Rh6DG152400

Isovaleryl-CoA dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0006675
Physical Location & Seq
Reverse (-)
22350611 .. 22352213
1603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG152400.1

Sequence Viewer

Length: 234 bp
ATGGAGGAATATGGAGGGCTGGGTCTTGGCTACTTGTATCACTGCATTGCTATGGAAGAAATAAGCCGTGCTTCAGGATCTGTTGGACTATCATTTGGTGCCCATTCCAATGTGTGCATTAATCAATTGGTGAGGCATGGAAATCCTACTCAGAAAGAGAAGTATTTCCCAAAGGTTGTTTACGCAAAAAGGGACATATGCGGGCTCAAAGGGAATCACAACATTCATCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0003853 GO:0003995 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006139 GO:0006163 GO:0006195 GO:0006520 GO:0006551 GO:0006552 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008470 GO:0009056 GO:0009058 GO:0009063 GO:0009081 GO:0009083 GO:0009109 GO:0009117 GO:0009150 GO:0009154 GO:0009166 GO:0009259 GO:0009261 GO:0009987 GO:0016054 GO:0016491 GO:0016627 GO:0017076 GO:0018130 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019752 GO:0030554 GO:0031974 GO:0032553 GO:0032555 GO:0032559 GO:0033865 GO:0033869 GO:0033875 GO:0034031 GO:0034032 GO:0034034 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0035337 GO:0035383 GO:0035639 GO:0036094 GO:0036115 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044273 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046434 GO:0046483 GO:0046700 GO:0051186 GO:0051187 GO:0055086 GO:0055114 GO:0070013 GO:0071704 GO:0072521 GO:0072523 GO:0097159 GO:0097367 GO:1901135 GO:1901136 GO:1901265 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901568 GO:1901569 GO:1901575 GO:1901576 GO:1901605 GO:1901606 GO:1902189 GO:1902190 GO:1902192 GO:1902195 GO:1902196 GO:1902198
KEGG Pathways
Metabolic & Signaling
ko00280 ko01100 map00280 map01100
Pfam Domains
Protein Families
Acyl-CoA_dh_1 Acyl-CoA_dh_M Acyl-CoA_dh_N

Protein Analysis

77

Amino Acids

8.55

Weight (kDa)

8.51

Isoelectric Point (pI)

