Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004660

Physical Location & Seq

Genomic Coordinates Reverse (-)

63067015 .. 63072605

Gene Structure 5591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG444200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGATCATGAACGAAAAACCACTGCATTCTGAATTTTTCTTATTTACTGTTTGTAGACGGATTCGACAACCAATGAATAGGCGCCTCTTCATGACCTTCTTCTTCCTTGGTCTAACTGGAATTTTTGGCAACCAGCTTTTGTTTCTTCTTGGTCTTGGCTACACAAATCCAACTTACGCTGCGGCCATACAACCTGCTATCCCTGTTTTTACTTTTATCCTGGCAGTACTCATGGGCACAGAAAGAGTGAATTTGCTCAGAGCTGAAGGGCAGGCCAAAGTTTCTGGTACACTTGTATGTGTTTCTGGTGCCATATTAATGGTCTTATTCCGAGGGCCTGCTTTGATTGGAAGTACAGAACCAGACTTCACATCACACAGTGAGATAAGTGCCAGAGGTCAACCAGAGCCTGTTGGGTGGTTGATGTCCTCTTTCCTGGAATTTGGACTAGATCATTTCCATATCGGAGTTTTATGCTTAATAGGGAACTGCATGTGCATGGCGGCTTTCCTAGCCATTCAGGCTCCACTTTTGAAAAGATATCCTTCCAATCTGTCAGTCACAGCATATTCATACTTATTTGGTGCTTTATTCATGGTGGTGACTGCATTATTTATGACCAATGAATCAACAGACTGGACGTTGACACAGTCCGAGCTTTTTGCAGTTATTTACGCTGGAATTATTGCATCTGCCCTTAATTATGGACTTCTGACATGGTGCAATAAGATCTTGGGGCCTGCTTTGGTTGCTCTTTACAATCCACTTCAACCTGCAGCTTCAGCCTTTTTGTCAAGAGTTTTCCTAGGGAGCCCTATCTATTTGGGAAGTGTTGCAGGGGGTTTACTAATTATTGCTGGTCTTTATGTGGTCACTTGGGCCTCCTTTAGAGAAAGACAAGCAGCTTTGGGTGTTATACCGCCGATTGCTCGGGTCTCCGAACCTCTCGTCTCCGAACCTCTCATCCACAAAGATGCAACAATTAACAAGACACCATTCCACAGAGTACACGTTTTACCAAAATCATCGTCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

345

Amino Acids

37.71

Weight (kDa)

8.74

Isoelectric Point (pI)

