Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0006675

Physical Location & Seq

Genomic Coordinates Reverse (-)

27409580 .. 27442913

Gene Structure 33334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG167300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGGGACTGATGTGAATGAGAAATGGAGGAAGAGCCAATTGTTGTTGGGTATTGCAAGGAAGATGGTTATGATTGATAGGACAAAGGGCAAAAGGGTAAGATCAACAAATCAAGTCATAAAATACATCAAAATTAGAAGGTATTCAGAGGAATATGGAGGGCTGGGTCTTGGCTACTTGTATCACTGCATTGCTATGGAAGAAATAAGGCGTGCTTCAGGATCTGTTGGACTATCATTTGGTGCCCATTCCAATGTGTGCATTAATCAATTGGTGAGGCATGGAAATCTTACTCAGAAAGAGAAGTATTTGCCAAAGCTTATTAGTGGAGAGGAAATATGTAGGGGCTCTTGCAATGAGCGAGCCCAATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003853 GO:0003995 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006139 GO:0006163 GO:0006195 GO:0006520 GO:0006551 GO:0006552 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008470 GO:0009056 GO:0009058 GO:0009063 GO:0009081 GO:0009083 GO:0009109 GO:0009117 GO:0009150 GO:0009154 GO:0009166 GO:0009259 GO:0009261 GO:0009987 GO:0016054 GO:0016491 GO:0016627 GO:0017076 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019752 GO:0030554 GO:0031974 GO:0032553 GO:0032555 GO:0032559 GO:0033865 GO:0033869 GO:0033875 GO:0034031 GO:0034032 GO:0034034 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035337 GO:0035383 GO:0035639 GO:0036094 GO:0036115 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044273 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046434 GO:0046483 GO:0046700 GO:0051186 GO:0051187 GO:0055086 GO:0055114 GO:0070013 GO:0071704 GO:0072521 GO:0072523 GO:0097159 GO:0097367 GO:1901135 GO:1901136 GO:1901265 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901568 GO:1901569 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1902189 GO:1902190 GO:1902192 GO:1902195 GO:1902196 GO:1902198

KEGG Pathways

Metabolic & Signaling

ko00280 ko01100 map00280 map01100

Pfam Domains

Protein Families

Acyl-CoA_dh_1 Acyl-CoA_dh_M Acyl-CoA_dh_N

Protein Analysis

124

Amino Acids

14.12

Weight (kDa)

9.83

Isoelectric Point (pI)

