Rh5BG404200

Isovaleryl-CoA dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0006675
Physical Location & Seq
Reverse (-)
65507712 .. 65508382
671 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG404200.1

Sequence Viewer

Length: 417 bp
ATGCAAAGACTGGTTTCAGCGAGGTCTGGGATTACAAGTCTTCTGAGAAATCAGAGACACGCGGCTTCTTTCTCTACCTCTTTACTCTTCGATGATACTCAAATTCAGTTTAAGGAAAGTGTGGGTCAATTTGCACAAGAACACATTGCCCCACATGCTGCAAAAGTAGACCAAACTAATAATTTTCCCAAGGAGGTCAACTTATGGAAGCTCATGGGAGAGTTTAGCCTTCATGGAATTACTGCCCCAGGTATCATTTTCATCAATTGTGATTTGGCTGCTTTATCATGTACAGAAGCAATTTTCTTTTTAACAGATTATGTATCAATTTTCGGGTGTGTATGCGATGCTATGAACTTATGTTTGCTCTTCAGTTGTTCAGGGTCTAGTTTACGTAACAAGTTTCTTGTTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0003853 GO:0003995 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006139 GO:0006163 GO:0006195 GO:0006520 GO:0006551 GO:0006552 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008470 GO:0009056 GO:0009058 GO:0009063 GO:0009081 GO:0009083 GO:0009109 GO:0009117 GO:0009150 GO:0009154 GO:0009166 GO:0009259 GO:0009261 GO:0009987 GO:0016054 GO:0016491 GO:0016627 GO:0017076 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019752 GO:0030554 GO:0031974 GO:0032553 GO:0032555 GO:0032559 GO:0033865 GO:0033869 GO:0033875 GO:0034031 GO:0034032 GO:0034034 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035337 GO:0035383 GO:0035639 GO:0036094 GO:0036115 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044273 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046434 GO:0046483 GO:0046700 GO:0051186 GO:0051187 GO:0055086 GO:0055114 GO:0070013 GO:0071704 GO:0072521 GO:0072523 GO:0097159 GO:0097367 GO:1901135 GO:1901136 GO:1901265 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901568 GO:1901569 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1902189 GO:1902190 GO:1902192 GO:1902195 GO:1902196 GO:1902198
KEGG Pathways
Metabolic & Signaling
ko00280 ko01100 map00280 map01100
Pfam Domains
Protein Families
Acyl-CoA_dh_1 Acyl-CoA_dh_M Acyl-CoA_dh_N

Protein Analysis

138

Amino Acids

15.27

Weight (kDa)

6.39

Isoelectric Point (pI)

