Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004660

Physical Location & Seq

Genomic Coordinates Forward (+)

16867033 .. 16868926

Gene Structure 1894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G45870.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGAGAGTACGGTGGAAAGAGAGGCGTGGAAAGCTCACGTGGCGATGATCGGTGTGCAATTGTTCAACGGAGGATATCATGTCATTACCAAAGTGGCTCTCAACGTTGGTGTAAACCAACTTGTCTTCTGTGTCTTTCGTGATCTCATTGCTCTCTCCATTCTTGCTCCTCTTGCTTATATCCGTGATAAGAGAACAAGACCTCCTTTGAATCGACAGTTTCTCTTAGCTTTCTTCTTCCTTGGTTTAACAGGGATATTTGGTAATCAGCTTTTGTTCCTCATTGGTCTGAATTACACCAATCCAACTTATGCTGCAGCCATTCAGCCGTCGATCCCGGTTTTTACTTTCATCTTGGCTCTCATTATGGGAACAGAGAGACTGAATTTATTCAAGCTAGAAGGTCAAGCTAAGGTAGGAGGCACACTGATTTGTGTCGCTGGGGCGGTGCTGATGGTTTTGTTTCGTGGACTGGCTTTGTTTGGGGAAACAGAGGCTGAGTCCTTGGGTCATGGTGAATCAAGACACACTGAAACATCTGGACACTTCATGTCTGGCTTTTTTAATGGACTTGGGCGATGGAATTTGGGAGTTTTGTGTTTGATTGGGAATTGCACTTGCATGGCTGCTTTTCTTGCTATTCAGGCTCCGGTCTTAAAGAAGTATCCGGCGAATCTTTCAGTCACAGCATACTCGTATTTCTTTGGGACCATGTTTATGGTGACATCTGCTTTTTTCATGACTAATGAGTCGACGAACTGGAGTCTCACAAGATCCGAGTTCTTTGCAGTTGTCTACGCAGGAGTAATCGCGTCTGCTCTCAACTATGGTCTCTTGACATGGTCAAATAAGATCTTGGGTCCTTCCTTGGTTGCTCTCTATAATCCTCTTCAACCCGCAGCCTCAGCTTTCTTGTCCAGAATCTTCCTTGGAAGCCCTATCTACTTGGGGAGCATTTTAGGCGGATGTGCAATCATAGCAGGTCTTTATAGTGTCACCTGGGCATCTTACAAAGAAAAGAAAGCGGCAGCAGCAATGGCTGTGATCCCGATCACCTCAAAGGAAGCTGAACCCTTGATCTACAAGGACCATAAAAACAAACCAATAGGACATCTATTCACAAAATCTCCCATCTCTTCACCAAAATCCGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

385

Amino Acids

41.88

Weight (kDa)

9.21

Isoelectric Point (pI)