33.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyl-CoA_dh_N	PF02771	48 - 111	6.5e-21	Acyl-CoA dehydrogenase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45300
fragaria_vesca	FvH4_3g32900 FvH4_3g32900 FvH4_3g32900 FvH4_3g32900 FvH4_3g32900 FvH4_3g32900 FvH4_3g32900 FvH4_3g32900
malus_domestica	MD03G1116100.v1.1
prunus_persica	Prupe.6G097600_v2.0.a1 Prupe.6G097600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0060041
rosa_laevigata	RLG00000035340
rosa_multiflora	Rmu_sc0000493.1_g000018 Rmu_sc0011881.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020630
rosa_rugosa	Rorug05G0327800
rosa_samantha	Rh5AG391500 Rh5BG404100 Rh5BG404200 Rh5CG427900 Rh5DG419700 Rh6BG167300 Rh6DG152400
rosa_wichuraiana	Rw5G036890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	242
AclWI	GGATC	1 cut(s)	229
AcuI	CTGAAG	1 cut(s)	201
AluBI	AGCT	1 cut(s)	319
AluI	AGCT	1 cut(s)	319
AlwI	GGATC	1 cut(s)	229
AlwNI	CAGNNNCTG	1 cut(s)	224
AseI	ATTAAT	1 cut(s)	264
Asp700I	GAANNNNTTC	1 cut(s)	142
AsuHPI	GGTGA	1 cut(s)	286
BaeGI	GKGCMC	1 cut(s)	247
BanI	GGYRCC	1 cut(s)	242
BanII	GRGCYC	2 cut(s)	350, 367
BccI	CCATC	1 cut(s)	58
BmiI	GGNNCC	1 cut(s)	244
Bse3DI	GCAATG	2 cut(s)	189, 361
BseMI	GCAATG	2 cut(s)	189, 361
BseMII	CTCAG	1 cut(s)	308
BseSI	GKGCMC	1 cut(s)	247
BseYI	CCCAGC	1 cut(s)	163
BshNI	GGYRCC	1 cut(s)	242
BslFI	GGGAC	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	19
Bsp1286I	GDGCHC	3 cut(s)	247, 350, 367
Bsp143I	GATC	2 cut(s)	101, 221
BspCNI	CTCAG	1 cut(s)	307
BspLI	GGNNCC	1 cut(s)	244
BspPI	GGATC	1 cut(s)	229
BspQI	GCTCTTC	1 cut(s)	26
BspT107I	GGYRCC	1 cut(s)	242
BsrDI	GCAATG	2 cut(s)	189, 361
BssMI	GATC	2 cut(s)	101, 221
Bst6I	CTCTTC	1 cut(s)	26
BstC8I	GCNNGC	2 cut(s)	213, 363
BstDEI	CTNAG	1 cut(s)	294
BstKTI	GATC	2 cut(s)	104, 224
BstMBI	GATC	2 cut(s)	101, 221
BstSLI	GKGCMC	1 cut(s)	247
BstX2I	RGATCY	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	221
BtsI	GCAGTG	1 cut(s)	184
BtsIMutI	CAGTG	1 cut(s)	184
Cac8I	GCNNGC	2 cut(s)	213, 363
CaiI	CAGNNNCTG	1 cut(s)	224
CviAII	CATG	1 cut(s)	281
CviJI	RGCY	6 cut(s)	36, 163, 174, 319, 348, 365
CviKI_1	RGCY	6 cut(s)	36, 163, 174, 319, 348, 365
DdeI	CTNAG	1 cut(s)	294
DpnI	GATC	2 cut(s)	103, 223
DpnII	GATC	2 cut(s)	101, 221
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
Eco24I	GRGCYC	2 cut(s)	350, 367
Eco57I	CTGAAG	1 cut(s)	201
EcoT38I	GRGCYC	2 cut(s)	350, 367
FaeI	CATG	1 cut(s)	284
FaiI	YATR	6 cut(s)	71, 119, 156, 197, 282, 340
FalI	AAGNNNNNCTT	2 cut(s)	199, 231
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	1 cut(s)	280
FriOI	GRGCYC	2 cut(s)	350, 367
GsaI	CCCAGC	1 cut(s)	167
Hin1II	CATG	1 cut(s)	284
HindIII	AAGCTT	1 cut(s)	317
HphI	GGTGA	1 cut(s)	286
Hpy188I	TCNGA	2 cut(s)	148, 297
Hpy188III	TCNNGA	1 cut(s)	219
HpyAV	CCTTC	1 cut(s)	132
HpyCH4V	TGCA	4 cut(s)	56, 189, 261, 354
HpyF3I	CTNAG	1 cut(s)	294
Hsp92II	CATG	1 cut(s)	284
Kzo9I	GATC	2 cut(s)	101, 221
LguI	GCTCTTC	1 cut(s)	26
LpnPI	CCDG	2 cut(s)	149, 204
MalI	GATC	2 cut(s)	103, 223
MboI	GATC	2 cut(s)	101, 221
MboII	GAAGA	3 cut(s)	43, 73, 212
MfeI	CAATTG	3 cut(s)	38, 269, 368
MflI	RGATCY	1 cut(s)	221
MhlI	GDGCHC	3 cut(s)	247, 350, 367
MluCI	AATT	4 cut(s)	38, 132, 269, 368
MmeI	TCCRAC	1 cut(s)	208
MnlI	CCTC	5 cut(s)	21, 142, 152, 270, 325
MroXI	GAANNNNTTC	1 cut(s)	142
MseI	TTAA	1 cut(s)	264
MslI	CAYNNNNRTG	2 cut(s)	194, 252
MunI	CAATTG	3 cut(s)	38, 269, 368
NdeII	GATC	2 cut(s)	101, 221
NlaIII	CATG	1 cut(s)	284
NlaIV	GGNNCC	1 cut(s)	244
PciSI	GCTCTTC	1 cut(s)	26
PdmI	GAANNNNTTC	1 cut(s)	142
PshBI	ATTAAT	1 cut(s)	264
PspFI	CCCAGC	1 cut(s)	163
PspN4I	GGNNCC	1 cut(s)	244
PstNI	CAGNNNCTG	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	221
RseI	CAYNNNNRTG	2 cut(s)	194, 252
SapI	GCTCTTC	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	264
Sau3AI	GATC	2 cut(s)	101, 221
SduI	GDGCHC	3 cut(s)	247, 350, 367
SetI	ASST	2 cut(s)	143, 321
SgeI	CNNG	9 cut(s)	69, 125, 176, 182, 190, 224, 231, 293, 363
SmiMI	CAYNNNNRTG	2 cut(s)	194, 252
Sse9I	AATT	4 cut(s)	38, 132, 269, 368
TasI	AATT	4 cut(s)	38, 132, 269, 368
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	1 cut(s)	191
TspRI	CASTG	1 cut(s)	191
VspI	ATTAAT	1 cut(s)	264
XmnI	GAANNNNTTC	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.