Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004660

Physical Location & Seq

Genomic Coordinates Forward (+)

5809229 .. 5813987

Gene Structure 4759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010981

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGTCAGCAGTAGTGGCTTCTGCCTCAGCAGCAGGTGTTGCAGTTGGAGGAGATGTATGGAAGGCACACGCGGCCATGGCACTGGTTCAGCTCATCAACGGAGGCTATCATGTAATTACCAAAGTAGCCCTCAATGTGGGCATCAACCAGCTTGTCTTTTGTGTCTACAGAGACCTTCTTGCTCTGGTCATTCTTGCTCCAATCGCCTATGTCCGTGAAAAACGGATTCGACAACCAATGAATAGGCGCCTCTTCATGACCTTCTTCTTCCTTGGGCTAACTGGAATTTTTGGCAACCAGCTTTTGTTTCTTATTGGTCTTGGCTACACAAATCCAACTTATGCTGCGGCCATACAACCTGCTATCCCTGTTTTTACTTTTATCCTGGCAATAAGTGCCAGAGGTCAACCAGAGCCTGTTGGGTGGTTGATGTCCTCTTTCCTGGAATTTGGACTTGATCATTTCCATATCGGAGTTTTATGCTTAATAGGGAACTGCATGTGCATGGCAGCTTTCCTAGCCATTCAGGCTCCACTTTTGAAAAGATATCCTTCCAATCTGTCAGTCACTGCATATTCATACTTATTTGGTGCTTTATTCATGGTGGTGACTGCATTATTTATGACCAATGAATCAACAGACTGGACGTTGACACAGTCCGAGCTTTTTGCAGTTATTTACTCTGGAATTATTGCATCTGCCCTTAATTATGGACTCCTGACATGGTGCAATAAGATCTTGGGGCCTGCTTTGGTTGCTCTTTACAATCCACTTCAACCTGCAGCTTCAGCCTTTTTGTCAAGAGTTTTCCTAGGGAGCCCTATCTATTTGGGAAGTGTTGCAGGGGGTTTACTAATTATAGCTGGTCTTTATGGGGTCACTTGGGCCTCCTTTAGAGAAAGACAAGCAGCTTTGGGTGTTATACCGCCGATTGCTCGGGTCTCCGAACCCCTCATCCACAAAGATGCAGCAATTAACAAGACACCATTCCACAGAGTACACGTTTTACCAAAATCATCGTCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

343

Amino Acids

36.93

Weight (kDa)

9.32

Isoelectric Point (pI)