40.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	13 - 108	3.5e-09	EamA-like transporter family
EamA	PF00892	155 - 292	4.3e-15	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT4G19185 AT4G19185
fragaria_vesca	FvH4_2g37290 FvH4_2g37290
malus_domestica	MD08G1001200.v1.1
prunus_persica	Prupe.1G353200_v2.0.a1 Prupe.1G353200_v2.0.a1 Prupe.1G353200_v2.0.a1 Prupe.1G353200_v2.0.a1
pyrus_communis	pycom08g00050 pycom15g00010
rosa_chinensis	RchiOBHm_Chr6g0304411
rosa_laevigata	RLG00000010981
rosa_multiflora	Rmu_co8418059.1_g000001 Rmu_ssc0000218.1_g000048
rosa_roxburghii	Rroxscaffold_7G00163760
rosa_rugosa	Rorug06G0331300
rosa_samantha	Rh6AG444200 Rh6BG458200 Rh6CG457000 Rh6DG443700
rosa_wichuraiana	Rw6G038560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	202, 781
AccB1I	GGYRCC	2 cut(s)	81, 308
AccI	GTMKAC	1 cut(s)	55
AciI	CCGC	3 cut(s)	182, 503, 920
AcoI	YGGCCR	1 cut(s)	183
AcsI	RAATTY	4 cut(s)	32, 120, 250, 440
AcuI	CTGAAG	2 cut(s)	285, 765
AcyI	GRCGYC	1 cut(s)	82
AdeI	CACNNNGTG	1 cut(s)	380
AfaI	GTAC	4 cut(s)	228, 289, 355, 1008
AflIII	ACRYGT	1 cut(s)	1009
AgsI	TTSAA	2 cut(s)	535, 770
AjnI	CCWGG	2 cut(s)	219, 435
AloI	GAACNNNNNNTCC	2 cut(s)	948, 980
AluBI	AGCT	5 cut(s)	136, 263, 658, 779, 905
AluI	AGCT	5 cut(s)	136, 263, 658, 779, 905
Alw26I	GTCTC	2 cut(s)	940, 955
AlwNI	CAGNNNCTG	1 cut(s)	410
Ama87I	CYCGRG	1 cut(s)	930
AoxI	GGCC	5 cut(s)	183, 273, 335, 737, 879
ApeKI	GCWGC	3 cut(s)	179, 776, 902
ApoI	RAATTY	4 cut(s)	32, 120, 250, 440
ArsI	GACNNNNNNTTYG	3 cut(s)	933, 965, 1013
AseI	ATTAAT	1 cut(s)	317
AspA2I	CCTAGG	1 cut(s)	805
AspLEI	GCGC	1 cut(s)	84
AspS9I	GGNCC	3 cut(s)	335, 737, 879
AsuHPI	GGTGA	1 cut(s)	613
AvaI	CYCGRG	1 cut(s)	930
AvrII	CCTAGG	1 cut(s)	805
BaeGI	GKGCMC	1 cut(s)	239
BaeI	ACNNNNGTAYC	2 cut(s)	279, 312
BanI	GGYRCC	2 cut(s)	81, 308
BanII	GRGCYC	1 cut(s)	815
BbvI	GCAGC	3 cut(s)	166, 788, 914
BcgI	CGANNNNNNTGC	2 cut(s)	644, 678
BciT130I	CCWGG	2 cut(s)	221, 437
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	2 cut(s)	940, 955
BfaI	CTAG	3 cut(s)	449, 512, 806
BfmI	CTRYAG	1 cut(s)	774
BfoI	RGCGCY	1 cut(s)	85
BfuAI	ACCTGC	2 cut(s)	202, 781
BglI	GCCNNNNNGGC	1 cut(s)	521
BglII	AGATCT	1 cut(s)	729
BisI	GCNGC	5 cut(s)	180, 183, 504, 777, 903
BlnI	CCTAGG	1 cut(s)	805
BlsI	GCNGC	5 cut(s)	181, 184, 505, 778, 904
BmcAI	AGTACT	1 cut(s)	228
Bme1390I	CCNGG	2 cut(s)	221, 437
BmeT110I	CYCGRG	1 cut(s)	930
BmgT120I	GGNCC	3 cut(s)	335, 737, 879
BmiI	GGNNCC	5 cut(s)	83, 310, 525, 738, 812
