Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000493.1

Orthogroup ID

OG0006675

Physical Location & Seq

Genomic Coordinates Reverse (-)

97538 .. 99699

Gene Structure 2162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000493.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

atgcacagactggtttcagcgaggtctgggattacaagtcttctgagaaatcagagacacgcggcttctttctctacctctttactcttcgatgatactcaaattcagtttaaggaaagtgtgggtcaatttgcacaagaacacattgccccacatgcttcaaaagtagaccaaactaattattttcccaaggaggtcaacttatggaagctcatgggagagtttaatcttcatggaattactgccccagttgttcagagtctagtttacgtaacaagtttcttggtatgtaaatttgtaatcgaagatgctgtaagggcctatgtgtattctgttgcaagggaatgtgacaatggaagagttgacccaaaggactgtgcaggagttatactatctacggctgaaagagccacgcaggttgctttgcaggctatacaatgcttaggtggtaatggctatgtaaatgagtacccaactggccgtctccttcgagatgccaaactctatgagattggagcagggactagtgagatcagaaggatgataattggtcgtgggctatttaaggagcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003853 GO:0003995 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006139 GO:0006163 GO:0006195 GO:0006520 GO:0006551 GO:0006552 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008470 GO:0009056 GO:0009058 GO:0009063 GO:0009081 GO:0009083 GO:0009109 GO:0009117 GO:0009150 GO:0009154 GO:0009166 GO:0009259 GO:0009261 GO:0009987 GO:0016054 GO:0016491 GO:0016627 GO:0017076 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019752 GO:0030554 GO:0031974 GO:0032553 GO:0032555 GO:0032559 GO:0033865 GO:0033869 GO:0033875 GO:0034031 GO:0034032 GO:0034034 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035337 GO:0035383 GO:0035639 GO:0036094 GO:0036115 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044273 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046434 GO:0046483 GO:0046700 GO:0051186 GO:0051187 GO:0055086 GO:0055114 GO:0070013 GO:0071704 GO:0072521 GO:0072523 GO:0097159 GO:0097367 GO:1901135 GO:1901136 GO:1901265 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901568 GO:1901569 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1902189 GO:1902190 GO:1902192 GO:1902195 GO:1902196 GO:1902198

KEGG Pathways

Metabolic & Signaling

ko00280 ko01100 map00280 map01100

Pfam Domains

Protein Families

Acyl-CoA_dh_1 Acyl-CoA_dh_M Acyl-CoA_dh_N

Protein Analysis

191

Amino Acids

21.26

Weight (kDa)

8.35

Isoelectric Point (pI)