35.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	24 - 133	3.5e-13	EamA-like transporter family
EamA	PF00892	157 - 294	7.6e-15	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT4G19185 AT4G19185
fragaria_vesca	FvH4_2g37290 FvH4_2g37290
malus_domestica	MD08G1001200.v1.1
prunus_persica	Prupe.1G353200_v2.0.a1 Prupe.1G353200_v2.0.a1 Prupe.1G353200_v2.0.a1 Prupe.1G353200_v2.0.a1
pyrus_communis	pycom08g00050 pycom15g00010
rosa_chinensis	RchiOBHm_Chr6g0304411
rosa_laevigata	RLG00000010981
rosa_multiflora	Rmu_co8418059.1_g000001 Rmu_ssc0000218.1_g000048
rosa_roxburghii	Rroxscaffold_7G00163760
rosa_rugosa	Rorug06G0331300
rosa_samantha	Rh6AG444200 Rh6BG458200 Rh6CG457000 Rh6DG443700
rosa_wichuraiana	Rw6G038560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	23
Acc36I	ACCTGC	3 cut(s)	23, 367, 787
AccB1I	GGYRCC	1 cut(s)	246
AccI	GTMKAC	1 cut(s)	165
AccII	CGCG	1 cut(s)	71
AciI	CCGC	3 cut(s)	71, 347, 926
AcoI	YGGCCR	2 cut(s)	72, 348
AcsI	RAATTY	2 cut(s)	285, 446
AcuI	CTGAAG	1 cut(s)	771
AcyI	GRCGYC	1 cut(s)	247
AfaI	GTAC	1 cut(s)	999
AfiI	CCNNNNNNNGG	1 cut(s)	136
AflIII	ACRYGT	1 cut(s)	1000
AgsI	TTSAA	2 cut(s)	541, 776
AjnI	CCWGG	2 cut(s)	384, 441
AloI	GAACNNNNNNTCC	2 cut(s)	939, 971
AluBI	AGCT	8 cut(s)	91, 151, 301, 512, 664, 785, 863, 911
AluI	AGCT	8 cut(s)	91, 151, 301, 512, 664, 785, 863, 911
Alw26I	GTCTC	2 cut(s)	165, 946
AlwNI	CAGNNNCTG	2 cut(s)	416, 569
Ama87I	CYCGRG	1 cut(s)	936
AoxI	GGCC	4 cut(s)	72, 348, 743, 885
ApeKI	GCWGC	6 cut(s)	29, 344, 509, 782, 908, 968
ApoI	RAATTY	2 cut(s)	285, 446
ArsI	GACNNNNNNTTYG	1 cut(s)	1004
AspA2I	CCTAGG	1 cut(s)	811
AspLEI	GCGC	1 cut(s)	249
AspS9I	GGNCC	2 cut(s)	743, 885
AsuHPI	GGTGA	1 cut(s)	619
AvaI	CYCGRG	1 cut(s)	936
AvrII	CCTAGG	1 cut(s)	811
BanI	GGYRCC	1 cut(s)	246
BanII	GRGCYC	1 cut(s)	821
BbvCI	CCTCAGC	1 cut(s)	25
BbvI	GCAGC	6 cut(s)	41, 331, 521, 794, 920, 980
BcgI	CGANNNNNNTGC	2 cut(s)	650, 684
BciT130I	CCWGG	2 cut(s)	386, 443
BclI	TGATCA	1 cut(s)	457
BcoDI	GTCTC	2 cut(s)	165, 946
BfaI	CTAG	2 cut(s)	518, 812
BfmI	CTRYAG	2 cut(s)	166, 780
BfoI	RGCGCY	1 cut(s)	250
BfuAI	ACCTGC	3 cut(s)	23, 367, 787
BglI	GCCNNNNNGGC	1 cut(s)	527
BglII	AGATCT	1 cut(s)	735
BisI	GCNGC	8 cut(s)	30, 72, 345, 348, 510, 783, 909, 969
BlnI	CCTAGG	1 cut(s)	811
BlsI	GCNGC	8 cut(s)	31, 73, 346, 349, 511, 784, 910, 970
Bme1390I	CCNGG	2 cut(s)	386, 443
BmeT110I	CYCGRG	1 cut(s)	936
BmgT120I	GGNCC	2 cut(s)	743, 885
BmiI	GGNNCC	4 cut(s)	248, 531, 744, 818
BmrFI	CCNGG	2 cut(s)	386, 443
BmsI	GCATC	3 cut(s)	150, 704, 955