BmrFI	CCNGG	2 cut(s)	221, 437
BmsI	GCATC	2 cut(s)	698, 964
BsaHI	GRCGYC	1 cut(s)	82
BsaI	GGTCTC	1 cut(s)	940
BsaJI	CCNNGG	3 cut(s)	106, 331, 805
Bse1I	ACTGG	2 cut(s)	121, 641
BseBI	CCWGG	2 cut(s)	221, 437
BseDI	CCNNGG	3 cut(s)	106, 331, 805
BseGI	GGATG	1 cut(s)	963
BseMII	CTCAG	1 cut(s)	271
BseNI	ACTGG	2 cut(s)	121, 641
BseSI	GKGCMC	1 cut(s)	239
BseXI	GCAGC	3 cut(s)	166, 788, 914
BshFI	GGCC	5 cut(s)	185, 275, 337, 739, 881
BshNI	GGYRCC	2 cut(s)	81, 308
BsiHKCI	CYCGRG	1 cut(s)	930
BsmAI	GTCTC	2 cut(s)	940, 955
BsmBI	CGTCTC	1 cut(s)	955
BsmI	GAATGC	1 cut(s)	25
BsnI	GGCC	5 cut(s)	185, 275, 337, 739, 881
Bso31I	GGTCTC	1 cut(s)	940
BsoBI	CYCGRG	1 cut(s)	930
Bsp1286I	GDGCHC	2 cut(s)	239, 815
Bsp143I	GATC	3 cut(s)	3, 451, 729
BspACI	CCGC	3 cut(s)	182, 503, 920
BspANI	GGCC	5 cut(s)	185, 275, 337, 739, 881
BspCNI	CTCAG	1 cut(s)	270
BspHI	TCATGA	2 cut(s)	6, 90
BspLI	GGNNCC	5 cut(s)	83, 310, 525, 738, 812
BspMAI	CTGCAG	1 cut(s)	778
BspMI	ACCTGC	2 cut(s)	202, 781
BspT107I	GGYRCC	2 cut(s)	81, 308
BspTNI	GGTCTC	1 cut(s)	940
BsrI	ACTGG	2 cut(s)	121, 641
BssECI	CCNNGG	3 cut(s)	106, 331, 805
BssMI	GATC	3 cut(s)	3, 451, 729
BssNI	GRCGYC	1 cut(s)	82
BssT1I	CCWWGG	2 cut(s)	106, 805
Bst2UI	CCWGG	2 cut(s)	221, 437
Bst4CI	ACNGT	3 cut(s)	49, 380, 651
Bst6I	CTCTTC	1 cut(s)	92
BstACI	GRCGYC	1 cut(s)	82
BstC8I	GCNNGC	3 cut(s)	273, 339, 741
BstDEI	CTNAG	1 cut(s)	257
BstF5I	GGATG	1 cut(s)	963
BstH2I	RGCGCY	1 cut(s)	85
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	3 cut(s)	6, 454, 732
BstMAI	GTCTC	2 cut(s)	940, 955
BstMBI	GATC	3 cut(s)	3, 451, 729
BstMWI	GCNNNNNNNGC	4 cut(s)	512, 521, 749, 782
BstNI	CCWGG	2 cut(s)	221, 437
BstNSI	RCATGY	1 cut(s)	496
BstSCI	CCNGG	2 cut(s)	219, 435
BstSFI	CTRYAG	1 cut(s)	774
BstSLI	GKGCMC	1 cut(s)	239
BstV1I	GCAGC	3 cut(s)	166, 788, 914
BstX2I	RGATCY	1 cut(s)	729
BstXI	CCANNNNNNTGG	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	729
BsuRI	GGCC	5 cut(s)	185, 275, 337, 739, 881
BtsCI	GGATG	1 cut(s)	963
BtsI	GCAGTG	1 cut(s)	20
BtsIMutI	CAGTG	2 cut(s)	20, 385
BveI	ACCTGC	2 cut(s)	202, 781
Cac8I	GCNNGC	3 cut(s)	273, 339, 741
CaiI	CAGNNNCTG	1 cut(s)	410
CciI	TCATGA	2 cut(s)	6, 90
CfoI	GCGC	1 cut(s)	84
Cfr13I	GGNCC	3 cut(s)	335, 737, 879
Csp6I	GTAC	4 cut(s)	227, 288, 354, 1007
CviAII	CATG	7 cut(s)	7, 91, 232, 493, 499, 595, 717
CviQI	GTAC	4 cut(s)	227, 288, 354, 1007
DdeI	CTNAG	1 cut(s)	257
DinI	GGCGCC	1 cut(s)	83
DpnI	GATC	3 cut(s)	5, 453, 731
DpnII	GATC	3 cut(s)	3, 451, 729
DraIII	CACNNNGTG	1 cut(s)	380