32.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45300
fragaria_vesca	FvH4_3g32900 FvH4_3g32900 FvH4_3g32900 FvH4_3g32900 FvH4_3g32900 FvH4_3g32900 FvH4_3g32900 FvH4_3g32900
malus_domestica	MD03G1116100.v1.1
prunus_persica	Prupe.6G097600_v2.0.a1 Prupe.6G097600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0060041
rosa_laevigata	RLG00000035340
rosa_multiflora	Rmu_sc0000493.1_g000018 Rmu_sc0011881.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020630
rosa_rugosa	Rorug05G0327800
rosa_samantha	Rh5AG391500 Rh5BG404100 Rh5BG404200 Rh5CG427900 Rh5DG419700 Rh6BG167300 Rh6DG152400
rosa_wichuraiana	Rw5G036890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	406
AccI	GTMKAC	1 cut(s)	168
AccII	CGCG	1 cut(s)	62
AciI	CCGC	1 cut(s)	62
AcoI	YGGCCR	1 cut(s)	478
AcsI	RAATTY	2 cut(s)	102, 293
AfaI	GTAC	1 cut(s)	470
AgsI	TTSAA	1 cut(s)	162
AhlI	ACTAGT	1 cut(s)	524
AluBI	AGCT	1 cut(s)	211
AluI	AGCT	1 cut(s)	211
Alw26I	GTCTC	2 cut(s)	49, 488
AoxI	GGCC	2 cut(s)	318, 478
ApoI	RAATTY	2 cut(s)	102, 293
AspS9I	GGNCC	1 cut(s)	318
BbsI	GAAGAC	1 cut(s)	32
BceAI	ACGGC	2 cut(s)	414, 465
BcoDI	GTCTC	2 cut(s)	49, 488
BcuI	ACTAGT	1 cut(s)	524
BfaI	CTAG	2 cut(s)	263, 525
BfuAI	ACCTGC	1 cut(s)	406
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	318
BmrI	ACTGGG	1 cut(s)	242
BmsI	GCATC	2 cut(s)	298, 484
BmuI	ACTGGG	1 cut(s)	242
BpiI	GAAGAC	1 cut(s)	32
Bpu10I	CCTNAGC	1 cut(s)	442
BsaAI	YACGTR	1 cut(s)	271
BsaJI	CCNNGG	1 cut(s)	189
Bse1I	ACTGG	3 cut(s)	15, 248, 481
Bse3DI	GCAATG	1 cut(s)	144
BseDI	CCNNGG	1 cut(s)	189
BseGI	GGATG	1 cut(s)	546
BseMI	GCAATG	1 cut(s)	144
BseMII	CTCAG	1 cut(s)	35
BseNI	ACTGG	3 cut(s)	15, 248, 481
BsgI	GTGCAG	1 cut(s)	399
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	2 cut(s)	320, 480
BslFI	GGGAC	1 cut(s)	535
BsmAI	GTCTC	2 cut(s)	49, 488
BsmBI	CGTCTC	1 cut(s)	488
BsmFI	GGGAC	1 cut(s)	535
BsnI	GGCC	2 cut(s)	320, 480
Bsp143I	GATC	1 cut(s)	531
BspACI	CCGC	1 cut(s)	62
BspANI	GGCC	2 cut(s)	320, 480
BspCNI	CTCAG	1 cut(s)	36
BspFNI	CGCG	1 cut(s)	62
BspMI	ACCTGC	1 cut(s)	406
BsrDI	GCAATG	1 cut(s)	144
BsrI	ACTGG	3 cut(s)	15, 248, 481
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	1 cut(s)	531
BssT1I	CCWWGG	1 cut(s)	189
Bst4CI	ACNGT	1 cut(s)	377
Bst6I	CTCTTC	2 cut(s)	92, 352
BstBAI	YACGTR	1 cut(s)	271
BstC8I	GCNNGC	1 cut(s)	429
BstDEI	CTNAG	2 cut(s)	44, 442
BstF5I	GGATG	1 cut(s)	546
BstFNI	CGCG	1 cut(s)	62
BstKTI	GATC	1 cut(s)	534
BstMAI	GTCTC	2 cut(s)	49, 488
BstMBI	GATC	1 cut(s)	531
BstMWI	GCNNNNNNNGC	4 cut(s)	155, 317, 407, 428
BstNSI	RCATGY	1 cut(s)	158
BstSNI	TACGTA	1 cut(s)	271
BstUI	CGCG	1 cut(s)	62
BstV2I	GAAGAC	1 cut(s)	32
BsuRI	GGCC	2 cut(s)	320, 480
BtsCI	GGATG	1 cut(s)	546
BveI	ACCTGC	1 cut(s)	406
Cac8I	GCNNGC	1 cut(s)	429
Cfr13I	GGNCC	1 cut(s)	318
Csp6I	GTAC	1 cut(s)	469
CspCI	CAANNNNNGTGG	2 cut(s)	400, 435
CviAII	CATG	3 cut(s)	155, 214, 233
CviJI	RGCY	9 cut(s)	65, 211, 320, 401, 410, 431, 456, 480, 559
CviKI_1	RGCY	9 cut(s)	65, 211, 320, 401, 410, 431, 456, 480, 559