33.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyl-CoA_dh_N PF02771 2 - 60 1.3e-19 Acyl-CoA dehydrogenase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 98
AciI CCGC 1 cut(s) 201
AclWI GGATC 1 cut(s) 85
AcuI CTGAAG 1 cut(s) 57
AlwI GGATC 1 cut(s) 85
AlwNI CAGNNNCTG 1 cut(s) 80
AseI ATTAAT 1 cut(s) 120
Asp700I GAANNNNTTC 1 cut(s) 164
AsuHPI GGTGA 1 cut(s) 142
BaeGI GKGCMC 1 cut(s) 103
BanI GGYRCC 1 cut(s) 98
BanII GRGCYC 1 cut(s) 207
BceAI ACGGC 1 cut(s) 51
BmiI GGNNCC 1 cut(s) 100
Bse3DI GCAATG 1 cut(s) 45
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 164
BseSI GKGCMC 1 cut(s) 103
BseYI CCCAGC 1 cut(s) 19
BshNI GGYRCC 1 cut(s) 98
BslFI GGGAC 1 cut(s) 206
BsmFI GGGAC 1 cut(s) 206
Bsp1286I GDGCHC 2 cut(s) 103, 207
Bsp143I GATC 1 cut(s) 77
BspACI CCGC 1 cut(s) 201
BspCNI CTCAG 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 100
BspPI GGATC 1 cut(s) 85
BspT107I GGYRCC 1 cut(s) 98
BsrDI GCAATG 1 cut(s) 45
BssMI GATC 1 cut(s) 77
BstC8I GCNNGC 1 cut(s) 203
BstDEI CTNAG 1 cut(s) 150
BstKTI GATC 1 cut(s) 80
BstMBI GATC 1 cut(s) 77
BstSLI GKGCMC 1 cut(s) 103
BstX2I RGATCY 1 cut(s) 77
BstYI RGATCY 1 cut(s) 77
BtsI GCAGTG 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 40
Cac8I GCNNGC 1 cut(s) 203
CaiI CAGNNNCTG 1 cut(s) 80
CviAII CATG 1 cut(s) 137
CviJI RGCY 4 cut(s) 19, 30, 66, 205
CviKI_1 RGCY 4 cut(s) 19, 30, 66, 205
DdeI CTNAG 1 cut(s) 150
DpnI GATC 1 cut(s) 79
DpnII GATC 1 cut(s) 77
Eco24I GRGCYC 1 cut(s) 207
Eco57I CTGAAG 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 207
FaeI CATG 1 cut(s) 140
FaiI YATR 5 cut(s) 12, 53, 138, 197, 199
FalI AAGNNNNNCTT 2 cut(s) 55, 87
FaqI GGGAC 1 cut(s) 206
FatI CATG 1 cut(s) 136
FauI CCCGC 1 cut(s) 194
FauNDI CATATG 1 cut(s) 197
FriOI GRGCYC 1 cut(s) 207
GsaI CCCAGC 1 cut(s) 23
Hin1II CATG 1 cut(s) 140
HinfI GANTC 1 cut(s) 214
HphI GGTGA 1 cut(s) 142
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 1 cut(s) 153
Hpy188III TCNNGA 1 cut(s) 75
Hpy8I GTNNAC 1 cut(s) 181
HpyCH4V TGCA 2 cut(s) 45, 117
HpyF3I CTNAG 1 cut(s) 150
Hsp92II CATG 1 cut(s) 140
Kzo9I GATC 1 cut(s) 77
LpnPI CCDG 2 cut(s) 5, 60
MalI GATC 1 cut(s) 79
MboI GATC 1 cut(s) 77
MboII GAAGA 1 cut(s) 68
MfeI CAATTG 1 cut(s) 125
MflI RGATCY 1 cut(s) 77
MhlI GDGCHC 2 cut(s) 103, 207
MluCI AATT 1 cut(s) 125
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 2 cut(s) 8, 126
MroXI GAANNNNTTC 1 cut(s) 164
MseI TTAA 1 cut(s) 120
MslI CAYNNNNRTG 2 cut(s) 50, 108
MunI CAATTG 1 cut(s) 125
NdeI CATATG 1 cut(s) 197
NdeII GATC 1 cut(s) 77
NlaIII CATG 1 cut(s) 140
NlaIV GGNNCC 1 cut(s) 100
PdmI GAANNNNTTC 1 cut(s) 164
PfeI GAWTC 1 cut(s) 214
PshBI ATTAAT 1 cut(s) 120
PspFI CCCAGC 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 100
PstNI CAGNNNCTG 1 cut(s) 80
PsuI RGATCY 1 cut(s) 77
RseI CAYNNNNRTG 2 cut(s) 50, 108
SaqAI TTAA 1 cut(s) 120
Sau3AI GATC 1 cut(s) 77
SduI GDGCHC 2 cut(s) 103, 207
SetI ASST 1 cut(s) 177
SgeI CNNG 7 cut(s) 32, 38, 46, 80, 87, 149, 214
SmiMI CAYNNNNRTG 2 cut(s) 50, 108
Sse9I AATT 1 cut(s) 125
SsiI CCGC 1 cut(s) 201
TasI AATT 1 cut(s) 125
TfiI GAWTC 1 cut(s) 214
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TscAI CASTG 1 cut(s) 47
TspDTI ATGAA 1 cut(s) 215
TspRI CASTG 1 cut(s) 47
VspI ATTAAT 1 cut(s) 120
XmnI GAANNNNTTC 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.