30.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT4G19185 AT4G19185
fragaria_vesca	FvH4_2g37290 FvH4_2g37290
malus_domestica	MD08G1001200.v1.1
prunus_persica	Prupe.1G353200_v2.0.a1 Prupe.1G353200_v2.0.a1 Prupe.1G353200_v2.0.a1 Prupe.1G353200_v2.0.a1
pyrus_communis	pycom08g00050 pycom15g00010
rosa_chinensis	RchiOBHm_Chr6g0304411
rosa_laevigata	RLG00000010981
rosa_multiflora	Rmu_co8418059.1_g000001 Rmu_ssc0000218.1_g000048
rosa_roxburghii	Rroxscaffold_7G00163760
rosa_rugosa	Rorug06G0331300
rosa_samantha	Rh6AG444200 Rh6BG458200 Rh6CG457000 Rh6DG443700
rosa_wichuraiana	Rw6G038560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	748
Acc36I	ACCTGC	1 cut(s)	971
AccI	GTMKAC	2 cut(s)	752, 795
AccII	CGCG	1 cut(s)	812
AciI	CCGC	4 cut(s)	446, 897, 963, 1025
AclI	AACGTT	1 cut(s)	105
AclWI	GGATC	3 cut(s)	328, 768, 1039
AcsI	RAATTY	2 cut(s)	385, 583
AcvI	CACGTG	1 cut(s)	40
AfaI	GTAC	1 cut(s)	10
AgsI	TTSAA	4 cut(s)	67, 211, 394, 893
AjnI	CCWGG	1 cut(s)	998
AloI	GAACNNNNNNTCC	2 cut(s)	187, 219
AluBI	AGCT	7 cut(s)	35, 230, 271, 397, 410, 908, 1067
AluI	AGCT	7 cut(s)	35, 230, 271, 397, 410, 908, 1067
Alw26I	GTCTC	3 cut(s)	373, 770, 836
AlwI	GGATC	3 cut(s)	328, 768, 1039
AlwNI	CAGNNNCTG	1 cut(s)	497
ApeKI	GCWGC	6 cut(s)	314, 317, 626, 899, 1028, 1031
ApoI	RAATTY	2 cut(s)	385, 583
Asp700I	GAANNNNTTC	1 cut(s)	389
AspS9I	GGNCC	3 cut(s)	708, 860, 1087
AsuC2I	CCSGG	1 cut(s)	338
AsuHPI	GGTGA	5 cut(s)	527, 733, 988, 1045, 1131
AvaII	GGWCC	3 cut(s)	708, 860, 1087
BbrPI	CACGTG	1 cut(s)	40
BbsI	GAAGAC	1 cut(s)	118
BbvCI	CCTCAGC	1 cut(s)	904
BbvI	GCAGC	6 cut(s)	301, 329, 613, 911, 1040, 1043
BccI	CCATC	3 cut(s)	448, 573, 1139
BceAI	ACGGC	1 cut(s)	313
BcgI	CGANNNNNNTGC	2 cut(s)	767, 801
BciT130I	CCWGG	1 cut(s)	1000
BciVI	GTATCC	1 cut(s)	675
BcnI	CCSGG	1 cut(s)	338
BcoDI	GTCTC	3 cut(s)	373, 770, 836
BfaI	CTAG	1 cut(s)	398
BfmI	CTRYAG	1 cut(s)	315
BfuAI	ACCTGC	1 cut(s)	971
BfuI	GTATCC	1 cut(s)	675
BglII	AGATCT	1 cut(s)	852
BisI	GCNGC	7 cut(s)	315, 318, 627, 900, 1026, 1029, 1032
BlsI	GCNGC	7 cut(s)	316, 319, 628, 901, 1027, 1030, 1033
Bme1390I	CCNGG	2 cut(s)	338, 1000
Bme18I	GGWCC	3 cut(s)	708, 860, 1087
BmgT120I	GGNCC	3 cut(s)	708, 860, 1087
BmiI	GGNNCC	3 cut(s)	648, 709, 861
BmrFI	CCNGG	2 cut(s)	338, 1000
BmsI	GCATC	1 cut(s)	1013
BpiI	GAAGAC	1 cut(s)	118
BpmI	CTGGAG	1 cut(s)	781
Bpu10I	CCTNAGC	2 cut(s)	411, 904
BpuMI	CCSGG	1 cut(s)	338
BsaAI	YACGTR	1 cut(s)	40
BsaBI	GATNNNNATC	1 cut(s)	1049
BsaI	GGTCTC	1 cut(s)	836