Bpu10I	CCTNAGC	1 cut(s)	25
BsaHI	GRCGYC	1 cut(s)	247
BsaI	GGTCTC	2 cut(s)	165, 946
BsaJI	CCNNGG	3 cut(s)	75, 271, 811
BsaXI	ACNNNNNCTCC	2 cut(s)	39, 69
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse1I	ACTGG	3 cut(s)	87, 286, 647
BseBI	CCWGG	2 cut(s)	386, 443
BseDI	CCNNGG	3 cut(s)	75, 271, 811
BseGI	GGATG	1 cut(s)	954
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	3 cut(s)	87, 286, 647
BseRI	GAGGAG	1 cut(s)	63
BseXI	GCAGC	6 cut(s)	41, 331, 521, 794, 920, 980
Bsh1236I	CGCG	1 cut(s)	71
BshFI	GGCC	4 cut(s)	74, 350, 745, 887
BshNI	GGYRCC	1 cut(s)	246
BsiHKCI	CYCGRG	1 cut(s)	936
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmAI	GTCTC	2 cut(s)	165, 946
BsnI	GGCC	4 cut(s)	74, 350, 745, 887
Bso31I	GGTCTC	2 cut(s)	165, 946
BsoBI	CYCGRG	1 cut(s)	936
Bsp1286I	GDGCHC	1 cut(s)	821
Bsp143I	GATC	2 cut(s)	457, 735
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	3 cut(s)	71, 347, 926
BspANI	GGCC	4 cut(s)	74, 350, 745, 887
BspCNI	CTCAG	1 cut(s)	38
BspFNI	CGCG	1 cut(s)	71
BspHI	TCATGA	1 cut(s)	255
BspLI	GGNNCC	4 cut(s)	248, 531, 744, 818
BspMAI	CTGCAG	1 cut(s)	784
BspMI	ACCTGC	3 cut(s)	23, 367, 787
BspT107I	GGYRCC	1 cut(s)	246
BspTNI	GGTCTC	2 cut(s)	165, 946
BsrI	ACTGG	3 cut(s)	87, 286, 647
BssECI	CCNNGG	3 cut(s)	75, 271, 811
BssMI	GATC	2 cut(s)	457, 735
BssNI	GRCGYC	1 cut(s)	247
BssT1I	CCWWGG	3 cut(s)	75, 271, 811
Bst2UI	CCWGG	2 cut(s)	386, 443
Bst4CI	ACNGT	1 cut(s)	657
Bst6I	CTCTTC	1 cut(s)	257
BstACI	GRCGYC	1 cut(s)	247
BstAPI	GCANNNNNTGC	2 cut(s)	38, 395
BstC8I	GCNNGC	1 cut(s)	747
BstDEI	CTNAG	1 cut(s)	25
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	1 cut(s)	954
BstFNI	CGCG	1 cut(s)	71
BstH2I	RGCGCY	1 cut(s)	250
BstHHI	GCGC	1 cut(s)	249
BstKTI	GATC	2 cut(s)	460, 738
BstMAI	GTCTC	2 cut(s)	165, 946
BstMBI	GATC	2 cut(s)	457, 735
BstNI	CCWGG	2 cut(s)	386, 443
BstNSI	RCATGY	1 cut(s)	502
BstSCI	CCNGG	2 cut(s)	384, 441
BstSFI	CTRYAG	2 cut(s)	166, 780
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	6 cut(s)	41, 331, 521, 794, 920, 980
BstX2I	RGATCY	1 cut(s)	735
BstXI	CCANNNNNNTGG	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	735
BsuRI	GGCC	4 cut(s)	74, 350, 745, 887
BtgI	CCRYGG	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	954
BtsI	GCAGTG	1 cut(s)	567
BtsIMutI	CAGTG	2 cut(s)	80, 567
BveI	ACCTGC	3 cut(s)	23, 367, 787
Cac8I	GCNNGC	1 cut(s)	747
CaiI	CAGNNNCTG	2 cut(s)	416, 569
CciI	TCATGA	1 cut(s)	255
CfoI	GCGC	1 cut(s)	249
Cfr13I	GGNCC	2 cut(s)	743, 885
Csp6I	GTAC	1 cut(s)	998
