Rmu_sc0011881.1_g000001

Isovaleryl-CoA dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011881.1
OG0006675
Physical Location & Seq
Forward (+)
1 .. 4664
4664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011881.1_g000001.1.cds

Sequence Viewer

Length: 977 bp
aggaatatggagggctgggtcttggctacttgtatcactgcattgctatggaagaaataagccgtgcttcaggatctgttggcctatcatatggtgcccattccaacctgtgcattaatcaattggtgaggcatggaaatcctactcagaaagagaagtatttgccaaagcttattagtggagagcatgtaggggctcttgcaatgagcgagcccaattctggttctgatgtagttagcatgaagtgcaaagctgatcgagcagatgggggttatatcttaaatgggaacaagatgtggtgcaccaatggaccagttgctcaaacattggttgtttatgcaaaaacggacataaatgcgggctcaaagggaatcacagcgttcatcattgagaaggggatgcccggattcagtactgcccagaaattagacaaactcggcatgcgaggaagcgatacatgtgagcttgtctttgagaattgctttgttccgaatgaaaatgttcttggccaggaaggaaaaggggtctatgtcatgatgtcagggttagatttagagaggcttgttttagcaggtgggcccctaggtattatgcaggcatgtatggatgttgtccttccttatgttcgacagcgagagcagtttggccgtcctattggagagtttcagcttatacaggggaaaattgctgacatgtatacttctttacaatcttcaagggcctatgtgtattctgttgcaagggaatgtgacaatggaagagttgacccaaaggactgtgcaggagttatactatctacggctgaaagagccacgcaggttgctttgcaggctatacaatgcttaggtggtaatggctatgtaaatgagtacccaactggccgtctccttcgagatgccaaactctatgagattggagcagggactagtgagatcagaaggatgataattggtcgtgggctatttaaggagcaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0003853 GO:0003995 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006139 GO:0006163 GO:0006195 GO:0006520 GO:0006551 GO:0006552 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008470 GO:0009056 GO:0009058 GO:0009063 GO:0009081 GO:0009083 GO:0009109 GO:0009117 GO:0009150 GO:0009154 GO:0009166 GO:0009259 GO:0009261 GO:0009987 GO:0016054 GO:0016491 GO:0016627 GO:0017076 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019752 GO:0030554 GO:0031974 GO:0032553 GO:0032555 GO:0032559 GO:0033865 GO:0033869 GO:0033875 GO:0034031 GO:0034032 GO:0034034 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035337 GO:0035383 GO:0035639 GO:0036094 GO:0036115 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044273 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046434 GO:0046483 GO:0046700 GO:0051186 GO:0051187 GO:0055086 GO:0055114 GO:0070013 GO:0071704 GO:0072521 GO:0072523 GO:0097159 GO:0097367 GO:1901135 GO:1901136 GO:1901265 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901568 GO:1901569 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1902189 GO:1902190 GO:1902192 GO:1902195 GO:1902196 GO:1902198
KEGG Pathways
Metabolic & Signaling
ko00280 ko01100 map00280 map01100
Pfam Domains
Protein Families
Acyl-CoA_dh_1 Acyl-CoA_dh_M Acyl-CoA_dh_N

Protein Analysis

324

Amino Acids

35.03

Weight (kDa)

7.08

Isoelectric Point (pI)