BsaJI	CCNNGG	5 cut(s)	241, 504, 867, 928, 999
BsaWI	WCCGGW	1 cut(s)	649
BsaXI	ACNNNNNCTCC	4 cut(s)	187, 217, 1111, 1141
Bse1I	ACTGG	2 cut(s)	477, 764
Bse3DI	GCAATG	2 cut(s)	147, 1041
Bse8I	GATNNNNATC	1 cut(s)	1049
BseBI	CCWGG	1 cut(s)	1000
BseDI	CCNNGG	5 cut(s)	241, 504, 867, 928, 999
BseGI	GGATG	1 cut(s)	971
BseJI	GATNNNNATC	1 cut(s)	1049
BseMI	GCAATG	2 cut(s)	147, 1041
BseMII	CTCAG	2 cut(s)	489, 918
BseNI	ACTGG	2 cut(s)	477, 764
BseRI	GAGGAG	1 cut(s)	159
BseXI	GCAGC	6 cut(s)	301, 329, 613, 911, 1040, 1043
BseYI	CCCAGC	1 cut(s)	440
Bsh1236I	CGCG	1 cut(s)	812
BsiSI	CCGG	3 cut(s)	338, 650, 668
BslFI	GGGAC	1 cut(s)	721
BsmAI	GTCTC	3 cut(s)	373, 770, 836
BsmFI	GGGAC	1 cut(s)	721
Bso31I	GGTCTC	1 cut(s)	836
Bsp143I	GATC	8 cut(s)	48, 142, 333, 773, 852, 1044, 1050, 1077
BspACI	CCGC	4 cut(s)	446, 897, 963, 1025
BspCNI	CTCAG	2 cut(s)	490, 917
BspFNI	CGCG	1 cut(s)	812
BspHI	TCATGA	1 cut(s)	738
BspLI	GGNNCC	3 cut(s)	648, 709, 861
BspMAI	CTGCAG	1 cut(s)	319
BspMI	ACCTGC	1 cut(s)	971
BspPI	GGATC	3 cut(s)	328, 768, 1039
BspTNI	GGTCTC	1 cut(s)	836
BsrDI	GCAATG	2 cut(s)	147, 1041
BsrI	ACTGG	2 cut(s)	477, 764
BssECI	CCNNGG	5 cut(s)	241, 504, 867, 928, 999
BssMI	GATC	8 cut(s)	48, 142, 333, 773, 852, 1044, 1050, 1077
BssT1I	CCWWGG	4 cut(s)	241, 504, 867, 928
Bst2UI	CCWGG	1 cut(s)	1000
Bst4CI	ACNGT	2 cut(s)	13, 219
Bst6I	CTCTTC	2 cut(s)	894, 1141
BstBAI	YACGTR	1 cut(s)	40
BstDEI	CTNAG	4 cut(s)	226, 411, 498, 904
BstF5I	GGATG	1 cut(s)	971
BstFNI	CGCG	1 cut(s)	812
BstKTI	GATC	8 cut(s)	51, 145, 336, 776, 855, 1047, 1053, 1080
BstMAI	GTCTC	3 cut(s)	373, 770, 836
BstMBI	GATC	8 cut(s)	48, 142, 333, 773, 852, 1044, 1050, 1077
BstNI	CCWGG	1 cut(s)	1000
BstSCI	CCNGG	2 cut(s)	336, 998
BstSFI	CTRYAG	1 cut(s)	315
BstUI	CGCG	1 cut(s)	812
BstV1I	GCAGC	6 cut(s)	301, 329, 613, 911, 1040, 1043
BstV2I	GAAGAC	1 cut(s)	118
BstX2I	RGATCY	2 cut(s)	773, 852
BstXI	CCANNNNNNTGG	1 cut(s)	718
BstYI	RGATCY	2 cut(s)	773, 852
BsuI	GTATCC	1 cut(s)	675
BtgZI	GCGATG	2 cut(s)	59, 592
BtsCI	GGATG	1 cut(s)	971
BtsIMutI	CAGTG	2 cut(s)	425, 528
BveI	ACCTGC	1 cut(s)	971
CaiI	CAGNNNCTG	1 cut(s)	497
CciI	TCATGA	1 cut(s)	738
Cfr13I	GGNCC	3 cut(s)	708, 860, 1087
CseI	GACGC	1 cut(s)	801
Csp6I	GTAC	1 cut(s)	9
CviAII	CATG	7 cut(s)	80, 512, 550, 622, 712, 739, 840
CviQI	GTAC	1 cut(s)	9
DdeI	CTNAG	4 cut(s)	226, 411, 498, 904
DpnI	GATC	8 cut(s)	50, 144, 335, 775, 854, 1046, 1052, 1079
DpnII	GATC	8 cut(s)	48, 142, 333, 773, 852, 1044, 1050, 1077
DrdI	GACNNNNNNGTC	1 cut(s)	748
