 3 cut(s) 269, 689, 758
MaeII ACGT 2 cut(s) 710, 978
MaeIII GTNAC 4 cut(s) 35, 105, 278, 1001
MalI GATC 3 cut(s) 25, 842, 1187
MboI GATC 3 cut(s) 23, 840, 1185
MboII GAAGA 4 cut(s) 60, 69, 860, 957
MfeI CAATTG 1 cut(s) 374
MhlI GDGCHC 4 cut(s) 352, 451, 557, 834
MluCI AATT 7 cut(s) 168, 181, 374, 677, 730, 893, 914
MmeI TCCRAC 1 cut(s) 381
MroXI GAANNNNTTC 2 cut(s) 734, 753
MseI TTAA 2 cut(s) 114, 228
MslI CAYNNNNRTG 1 cut(s) 444
MspA1I CMGCKG 1 cut(s) 827
MspI CCGG 2 cut(s) 657, 1035
MunI CAATTG 1 cut(s) 374
Mva1269I GAATGC 1 cut(s) 699
MvnI CGCG 3 cut(s) 52, 593, 1209
MwoI GCNNNNNNNGC 4 cut(s) 158, 498, 1061, 1082
NcoI CCATGG 1 cut(s) 235
NdeII GATC 3 cut(s) 23, 840, 1185
NlaIII CATG 6 cut(s) 161, 239, 443, 496, 847, 855
NlaIV GGNNCC 2 cut(s) 616, 832
NmeAIII GCCGAG 1 cut(s) 1081
NmuCI GTSAC 1 cut(s) 1001
NruI TCGCGA 1 cut(s) 1209
NsbI TGCGCA 1 cut(s) 138
NspI RCATGY 2 cut(s) 443, 855
PaeI GCATGC 1 cut(s) 855
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PctI GAATGC 1 cut(s) 699
PdmI GAANNNNTTC 2 cut(s) 734, 753
PfeI GAWTC 4 cut(s) 28, 240, 624, 660
PkrI GCNGC 3 cut(s) 397, 826, 1054
Ppu21I YACGTR 1 cut(s) 711
PspFI CCCAGC 1 cut(s) 827
PspN4I GGNNCC 2 cut(s) 616, 832
PspOMI GGGCCC 1 cut(s) 830
PspPI GGNCC 4 cut(s) 318, 563, 830, 831
PstI CTGCAG 1 cut(s) 397
PvuII CAGCTG 1 cut(s) 827
RruI TCGCGA 1 cut(s) 1209
RsaI GTAC 2 cut(s) 667, 950
RsaNI GTAC 2 cut(s) 666, 949
RseI CAYNNNNRTG 1 cut(s) 444
SaqAI TTAA 2 cut(s) 114, 228
SatI GCNGC 3 cut(s) 396, 825, 1053
Sau3AI GATC 3 cut(s) 23, 840, 1185
Sau96I GGNCC 4 cut(s) 318, 563, 830, 831
ScaI AGTACT 1 cut(s) 667
SduI GDGCHC 4 cut(s) 352, 451, 557, 834
SfaNI GCATC 2 cut(s) 375, 1138
SfcI CTRYAG 1 cut(s) 393
SinI GGWCC 1 cut(s) 563
SmiMI CAYNNNNRTG 1 cut(s) 444
SphI GCATGC 1 cut(s) 855
Sse9I AATT 7 cut(s) 168, 181, 374, 677, 730, 893, 914
SsiI CCGC 5 cut(s) 18, 52, 697, 1052, 1101
SspI AATATT 1 cut(s) 754
SspMI CTAG 3 cut(s) 269, 689, 758
StyI CCWWGG 1 cut(s) 235
TaaI ACNGT 2 cut(s) 111, 1001
TaiI ACGT 2 cut(s) 713, 981
TaqI TCGA 3 cut(s) 26, 93, 858
TaqII GACCGA 1 cut(s) 1193
TasI AATT 7 cut(s) 168, 181, 374, 677, 730, 893, 914
TatI WGTACW 2 cut(s) 665, 948
TauI GCSGC 1 cut(s) 1055
TfiI GAWTC 4 cut(s) 28, 240, 624, 660
Tru1I TTAA 2 cut(s) 114, 228
Tru9I TTAA 2 cut(s) 114, 228
TscAI CASTG 4 cut(s) 250, 436, 585, 958
TseFI GTSAC 1 cut(s) 1001
TseI GCWGC 2 cut(s) 395, 824
Tsp45I GTSAC 1 cut(s) 1001
TspDTI ATGAA 4 cut(s) 174, 509, 625, 1176
TspRI CASTG 4 cut(s) 250, 436, 585, 958
VneI GTGCAC 1 cut(s) 553
VpaK11BI GGWCC 1 cut(s) 563
XapI RAATTY 1 cut(s) 914
XbaI TCTAGA 1 cut(s) 757
XceI RCATGY 2 cut(s) 443, 855
XmnI GAANNNNTTC 2 cut(s) 734, 753
XspI CTAG 3 cut(s) 269, 689, 758
ZrmI AGTACT 1 cut(s) 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.