28.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 562
Acc36I ACCTGC 2 cut(s) 562, 807
AccB1I GGYRCC 1 cut(s) 94
AccI GTMKAC 1 cut(s) 697
AciI CCGC 1 cut(s) 358
AclWI GGATC 1 cut(s) 81
AcoI YGGCCR 3 cut(s) 507, 645, 879
AcuI CTGAAG 1 cut(s) 53
AfaI GTAC 2 cut(s) 414, 871
AfiI CCNNNNNNNGG 1 cut(s) 220
AflIII ACRYGT 2 cut(s) 457, 692
AgsI TTSAA 1 cut(s) 716
AhlI ACTAGT 1 cut(s) 925
AjnI CCWGG 1 cut(s) 509
AjuI GAANNNNNNNTTGG 2 cut(s) 488, 520
AluBI AGCT 4 cut(s) 171, 253, 465, 669
AluI AGCT 4 cut(s) 171, 253, 465, 669
Alw21I GWGCWC 1 cut(s) 304
Alw26I GTCTC 1 cut(s) 889
Alw44I GTGCAC 1 cut(s) 300
AlwI GGATC 1 cut(s) 81
AlwNI CAGNNNCTG 1 cut(s) 76
AoxI GGCC 6 cut(s) 81, 507, 577, 645, 719, 879
ApaI GGGCCC 1 cut(s) 581
ApaLI GTGCAC 1 cut(s) 300
AseI ATTAAT 1 cut(s) 116
Asp700I GAANNNNTTC 1 cut(s) 500
AspA2I CCTAGG 1 cut(s) 582
AspS9I GGNCC 4 cut(s) 310, 577, 578, 719
AsuC2I CCSGG 1 cut(s) 404
AsuHPI GGTGA 1 cut(s) 138
AvaII GGWCC 1 cut(s) 310
AvrII CCTAGG 1 cut(s) 582
BaeGI GKGCMC 3 cut(s) 99, 304, 581
BalI TGGCCA 1 cut(s) 509
BanI GGYRCC 1 cut(s) 94
BanII GRGCYC 4 cut(s) 198, 215, 364, 581
Bbv12I GWGCWC 1 cut(s) 304
BccI CCATC 1 cut(s) 259
BceAI ACGGC 4 cut(s) 47, 632, 815, 866
BciT130I CCWGG 1 cut(s) 511
BcnI CCSGG 1 cut(s) 404
BcoDI GTCTC 1 cut(s) 889
BcuI ACTAGT 1 cut(s) 925
BfaI CTAG 2 cut(s) 583, 926
BfuAI ACCTGC 2 cut(s) 562, 807
BlnI CCTAGG 1 cut(s) 582
BmcAI AGTACT 1 cut(s) 414
Bme1390I CCNGG 2 cut(s) 404, 511
Bme18I GGWCC 1 cut(s) 310
BmgT120I GGNCC 4 cut(s) 310, 577, 578, 719
BmiI GGNNCC 3 cut(s) 96, 579, 580
BmrFI CCNGG 2 cut(s) 404, 511
BmsI GCATC 2 cut(s) 389, 885
Bpu10I CCTNAGC 1 cut(s) 843
BpuMI CCSGG 1 cut(s) 404
BsaJI CCNNGG 1 cut(s) 582
BsaXI ACNNNNNCTCC 2 cut(s) 173, 203
Bsc4I CCNNNNNNNGG 1 cut(s) 220
Bse1I ACTGG 2 cut(s) 313, 882
Bse3DI GCAATG 2 cut(s) 41, 209
BseBI CCWGG 1 cut(s) 511
BseDI CCNNGG 1 cut(s) 582
BseGI GGATG 3 cut(s) 404, 612, 947
BseLI CCNNNNNNNGG 1 cut(s) 220
BseMI GCAATG 2 cut(s) 41, 209
BseMII CTCAG 1 cut(s) 160
BseNI ACTGG 2 cut(s) 313, 882
BseSI GKGCMC 3 cut(s) 99, 304, 581
BseYI CCCAGC 1 cut(s) 15
BsgI GTGCAG 1 cut(s) 800
BshFI GGCC 6 cut(s) 83, 509, 579, 647, 721, 881
BshNI GGYRCC 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 304
BsiSI CCGG 1 cut(s) 404
BslFI GGGAC 1 cut(s) 936
BslI CCNNNNNNNGG 1 cut(s) 220
BsmAI GTCTC 1 cut(s) 889
BsmBI CGTCTC 1 cut(s) 889
BsmFI GGGAC 1 cut(s) 936
BsnI GGCC 6 cut(s) 83, 509, 579, 647, 721, 881
Bsp120I GGGCCC 1 cut(s) 577
Bsp1286I GDGCHC 6 cut(s) 99, 198, 215, 304, 364, 581
Bsp143I GATC 3 cut(s) 73, 255, 932
BspACI CCGC 1 cut(s) 358
BspANI GGCC 6 cut(s) 83, 509, 579, 647, 721, 881
BspCNI CTCAG 1 cut(s) 159
BspHI TCATGA 1 cut(s) 533
BspLI GGNNCC 3 cut(s) 96, 579, 580
BspMI ACCTGC 2 cut(s) 562, 807
BspPI GGATC 1 cut(s) 81
BspT107I GGYRCC 1 cut(s) 94
BsrDI GCAATG 2 cut(s) 41, 209
BsrI ACTGG 2 cut(s) 313, 882