DseDI	GACNNNNNNGTC	1 cut(s)	748
Eam1104I	CTCTTC	2 cut(s)	894, 1141
EarI	CTCTTC	2 cut(s)	894, 1141
EciI	GGCGGA	1 cut(s)	978
Eco130I	CCWWGG	4 cut(s)	241, 504, 867, 928
Eco31I	GGTCTC	1 cut(s)	836
Eco32I	GATATC	1 cut(s)	77
Eco47I	GGWCC	3 cut(s)	708, 860, 1087
Eco72I	CACGTG	1 cut(s)	40
EcoO109I	RGGNCCY	1 cut(s)	860
EcoRII	CCWGG	1 cut(s)	998
EcoRV	GATATC	1 cut(s)	77
EcoT14I	CCWWGG	4 cut(s)	241, 504, 867, 928
ErhI	CCWWGG	4 cut(s)	241, 504, 867, 928
FaeI	CATG	7 cut(s)	83, 515, 553, 625, 715, 742, 843
FalI	AAGNNNNNCTT	2 cut(s)	190, 222
FaqI	GGGAC	1 cut(s)	721
FatI	CATG	7 cut(s)	79, 511, 549, 621, 711, 738, 839
FauI	CCCGC	1 cut(s)	904
FblI	GTMKAC	2 cut(s)	752, 795
Fnu4HI	GCNGC	7 cut(s)	315, 318, 627, 900, 1026, 1029, 1032
FokI	GGATG	1 cut(s)	978
Fsp4HI	GCNGC	7 cut(s)	315, 318, 627, 900, 1026, 1029, 1032
FspBI	CTAG	1 cut(s)	398
GluI	GCNGC	7 cut(s)	315, 318, 627, 900, 1026, 1029, 1032
GsaI	CCCAGC	1 cut(s)	444
GsuI	CTGGAG	1 cut(s)	781
HapII	CCGG	3 cut(s)	338, 650, 668
HgaI	GACGC	1 cut(s)	801
Hin1II	CATG	7 cut(s)	83, 515, 553, 625, 715, 742, 843
HincII	GTYRAC	1 cut(s)	753
HindII	GTYRAC	1 cut(s)	753
HinfI	GANTC	7 cut(s)	211, 500, 518, 673, 749, 763, 921
HpaII	CCGG	3 cut(s)	338, 650, 668
HphI	GGTGA	5 cut(s)	527, 733, 988, 1045, 1131
Hpy166II	GTNNAC	4 cut(s)	115, 470, 753, 796
Hpy188I	TCNGA	3 cut(s)	291, 778, 1150
Hpy188III	TCNNGA	7 cut(s)	140, 522, 540, 739, 835, 918, 1048
Hpy8I	GTNNAC	4 cut(s)	115, 470, 753, 796
Hpy99I	CGWCG	2 cut(s)	334, 757
HpyAV	CCTTC	2 cut(s)	395, 873
HpyCH4III	ACNGT	2 cut(s)	13, 219
HpyCH4IV	ACGT	2 cut(s)	39, 105
HpyCH4V	TGCA	6 cut(s)	58, 317, 615, 621, 788, 971
HpyF3I	CTNAG	4 cut(s)	226, 411, 498, 904
HpySE526I	ACGT	2 cut(s)	39, 105
Hsp92II	CATG	7 cut(s)	83, 515, 553, 625, 715, 742, 843
Kzo9I	GATC	8 cut(s)	48, 142, 333, 773, 852, 1044, 1050, 1077
LmnI	GCTCC	3 cut(s)	172, 652, 951
Lsp1109I	GCAGC	6 cut(s)	301, 329, 613, 911, 1040, 1043
LweI	GCATC	1 cut(s)	1013
MaeI	CTAG	1 cut(s)	398
MaeII	ACGT	2 cut(s)	39, 105
MaeIII	GTNAC	3 cut(s)	682, 721, 994
MalI	GATC	8 cut(s)	50, 144, 335, 775, 854, 1046, 1052, 1079
MboI	GATC	8 cut(s)	48, 142, 333, 773, 852, 1044, 1050, 1077
MboII	GAAGA	6 cut(s)	118, 226, 229, 881, 916, 1128
MfeI	CAATTG	1 cut(s)	59
MflI	RGATCY	2 cut(s)	773, 852
MluCI	AATT	5 cut(s)	59, 292, 385, 583, 610
MlyI	GAGTC	3 cut(s)	509, 758, 772
MmeI	TCCRAC	1 cut(s)	329
MroXI	GAANNNNTTC	1 cut(s)	389
MseI	TTAA	3 cut(s)	248, 564, 656
MslI	CAYNNNNRTG	2 cut(s)	620, 716