CviAII	CATG	7 cut(s)	76, 110, 256, 499, 505, 601, 723
CviQI	GTAC	1 cut(s)	998
DdeI	CTNAG	1 cut(s)	25
DinI	GGCGCC	1 cut(s)	248
DpnI	GATC	2 cut(s)	459, 737
DpnII	GATC	2 cut(s)	457, 735
EaeI	YGGCCR	2 cut(s)	72, 348
Eam1104I	CTCTTC	1 cut(s)	257
EarI	CTCTTC	1 cut(s)	257
Eco130I	CCWWGG	3 cut(s)	75, 271, 811
Eco24I	GRGCYC	1 cut(s)	821
Eco31I	GGTCTC	2 cut(s)	165, 946
Eco32I	GATATC	1 cut(s)	548
Eco57I	CTGAAG	1 cut(s)	771
Eco88I	CYCGRG	1 cut(s)	936
EcoO109I	RGGNCCY	1 cut(s)	743
EcoRII	CCWGG	2 cut(s)	384, 441
EcoRV	GATATC	1 cut(s)	548
EcoT14I	CCWWGG	3 cut(s)	75, 271, 811
EcoT38I	GRGCYC	1 cut(s)	821
EgeI	GGCGCC	1 cut(s)	248
EheI	GGCGCC	1 cut(s)	248
ErhI	CCWWGG	3 cut(s)	75, 271, 811
FaeI	CATG	7 cut(s)	79, 113, 259, 502, 508, 604, 726
FalI	AAGNNNNNCTT	2 cut(s)	535, 567
FatI	CATG	7 cut(s)	75, 109, 255, 498, 504, 600, 722
FbaI	TGATCA	1 cut(s)	457
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	8 cut(s)	30, 72, 345, 348, 510, 783, 909, 969
FokI	GGATG	1 cut(s)	941
FriOI	GRGCYC	1 cut(s)	821
Fsp4HI	GCNGC	8 cut(s)	30, 72, 345, 348, 510, 783, 909, 969
FspBI	CTAG	2 cut(s)	518, 812
GlaI	GCGC	1 cut(s)	248
GluI	GCNGC	8 cut(s)	30, 72, 345, 348, 510, 783, 909, 969
HaeII	RGCGCY	1 cut(s)	250
HaeIII	GGCC	4 cut(s)	74, 350, 745, 887
HhaI	GCGC	1 cut(s)	249
Hin1I	GRCGYC	1 cut(s)	247
Hin1II	CATG	7 cut(s)	79, 113, 259, 502, 508, 604, 726
Hin6I	GCGC	1 cut(s)	247
HinP1I	GCGC	1 cut(s)	247
HincII	GTYRAC	2 cut(s)	407, 651
HindII	GTYRAC	2 cut(s)	407, 651
HinfI	GANTC	3 cut(s)	226, 632, 714
HphI	GGTGA	1 cut(s)	619
Hpy166II	GTNNAC	5 cut(s)	166, 407, 651, 851, 1000
Hpy188I	TCNGA	4 cut(s)	473, 661, 946, 1024
Hpy188III	TCNNGA	4 cut(s)	256, 684, 718, 801
Hpy8I	GTNNAC	5 cut(s)	166, 407, 651, 851, 1000
HpyAV	CCTTC	4 cut(s)	55, 185, 271, 561
HpyCH4III	ACNGT	1 cut(s)	657
HpyCH4IV	ACGT	2 cut(s)	647, 1002
HpyF3I	CTNAG	1 cut(s)	25
HpySE526I	ACGT	2 cut(s)	647, 1002
Hsp92I	GRCGYC	1 cut(s)	247
Hsp92II	CATG	7 cut(s)	79, 113, 259, 502, 508, 604, 726
HspAI	GCGC	1 cut(s)	247
KasI	GGCGCC	1 cut(s)	246
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	2 cut(s)	457, 735
LmnI	GCTCC	3 cut(s)	202, 535, 816
Lsp1109I	GCAGC	6 cut(s)	41, 331, 521, 794, 920, 980
LweI	GCATC	3 cut(s)	150, 704, 955
MaeI	CTAG	2 cut(s)	518, 812
MaeII	ACGT	2 cut(s)	647, 1002
MaeIII	GTNAC	3 cut(s)	565, 607, 877
MalI	GATC	2 cut(s)	459, 737
MboI	GATC	2 cut(s)	457, 735
MboII	GAAGA	3 cut(s)	244, 256, 259
MflI	RGATCY	1 cut(s)	735
MhlI	GDGCHC	1 cut(s)	821
MluCI	AATT	7 cut(s)	114, 285, 446, 687, 706, 855, 972
Mly113I	GGCGCC	1 cut(s)	247