EaeI	YGGCCR	1 cut(s)	183
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
Eco130I	CCWWGG	2 cut(s)	106, 805
Eco24I	GRGCYC	1 cut(s)	815
Eco31I	GGTCTC	1 cut(s)	940
Eco32I	GATATC	1 cut(s)	542
Eco57I	CTGAAG	2 cut(s)	285, 765
Eco88I	CYCGRG	1 cut(s)	930
EcoO109I	RGGNCCY	2 cut(s)	335, 737
EcoRII	CCWGG	2 cut(s)	219, 435
EcoRV	GATATC	1 cut(s)	542
EcoT14I	CCWWGG	2 cut(s)	106, 805
EcoT38I	GRGCYC	1 cut(s)	815
EgeI	GGCGCC	1 cut(s)	83
EheI	GGCGCC	1 cut(s)	83
ErhI	CCWWGG	2 cut(s)	106, 805
Esp3I	CGTCTC	1 cut(s)	955
FaeI	CATG	7 cut(s)	10, 94, 235, 496, 502, 598, 720
FalI	AAGNNNNNCTT	2 cut(s)	529, 561
FatI	CATG	7 cut(s)	6, 90, 231, 492, 498, 594, 716
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	55
Fnu4HI	GCNGC	5 cut(s)	180, 183, 504, 777, 903
FokI	GGATG	1 cut(s)	950
FriOI	GRGCYC	1 cut(s)	815
Fsp4HI	GCNGC	5 cut(s)	180, 183, 504, 777, 903
FspBI	CTAG	3 cut(s)	449, 512, 806
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	5 cut(s)	180, 183, 504, 777, 903
HaeII	RGCGCY	1 cut(s)	85
HaeIII	GGCC	5 cut(s)	185, 275, 337, 739, 881
HhaI	GCGC	1 cut(s)	84
Hin1I	GRCGYC	1 cut(s)	82
Hin1II	CATG	7 cut(s)	10, 94, 235, 496, 502, 598, 720
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HincII	GTYRAC	2 cut(s)	401, 645
HindII	GTYRAC	2 cut(s)	401, 645
HinfI	GANTC	2 cut(s)	61, 626
HphI	GGTGA	1 cut(s)	613
Hpy166II	GTNNAC	6 cut(s)	56, 290, 401, 645, 845, 1009
Hpy188I	TCNGA	9 cut(s)	31, 260, 332, 467, 655, 714, 940, 955, 1033
Hpy188III	TCNNGA	3 cut(s)	7, 91, 795
Hpy8I	GTNNAC	6 cut(s)	56, 290, 401, 645, 845, 1009
HpyAV	CCTTC	3 cut(s)	106, 260, 555
HpyCH4III	ACNGT	3 cut(s)	49, 380, 651
HpyCH4IV	ACGT	2 cut(s)	641, 1011
HpyF10VI	GCNNNNNNNGC	4 cut(s)	512, 521, 749, 782
HpyF3I	CTNAG	1 cut(s)	257
HpySE526I	ACGT	2 cut(s)	641, 1011
Hsp92I	GRCGYC	1 cut(s)	82
Hsp92II	CATG	7 cut(s)	10, 94, 235, 496, 502, 598, 720
HspAI	GCGC	1 cut(s)	82
KasI	GGCGCC	1 cut(s)	81
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 451, 729
LmnI	GCTCC	2 cut(s)	529, 810
Lsp1109I	GCAGC	3 cut(s)	166, 788, 914
LweI	GCATC	2 cut(s)	698, 964
MaeI	CTAG	3 cut(s)	449, 512, 806
MaeII	ACGT	2 cut(s)	641, 1011
MaeIII	GTNAC	3 cut(s)	559, 601, 871
MalI	GATC	3 cut(s)	5, 453, 731
MboI	GATC	3 cut(s)	3, 451, 729
MboII	GAAGA	4 cut(s)	79, 91, 94, 137
MflI	RGATCY	1 cut(s)	729
MhlI	GDGCHC	2 cut(s)	239, 815
MluCI	AATT	8 cut(s)	32, 120, 250, 440, 681, 700, 849, 981
Mly113I	GGCGCC	1 cut(s)	82
MmeI	TCCRAC	1 cut(s)	194
MnlI	CCTC	7 cut(s)	95, 326, 389, 439, 892, 954, 969
MseI	TTAA	5 cut(s)	317, 479, 699, 984, 1036