BssECI CCNNGG 1 cut(s) 582
BssMI GATC 3 cut(s) 73, 255, 932
BssNAI GTATAC 1 cut(s) 698
BssT1I CCWWGG 1 cut(s) 582
Bst1107I GTATAC 1 cut(s) 698
Bst2UI CCWGG 1 cut(s) 511
Bst4CI ACNGT 1 cut(s) 778
Bst6I CTCTTC 1 cut(s) 753
BstAPI GCANNNNNTGC 1 cut(s) 245
BstC8I GCNNGC 5 cut(s) 211, 360, 442, 596, 830
BstDEI CTNAG 2 cut(s) 146, 843
BstF5I GGATG 3 cut(s) 404, 612, 947
BstKTI GATC 3 cut(s) 76, 258, 935
BstMAI GTCTC 1 cut(s) 889
BstMBI GATC 3 cut(s) 73, 255, 932
BstMWI GCNNNNNNNGC 4 cut(s) 245, 259, 808, 829
BstNI CCWGG 1 cut(s) 511
BstNSI RCATGY 5 cut(s) 190, 444, 461, 602, 696
BstSCI CCNGG 2 cut(s) 402, 509
BstSLI GKGCMC 3 cut(s) 99, 304, 581
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BstZ17I GTATAC 1 cut(s) 698
BsuRI GGCC 6 cut(s) 83, 509, 579, 647, 721, 881
BtsCI GGATG 3 cut(s) 404, 612, 947
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 36
BveI ACCTGC 2 cut(s) 562, 807
Cac8I GCNNGC 5 cut(s) 211, 360, 442, 596, 830
CaiI CAGNNNCTG 1 cut(s) 76
CciI TCATGA 1 cut(s) 533
Cfr13I GGNCC 4 cut(s) 310, 577, 578, 719
Csp6I GTAC 2 cut(s) 413, 870
CspCI CAANNNNNGTGG 2 cut(s) 801, 836
CviAII CATG 8 cut(s) 133, 187, 240, 441, 458, 534, 599, 693
CviQI GTAC 2 cut(s) 413, 870
DdeI CTNAG 2 cut(s) 146, 843
DpnI GATC 3 cut(s) 75, 257, 934
DpnII GATC 3 cut(s) 73, 255, 932
EaeI YGGCCR 3 cut(s) 507, 645, 879
Eam1104I CTCTTC 1 cut(s) 753
EarI CTCTTC 1 cut(s) 753
Eco130I CCWWGG 1 cut(s) 582
Eco24I GRGCYC 4 cut(s) 198, 215, 364, 581
Eco47I GGWCC 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 53
EcoO109I RGGNCCY 2 cut(s) 578, 719
EcoRII CCWGG 1 cut(s) 509
EcoT14I CCWWGG 1 cut(s) 582
EcoT38I GRGCYC 4 cut(s) 198, 215, 364, 581
ErhI CCWWGG 1 cut(s) 582
Esp3I CGTCTC 1 cut(s) 889
FaeI CATG 8 cut(s) 136, 190, 243, 444, 461, 537, 602, 696
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FaqI GGGAC 1 cut(s) 936
FatI CATG 8 cut(s) 132, 186, 239, 440, 457, 533, 598, 692
FauI CCCGC 1 cut(s) 351
FauNDI CATATG 1 cut(s) 90
FblI GTMKAC 1 cut(s) 697
FokI GGATG 3 cut(s) 411, 619, 954
FriOI GRGCYC 4 cut(s) 198, 215, 364, 581
FspBI CTAG 2 cut(s) 583, 926
GsaI CCCAGC 1 cut(s) 19
HaeIII GGCC 6 cut(s) 83, 509, 579, 647, 721, 881
HapII CCGG 1 cut(s) 404
Hin1II CATG 8 cut(s) 136, 190, 243, 444, 461, 537, 602, 696
HincII GTYRAC 1 cut(s) 765
HindII GTYRAC 1 cut(s) 765
HindIII AAGCTT 1 cut(s) 169
HinfI GANTC 2 cut(s) 371, 407
HpaII CCGG 1 cut(s) 404
HphI GGTGA 1 cut(s) 138
Hpy166II GTNNAC 3 cut(s) 302, 698, 765
Hpy188I TCNGA 4 cut(s) 149, 228, 491, 937
Hpy188III TCNNGA 3 cut(s) 71, 534, 892
Hpy8I GTNNAC 3 cut(s) 302, 698, 765
HpyAV CCTTC 5 cut(s) 387, 508, 625, 898, 932
HpyCH4III ACNGT 1 cut(s) 778
HpyF10VI GCNNNNNNNGC 4 cut(s) 245, 259, 808, 829
HpyF3I CTNAG 2 cut(s) 146, 843
Hsp92II CATG 8 cut(s) 136, 190, 243, 444, 461, 537, 602, 696
Kzo9I GATC 3 cut(s) 73, 255, 932
LmnI GCTCC 2 cut(s) 916, 969
LweI GCATC 2 cut(s) 389, 885