33.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyl-CoA_dh_N PF02771 32 - 83 1.7e-09 Acyl-CoA dehydrogenase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 168
AccII CGCG 1 cut(s) 62
AciI CCGC 1 cut(s) 62
AcsI RAATTY 1 cut(s) 102
AcuI CTGAAG 1 cut(s) 355
AfaI GTAC 1 cut(s) 292
AjnI CCWGG 1 cut(s) 247
AluBI AGCT 1 cut(s) 211
AluI AGCT 1 cut(s) 211
Alw26I GTCTC 1 cut(s) 49
ApeKI GCWGC 2 cut(s) 158, 278
ApoI RAATTY 1 cut(s) 102
BbsI GAAGAC 1 cut(s) 32
BbvI GCAGC 2 cut(s) 145, 265
BciT130I CCWGG 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 49
BfaI CTAG 1 cut(s) 387
BisI GCNGC 3 cut(s) 63, 159, 279
BlsI GCNGC 3 cut(s) 64, 160, 280
Bme1390I CCNGG 1 cut(s) 249
BmrFI CCNGG 1 cut(s) 249
BmsI GCATC 1 cut(s) 337
BpiI GAAGAC 1 cut(s) 32
BsaAI YACGTR 1 cut(s) 395
BsaJI CCNNGG 2 cut(s) 189, 247
Bse1I ACTGG 1 cut(s) 15
Bse3DI GCAATG 1 cut(s) 144
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 2 cut(s) 189, 247
BseMI GCAATG 1 cut(s) 144
BseMII CTCAG 1 cut(s) 35
BseNI ACTGG 1 cut(s) 15
BseXI GCAGC 2 cut(s) 145, 265
Bsh1236I CGCG 1 cut(s) 62
BsmAI GTCTC 1 cut(s) 49
Bsp1407I TGTACA 1 cut(s) 290
BspACI CCGC 1 cut(s) 62
BspCNI CTCAG 1 cut(s) 36
BspFNI CGCG 1 cut(s) 62
BspQI GCTCTTC 1 cut(s) 374
BsrDI GCAATG 1 cut(s) 144
BsrGI TGTACA 1 cut(s) 290
BsrI ACTGG 1 cut(s) 15
BssECI CCNNGG 2 cut(s) 189, 247
BssT1I CCWWGG 1 cut(s) 189
Bst2UI CCWGG 1 cut(s) 249
Bst6I CTCTTC 2 cut(s) 92, 374
BstAUI TGTACA 1 cut(s) 290
BstBAI YACGTR 1 cut(s) 395
BstDEI CTNAG 1 cut(s) 44
BstFNI CGCG 1 cut(s) 62
BstMAI GTCTC 1 cut(s) 49
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNI CCWGG 1 cut(s) 249
BstNSI RCATGY 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 247
BstSNI TACGTA 1 cut(s) 395
BstUI CGCG 1 cut(s) 62
BstV1I GCAGC 2 cut(s) 145, 265
BstV2I GAAGAC 1 cut(s) 32
BtgZI GCGATG 1 cut(s) 360
Csp6I GTAC 1 cut(s) 291
CviAII CATG 4 cut(s) 155, 214, 233, 288
CviJI RGCY 4 cut(s) 65, 211, 228, 278
CviKI_1 RGCY 4 cut(s) 65, 211, 228, 278
CviQI GTAC 1 cut(s) 291
DdeI CTNAG 1 cut(s) 44
Eam1104I CTCTTC 2 cut(s) 92, 374
EarI CTCTTC 2 cut(s) 92, 374
Eco105I TACGTA 1 cut(s) 395
Eco130I CCWWGG 1 cut(s) 189
Eco57I CTGAAG 1 cut(s) 355
EcoRII CCWGG 1 cut(s) 247
EcoT14I CCWWGG 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 189
FaeI CATG 4 cut(s) 158, 217, 236, 291
FatI CATG 4 cut(s) 154, 213, 232, 287
FblI GTMKAC 1 cut(s) 168
Fnu4HI GCNGC 3 cut(s) 63, 159, 279
Fsp4HI GCNGC 3 cut(s) 63, 159, 279
FspBI CTAG 1 cut(s) 387
GluI GCNGC 3 cut(s) 63, 159, 279
Hin1II CATG 4 cut(s) 158, 217, 236, 291
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
Hpy166II GTNNAC 3 cut(s) 169, 199, 392
Hpy188I TCNGA 2 cut(s) 45, 54
Hpy8I GTNNAC 3 cut(s) 169, 199, 392
HpyAV CCTTC 1 cut(s) 239
HpyCH4IV ACGT 1 cut(s) 394
HpyCH4V TGCA 3 cut(s) 4, 134, 161
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 1 cut(s) 44
HpySE526I ACGT 1 cut(s) 394
Hsp92II CATG 4 cut(s) 158, 217, 236, 291
LguI GCTCTTC 1 cut(s) 374
LpnPI CCDG 4 cut(s) 12, 234, 261, 366
Lsp1109I GCAGC 2 cut(s) 145, 265
LweI GCATC 1 cut(s) 337
MaeI CTAG 1 cut(s) 387
MaeII ACGT 1 cut(s) 394
MaeIII GTNAC 1 cut(s) 395
MboII GAAGA 3 cut(s) 32, 79, 361
MfeI CAATTG 1 cut(s) 265
MluCI AATT 7 cut(s) 102, 128, 181, 237, 265, 300, 327
MnlI CCTC 3 cut(s) 15, 88, 187
MseI TTAA 2 cut(s) 111, 311
MspR9I CCNGG 1 cut(s) 249
MunI CAATTG 1 cut(s) 265
MvaI CCWGG 1 cut(s) 249
MvnI CGCG 1 cut(s) 62
MwoI GCNNNNNNNGC 1 cut(s) 155
NlaIII CATG 4 cut(s) 158, 217, 236, 291
NspI RCATGY 1 cut(s) 158
PciSI GCTCTTC 1 cut(s) 374
PkrI GCNGC 3 cut(s) 64, 160, 280
Ppu21I YACGTR 1 cut(s) 395
Psp6I CCWGG 1 cut(s) 247
PspGI CCWGG 1 cut(s) 247
RsaI GTAC 1 cut(s) 292
RsaNI GTAC 1 cut(s) 291
SapI GCTCTTC 1 cut(s) 374
SaqAI TTAA 2 cut(s) 111, 311
SatI GCNGC 3 cut(s) 63, 159, 279
ScrFI CCNGG 1 cut(s) 249
SetI ASST 6 cut(s) 26, 80, 198, 213, 253, 397
SfaNI GCATC 1 cut(s) 337
SnaBI TACGTA 1 cut(s) 395
Sse9I AATT 7 cut(s) 102, 128, 181, 237, 265, 300, 327
SsiI CCGC 1 cut(s) 62
SspMI CTAG 1 cut(s) 387
StyD4I CCNGG 1 cut(s) 247
StyI CCWWGG 1 cut(s) 189
TaiI ACGT 1 cut(s) 397
TaqI TCGA 1 cut(s) 90
TasI AATT 7 cut(s) 102, 128, 181, 237, 265, 300, 327
TatI WGTACW 1 cut(s) 290
TauI GCSGC 1 cut(s) 65
Tru1I TTAA 2 cut(s) 111, 311
Tru9I TTAA 2 cut(s) 111, 311
TseI GCWGC 2 cut(s) 158, 278
TspDTI ATGAA 3 cut(s) 221, 250, 368
XapI RAATTY 1 cut(s) 102
XceI RCATGY 1 cut(s) 158
XmiI GTMKAC 1 cut(s) 168
XspI CTAG 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.