MslI	CAYNNNNRTG	5 cut(s)	295, 317, 497, 599, 972
MspR9I	CCNGG	2 cut(s)	221, 437
Mva1269I	GAATGC	1 cut(s)	25
MvaI	CCWGG	2 cut(s)	221, 437
MwoI	GCNNNNNNNGC	4 cut(s)	512, 521, 749, 782
NarI	GGCGCC	1 cut(s)	82
NdeII	GATC	3 cut(s)	3, 451, 729
NlaIII	CATG	7 cut(s)	10, 94, 235, 496, 502, 598, 720
NlaIV	GGNNCC	5 cut(s)	83, 310, 525, 738, 812
NmuCI	GTSAC	3 cut(s)	559, 601, 871
NspI	RCATGY	1 cut(s)	496
PagI	TCATGA	2 cut(s)	6, 90
PctI	GAATGC	1 cut(s)	25
PfeI	GAWTC	2 cut(s)	61, 626
PflFI	GACNNNGTC	1 cut(s)	649
PfoI	TCCNGGA	1 cut(s)	435
PkrI	GCNGC	5 cut(s)	181, 184, 505, 778, 904
PluTI	GGCGCC	1 cut(s)	85
PshBI	ATTAAT	1 cut(s)	317
Psp6I	CCWGG	2 cut(s)	219, 435
PspGI	CCWGG	2 cut(s)	219, 435
PspN4I	GGNNCC	5 cut(s)	83, 310, 525, 738, 812
PspPI	GGNCC	3 cut(s)	335, 737, 879
PstI	CTGCAG	1 cut(s)	778
PstNI	CAGNNNCTG	1 cut(s)	410
PsuI	RGATCY	1 cut(s)	729
PsyI	GACNNNGTC	1 cut(s)	649
RsaI	GTAC	4 cut(s)	228, 289, 355, 1008
RsaNI	GTAC	4 cut(s)	227, 288, 354, 1007
RseI	CAYNNNNRTG	5 cut(s)	295, 317, 497, 599, 972
SaqAI	TTAA	5 cut(s)	317, 479, 699, 984, 1036
SatI	GCNGC	5 cut(s)	180, 183, 504, 777, 903
Sau3AI	GATC	3 cut(s)	3, 451, 729
Sau96I	GGNCC	3 cut(s)	335, 737, 879
ScaI	AGTACT	1 cut(s)	228
ScrFI	CCNGG	2 cut(s)	221, 437
SduI	GDGCHC	2 cut(s)	239, 815
SfaNI	GCATC	2 cut(s)	698, 964
SfcI	CTRYAG	1 cut(s)	774
SfoI	GGCGCC	1 cut(s)	83
SmiMI	CAYNNNNRTG	5 cut(s)	295, 317, 497, 599, 972
Sse9I	AATT	8 cut(s)	32, 120, 250, 440, 681, 700, 849, 981
SsiI	CCGC	3 cut(s)	182, 503, 920
SspDI	GGCGCC	1 cut(s)	81
SspMI	CTAG	3 cut(s)	449, 512, 806
StyD4I	CCNGG	2 cut(s)	219, 435
StyI	CCWWGG	2 cut(s)	106, 805
TaaI	ACNGT	3 cut(s)	49, 380, 651
TaiI	ACGT	2 cut(s)	644, 1014
TaqI	TCGA	1 cut(s)	64
TasI	AATT	8 cut(s)	32, 120, 250, 440, 681, 700, 849, 981
TatI	WGTACW	3 cut(s)	226, 353, 1006
TauI	GCSGC	2 cut(s)	185, 506
TfiI	GAWTC	2 cut(s)	61, 626
Tru1I	TTAA	5 cut(s)	317, 479, 699, 984, 1036
Tru9I	TTAA	5 cut(s)	317, 479, 699, 984, 1036
TscAI	CASTG	2 cut(s)	27, 385
TseFI	GTSAC	3 cut(s)	559, 601, 871
TseI	GCWGC	3 cut(s)	179, 776, 902
Tsp45I	GTSAC	3 cut(s)	559, 601, 871
TspDTI	ATGAA	6 cut(s)	23, 79, 89, 561, 583, 639
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	2 cut(s)	27, 385
Tth111I	GACNNNGTC	1 cut(s)	649
VspI	ATTAAT	1 cut(s)	317
XapI	RAATTY	4 cut(s)	32, 120, 250, 440
XceI	RCATGY	1 cut(s)	496
XmaJI	CCTAGG	1 cut(s)	805
XmiI	GTMKAC	1 cut(s)	55
XspI	CTAG	3 cut(s)	449, 512, 806
ZrmI	AGTACT	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.