MaeI CTAG 2 cut(s) 583, 926
MaeIII GTNAC 1 cut(s) 748
MalI GATC 3 cut(s) 75, 257, 934
MboI GATC 3 cut(s) 73, 255, 932
MboII GAAGA 3 cut(s) 64, 704, 770
MfeI CAATTG 1 cut(s) 121
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 6 cut(s) 99, 198, 215, 304, 364, 581
MlsI TGGCCA 1 cut(s) 509
MluCI AATT 6 cut(s) 121, 216, 424, 477, 683, 947
MluNI TGGCCA 1 cut(s) 509
MmeI TCCRAC 1 cut(s) 128
MnlI CCTC 4 cut(s) 4, 122, 439, 551
Mox20I TGGCCA 1 cut(s) 509
MroXI GAANNNNTTC 1 cut(s) 500
MscI TGGCCA 1 cut(s) 509
MseI TTAA 3 cut(s) 116, 280, 965
MslI CAYNNNNRTG 1 cut(s) 46
Msp20I TGGCCA 1 cut(s) 509
MspI CCGG 1 cut(s) 404
MspR9I CCNGG 2 cut(s) 404, 511
MunI CAATTG 1 cut(s) 121
MvaI CCWGG 1 cut(s) 511
MwoI GCNNNNNNNGC 4 cut(s) 245, 259, 808, 829
NciI CCSGG 1 cut(s) 404
NdeI CATATG 1 cut(s) 90
NdeII GATC 3 cut(s) 73, 255, 932
NlaIII CATG 8 cut(s) 136, 190, 243, 444, 461, 537, 602, 696
NlaIV GGNNCC 3 cut(s) 96, 579, 580
NmeAIII GCCGAG 1 cut(s) 416
NmuCI GTSAC 1 cut(s) 748
NspI RCATGY 5 cut(s) 190, 444, 461, 602, 696
PaeI GCATGC 1 cut(s) 444
PagI TCATGA 1 cut(s) 533
PaqCI CACCTGC 1 cut(s) 562
PciI ACATGT 2 cut(s) 457, 692
PdmI GAANNNNTTC 1 cut(s) 500
PfeI GAWTC 2 cut(s) 371, 407
PscI ACATGT 2 cut(s) 457, 692
PshBI ATTAAT 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 509
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 1 cut(s) 509
PspN4I GGNNCC 3 cut(s) 96, 579, 580
PspOMI GGGCCC 1 cut(s) 577
PspPI GGNCC 4 cut(s) 310, 577, 578, 719
PstNI CAGNNNCTG 1 cut(s) 76
PsuI RGATCY 1 cut(s) 73
RsaI GTAC 2 cut(s) 414, 871
RsaNI GTAC 2 cut(s) 413, 870
RseI CAYNNNNRTG 1 cut(s) 46
SaqAI TTAA 3 cut(s) 116, 280, 965
Sau3AI GATC 3 cut(s) 73, 255, 932
Sau96I GGNCC 4 cut(s) 310, 577, 578, 719
ScaI AGTACT 1 cut(s) 414
ScrFI CCNGG 2 cut(s) 404, 511
SduI GDGCHC 6 cut(s) 99, 198, 215, 304, 364, 581
SetI ASST 9 cut(s) 110, 173, 255, 467, 576, 588, 671, 821, 849
SfaNI GCATC 2 cut(s) 389, 885
SinI GGWCC 1 cut(s) 310
SmiMI CAYNNNNRTG 1 cut(s) 46
SpeI ACTAGT 1 cut(s) 925
SphI GCATGC 1 cut(s) 444
Sse9I AATT 6 cut(s) 121, 216, 424, 477, 683, 947
SsiI CCGC 1 cut(s) 358
SspMI CTAG 2 cut(s) 583, 926
StyD4I CCNGG 2 cut(s) 402, 509
StyI CCWWGG 1 cut(s) 582
TaaI ACNGT 1 cut(s) 778
TaqI TCGA 3 cut(s) 258, 627, 891
TasI AATT 6 cut(s) 121, 216, 424, 477, 683, 947
TatI WGTACW 1 cut(s) 412
TfiI GAWTC 2 cut(s) 371, 407
Tru1I TTAA 3 cut(s) 116, 280, 965
Tru9I TTAA 3 cut(s) 116, 280, 965
TscAI CASTG 1 cut(s) 43
TseFI GTSAC 1 cut(s) 748
Tsp45I GTSAC 1 cut(s) 748
TspDTI ATGAA 3 cut(s) 256, 372, 509
TspGWI ACGGA 1 cut(s) 361
TspRI CASTG 1 cut(s) 43
VneI GTGCAC 1 cut(s) 300
VpaK11BI GGWCC 1 cut(s) 310
VspI ATTAAT 1 cut(s) 116
XceI RCATGY 5 cut(s) 190, 444, 461, 602, 696
XmaJI CCTAGG 1 cut(s) 582
XmiI GTMKAC 1 cut(s) 697
XmnI GAANNNNTTC 1 cut(s) 500
XspI CTAG 2 cut(s) 583, 926
ZrmI AGTACT 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.