MlyI	GAGTC	1 cut(s)	708
MmeI	TCCRAC	2 cut(s)	25, 359
MnlI	CCTC	9 cut(s)	34, 41, 95, 140, 260, 395, 445, 898, 962
MseI	TTAA	4 cut(s)	485, 705, 975, 1027
MslI	CAYNNNNRTG	3 cut(s)	503, 605, 963
MspR9I	CCNGG	2 cut(s)	386, 443
MvaI	CCWGG	2 cut(s)	386, 443
MvnI	CGCG	1 cut(s)	71
NarI	GGCGCC	1 cut(s)	247
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	2 cut(s)	457, 735
NlaIII	CATG	7 cut(s)	79, 113, 259, 502, 508, 604, 726
NlaIV	GGNNCC	4 cut(s)	248, 531, 744, 818
NmuCI	GTSAC	3 cut(s)	565, 607, 877
NspI	RCATGY	1 cut(s)	502
PagI	TCATGA	1 cut(s)	255
PaqCI	CACCTGC	1 cut(s)	23
PfeI	GAWTC	2 cut(s)	226, 632
PflFI	GACNNNGTC	1 cut(s)	655
PfoI	TCCNGGA	1 cut(s)	441
PkrI	GCNGC	8 cut(s)	31, 73, 346, 349, 511, 784, 910, 970
PleI	GAGTC	1 cut(s)	708
PluTI	GGCGCC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	708
Psp6I	CCWGG	2 cut(s)	384, 441
PspGI	CCWGG	2 cut(s)	384, 441
PspN4I	GGNNCC	4 cut(s)	248, 531, 744, 818
PspPI	GGNCC	2 cut(s)	743, 885
PstI	CTGCAG	1 cut(s)	784
PstNI	CAGNNNCTG	2 cut(s)	416, 569
PsuI	RGATCY	1 cut(s)	735
PsyI	GACNNNGTC	1 cut(s)	655
RsaI	GTAC	1 cut(s)	999
RsaNI	GTAC	1 cut(s)	998
RseI	CAYNNNNRTG	3 cut(s)	503, 605, 963
SaqAI	TTAA	4 cut(s)	485, 705, 975, 1027
SatI	GCNGC	8 cut(s)	30, 72, 345, 348, 510, 783, 909, 969
Sau3AI	GATC	2 cut(s)	457, 735
Sau96I	GGNCC	2 cut(s)	743, 885
SchI	GAGTC	1 cut(s)	708
ScrFI	CCNGG	2 cut(s)	386, 443
SduI	GDGCHC	1 cut(s)	821
SfaNI	GCATC	3 cut(s)	150, 704, 955
SfcI	CTRYAG	2 cut(s)	166, 780
SfoI	GGCGCC	1 cut(s)	248
SmiMI	CAYNNNNRTG	3 cut(s)	503, 605, 963
Sse9I	AATT	7 cut(s)	114, 285, 446, 687, 706, 855, 972
SsiI	CCGC	3 cut(s)	71, 347, 926
SspDI	GGCGCC	1 cut(s)	246
SspMI	CTAG	2 cut(s)	518, 812
StyD4I	CCNGG	2 cut(s)	384, 441
StyI	CCWWGG	3 cut(s)	75, 271, 811
TaaI	ACNGT	1 cut(s)	657
TaiI	ACGT	2 cut(s)	650, 1005
TaqI	TCGA	1 cut(s)	229
TasI	AATT	7 cut(s)	114, 285, 446, 687, 706, 855, 972
TatI	WGTACW	1 cut(s)	997
TauI	GCSGC	2 cut(s)	74, 350
TfiI	GAWTC	2 cut(s)	226, 632
Tru1I	TTAA	4 cut(s)	485, 705, 975, 1027
Tru9I	TTAA	4 cut(s)	485, 705, 975, 1027
TscAI	CASTG	2 cut(s)	87, 574
TseFI	GTSAC	3 cut(s)	565, 607, 877
TseI	GCWGC	6 cut(s)	29, 344, 509, 782, 908, 968
Tsp45I	GTSAC	3 cut(s)	565, 607, 877
TspDTI	ATGAA	5 cut(s)	244, 254, 567, 589, 645
TspGWI	ACGGA	3 cut(s)	114, 203, 238
TspRI	CASTG	2 cut(s)	87, 574
Tth111I	GACNNNGTC	1 cut(s)	655
XapI	RAATTY	2 cut(s)	285, 446
XceI	RCATGY	1 cut(s)	502
XmaJI	CCTAGG	1 cut(s)	811
XmiI	GTMKAC	1 cut(s)	165
XspI	CTAG	2 cut(s)	518, 812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.