CviQI	GTAC	1 cut(s)	469
DdeI	CTNAG	2 cut(s)	44, 442
DpnI	GATC	1 cut(s)	533
DpnII	GATC	1 cut(s)	531
EaeI	YGGCCR	1 cut(s)	478
Eam1104I	CTCTTC	2 cut(s)	92, 352
EarI	CTCTTC	2 cut(s)	92, 352
Eco105I	TACGTA	1 cut(s)	271
Eco130I	CCWWGG	1 cut(s)	189
EcoO109I	RGGNCCY	1 cut(s)	318
EcoT14I	CCWWGG	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	189
Esp3I	CGTCTC	1 cut(s)	488
FaeI	CATG	3 cut(s)	158, 217, 236
FaqI	GGGAC	1 cut(s)	535
FatI	CATG	3 cut(s)	154, 213, 232
FblI	GTMKAC	1 cut(s)	168
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	1 cut(s)	553
Fsp4HI	GCNGC	1 cut(s)	63
FspBI	CTAG	2 cut(s)	263, 525
GluI	GCNGC	1 cut(s)	63
HaeIII	GGCC	2 cut(s)	320, 480
Hin1II	CATG	3 cut(s)	158, 217, 236
HincII	GTYRAC	2 cut(s)	199, 364
HindII	GTYRAC	2 cut(s)	199, 364
HinfI	GANTC	1 cut(s)	259
Hpy166II	GTNNAC	4 cut(s)	169, 199, 268, 364
Hpy188I	TCNGA	4 cut(s)	45, 54, 258, 536
Hpy188III	TCNNGA	1 cut(s)	491
Hpy8I	GTNNAC	4 cut(s)	169, 199, 268, 364
HpyAV	CCTTC	2 cut(s)	497, 531
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	5 cut(s)	4, 134, 338, 380, 427
HpyF10VI	GCNNNNNNNGC	4 cut(s)	155, 317, 407, 428
HpyF3I	CTNAG	2 cut(s)	44, 442
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	3 cut(s)	158, 217, 236
Kzo9I	GATC	1 cut(s)	531
LmnI	GCTCC	2 cut(s)	515, 568
LpnPI	CCDG	7 cut(s)	12, 261, 366, 401, 413, 462, 504
LweI	GCATC	2 cut(s)	298, 484
MaeI	CTAG	2 cut(s)	263, 525
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	2 cut(s)	271, 347
MalI	GATC	1 cut(s)	533
MboI	GATC	1 cut(s)	531
MboII	GAAGA	5 cut(s)	32, 79, 221, 317, 369
MluCI	AATT	6 cut(s)	102, 128, 178, 237, 293, 546
MlyI	GAGTC	1 cut(s)	268
MnlI	CCTC	3 cut(s)	15, 88, 187
MseI	TTAA	3 cut(s)	111, 225, 564
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	4 cut(s)	155, 317, 407, 428
NdeII	GATC	1 cut(s)	531
NlaIII	CATG	3 cut(s)	158, 217, 236
NmuCI	GTSAC	1 cut(s)	347
NspI	RCATGY	1 cut(s)	158
PkrI	GCNGC	1 cut(s)	64
PleI	GAGTC	1 cut(s)	267
PpsI	GAGTC	1 cut(s)	267
Ppu21I	YACGTR	1 cut(s)	271
PspPI	GGNCC	1 cut(s)	318
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
SaqAI	TTAA	3 cut(s)	111, 225, 564
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	1 cut(s)	531
Sau96I	GGNCC	1 cut(s)	318
SchI	GAGTC	1 cut(s)	268
SetI	ASST	7 cut(s)	26, 80, 198, 213, 273, 420, 448
SfaNI	GCATC	2 cut(s)	298, 484
SnaBI	TACGTA	1 cut(s)	271
SpeI	ACTAGT	1 cut(s)	524
Sse9I	AATT	6 cut(s)	102, 128, 178, 237, 293, 546
SsiI	CCGC	1 cut(s)	62
SspMI	CTAG	2 cut(s)	263, 525
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	1 cut(s)	377
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	3 cut(s)	90, 303, 490
TasI	AATT	6 cut(s)	102, 128, 178, 237, 293, 546
TauI	GCSGC	1 cut(s)	65
Tru1I	TTAA	3 cut(s)	111, 225, 564
Tru9I	TTAA	3 cut(s)	111, 225, 564
TseFI	GTSAC	1 cut(s)	347
Tsp45I	GTSAC	1 cut(s)	347
TspDTI	ATGAA	1 cut(s)	221
XapI	RAATTY	2 cut(s)	102, 293
XceI	RCATGY	1 cut(s)	158
XmiI	GTMKAC	1 cut(s)	168
XspI	CTAG	2 cut(s)	263, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.