MspI	CCGG	3 cut(s)	338, 650, 668
MspR9I	CCNGG	2 cut(s)	338, 1000
MunI	CAATTG	1 cut(s)	59
MvaI	CCWGG	1 cut(s)	1000
MvnI	CGCG	1 cut(s)	812
NciI	CCSGG	1 cut(s)	338
NdeII	GATC	8 cut(s)	48, 142, 333, 773, 852, 1044, 1050, 1077
NlaIII	CATG	7 cut(s)	83, 515, 553, 625, 715, 742, 843
NlaIV	GGNNCC	3 cut(s)	648, 709, 861
NmuCI	GTSAC	3 cut(s)	682, 721, 994
PagI	TCATGA	1 cut(s)	738
PdmI	GAANNNNTTC	1 cut(s)	389
PfeI	GAWTC	4 cut(s)	211, 518, 673, 921
PflFI	GACNNNGTC	1 cut(s)	841
PkrI	GCNGC	7 cut(s)	316, 319, 628, 901, 1027, 1030, 1033
PleI	GAGTC	3 cut(s)	508, 757, 771
PmaCI	CACGTG	1 cut(s)	40
PmlI	CACGTG	1 cut(s)	40
PpsI	GAGTC	3 cut(s)	508, 757, 771
Ppu21I	YACGTR	1 cut(s)	40
PpuMI	RGGWCCY	1 cut(s)	860
Psp1406I	AACGTT	1 cut(s)	105
Psp5II	RGGWCCY	1 cut(s)	860
Psp6I	CCWGG	1 cut(s)	998
PspCI	CACGTG	1 cut(s)	40
PspFI	CCCAGC	1 cut(s)	440
PspGI	CCWGG	1 cut(s)	998
PspN4I	GGNNCC	3 cut(s)	648, 709, 861
PspPI	GGNCC	3 cut(s)	708, 860, 1087
PspPPI	RGGWCCY	1 cut(s)	860
PstI	CTGCAG	1 cut(s)	319
PstNI	CAGNNNCTG	1 cut(s)	497
PsuI	RGATCY	2 cut(s)	773, 852
PsyI	GACNNNGTC	1 cut(s)	841
RsaI	GTAC	1 cut(s)	10
RsaNI	GTAC	1 cut(s)	9
RseI	CAYNNNNRTG	2 cut(s)	620, 716
SalI	GTCGAC	1 cut(s)	751
SaqAI	TTAA	3 cut(s)	248, 564, 656
SatI	GCNGC	7 cut(s)	315, 318, 627, 900, 1026, 1029, 1032
Sau3AI	GATC	8 cut(s)	48, 142, 333, 773, 852, 1044, 1050, 1077
Sau96I	GGNCC	3 cut(s)	708, 860, 1087
SchI	GAGTC	3 cut(s)	509, 758, 772
ScrFI	CCNGG	2 cut(s)	338, 1000
SfaNI	GCATC	1 cut(s)	1013
SfcI	CTRYAG	1 cut(s)	315
SinI	GGWCC	3 cut(s)	708, 860, 1087
SmiMI	CAYNNNNRTG	2 cut(s)	620, 716
Sse9I	AATT	5 cut(s)	59, 292, 385, 583, 610
SsiI	CCGC	4 cut(s)	446, 897, 963, 1025
SspMI	CTAG	1 cut(s)	398
StyD4I	CCNGG	2 cut(s)	336, 998
StyI	CCWWGG	4 cut(s)	241, 504, 867, 928
TaaI	ACNGT	2 cut(s)	13, 219
TaiI	ACGT	2 cut(s)	42, 108
TaqI	TCGA	3 cut(s)	214, 332, 752
TasI	AATT	5 cut(s)	59, 292, 385, 583, 610
TauI	GCSGC	1 cut(s)	1028
TfiI	GAWTC	4 cut(s)	211, 518, 673, 921
Tru1I	TTAA	3 cut(s)	248, 564, 656
Tru9I	TTAA	3 cut(s)	248, 564, 656
TscAI	CASTG	2 cut(s)	432, 535
TseFI	GTSAC	3 cut(s)	682, 721, 994
TseI	GCWGC	6 cut(s)	314, 317, 626, 899, 1028, 1031
Tsp45I	GTSAC	3 cut(s)	682, 721, 994
TspDTI	ATGAA	3 cut(s)	340, 538, 727
TspGWI	ACGGA	2 cut(s)	84, 173
TspRI	CASTG	2 cut(s)	432, 535
Tth111I	GACNNNGTC	1 cut(s)	841
VpaK11BI	GGWCC	3 cut(s)	708, 860, 1087
XapI	RAATTY	2 cut(s)	385, 583
XmiI	GTMKAC	2 cut(s)	752, 795
XmnI	GAANNNNTTC	1 cut(s)	389
XspI	CTAG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.