Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004660

Physical Location & Seq

Genomic Coordinates Reverse (-)

10489038 .. 10491752

Gene Structure 2715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G19185.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGACGGCGCCGATGATCCTGACCGGAAGTGGATCGGCGGCGGAGAGAGACGCTCGGATGGCGCACACTGCTATGGCGTTTGTTCAGCTCTTTAATGGTGGATACCATGTGATTACTAAAGTAGCTCTTAATGTTGGAGTCAACCAGCTTGTCTTCTGTGTATGCCGTGATCTTCTTGCTCTCTCTATTCTCGCTCCTCTTGCTTACTTCCGCGAAAGAAAGATCAGAACTCCAATGAATAAAAGCCTTCTCTTGTCATTCTTCTTTCTGGGCTTAGCAGGGGTATTTGGGAACCAGTTGTTATTTCTTATCGGTCTTACATACACAAATCCCACTTATGCTGCTGCCATTCAACCATCCATCCCGGTCTTCACCTTTCTCTTGGCTGTCATGATGGGTACAGAAAGAGTGAATTTGTTGAGAATCGAAGGTCAAACTAAGGTTGGAGGCACACTTGTGTGTGTTATGGGTGCTGTCTTCATGGTTGTATTTCGAGGTCCGGCCTTGTTAGGAGATAAAGATGCAGACTTTGCGATGAACAATGAAATCAGTGCTAAAGGTCAACCTGAGCCTACTGGTTGGTTAGTCTCTGGTTTTCTCGATCTTGGATTTGAGCAATGGCACATTGGAGTTTTATGCTTGATTGGAAACTGCATGTGTATGGCTACTTTTCTTGCCATTCAGGCGCCACTTTTGAAGAAGTATCCGGCAAATCTTTCTGTTGCTGCATTATCATACTTCTTTGGCACAGTACTAATGTGCACAACAGCTTTCTTTATGGTAAAGGAGCCATTGGATTGGAAGCTAACACAATCTGAGGTTCTTGCAGTTATATATGCAGGAGTTATCGCATCAGCACTAAACTATGGACTCTTGACTTGGTCCAATAAGATTATTGGTCCTGCCTTGGTTGCTCTCTACAATCCTCTTCAACCCGCTGCATCAGCTTTCCTATCGAGAATCTTTCTCGGTAGCCCCATTTATCTCGGAAGCGTTGTGGGTGGATTCTTCATCATTCTAGGACTCTATATGGTCACTTGGGCATCGTTTAGAGAGCGAAAAACAGCGGTTTCCGGGATTGGGATTGCGCCCCATGGTCTAAAAACCTCAGAGCCTCTGATATTTAATGGGACAGTTAACAGACTAGGACAGTTGTTTTCTGGATTACCCAGTTCCTCTGTGAAATCTGCAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

398

Amino Acids

42.88

Weight (kDa)

9.13

Isoelectric Point (pI)

29.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	26 - 160	1.9e-13	EamA-like transporter family
EamA	PF00892	209 - 346	3.8e-15	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT4G19185 AT4G19185
fragaria_vesca	FvH4_2g37290 FvH4_2g37290
malus_domestica	MD08G1001200.v1.1
prunus_persica	Prupe.1G353200_v2.0.a1 Prupe.1G353200_v2.0.a1 Prupe.1G353200_v2.0.a1 Prupe.1G353200_v2.0.a1
pyrus_communis	pycom08g00050 pycom15g00010
rosa_chinensis	RchiOBHm_Chr6g0304411
rosa_laevigata	RLG00000010981
rosa_multiflora	Rmu_co8418059.1_g000001 Rmu_ssc0000218.1_g000048
rosa_roxburghii	Rroxscaffold_7G00163760
rosa_rugosa	Rorug06G0331300
rosa_samantha	Rh6AG444200 Rh6BG458200 Rh6CG457000 Rh6DG443700
rosa_wichuraiana	Rw6G038560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	7, 685
AccII	CGCG	1 cut(s)	213
AciI	CCGC	5 cut(s)	38, 41, 211, 936, 1067
AclWI	GGATC	2 cut(s)	10, 40
AcsI	RAATTY	1 cut(s)	412
AcyI	GRCGYC	2 cut(s)	8, 686
AfaI	GTAC	2 cut(s)	400, 753
AfiI	CCNNNNNNNGG	1 cut(s)	1080
AgsI	TTSAA	3 cut(s)	353, 697, 932
AleI	CACNNNNGTG	2 cut(s)	455, 457
AluBI	AGCT	6 cut(s)	88, 125, 148, 770, 805, 947
AluI	AGCT	6 cut(s)	88, 125, 148, 770, 805, 947
Alw21I	GWGCWC	1 cut(s)	764
Alw26I	GTCTC	2 cut(s)	42, 592
Alw44I	GTGCAC	1 cut(s)	760
AlwI	GGATC	2 cut(s)	10, 40
AoxI	GGCC	1 cut(s)	501
ApaLI	GTGCAC	1 cut(s)	760
ApeKI	GCWGC	4 cut(s)	341, 344, 725, 938
ApoI	RAATTY	1 cut(s)	412
AspLEI	GCGC	4 cut(s)	10, 64, 688, 1090
AspS9I	GGNCC	3 cut(s)	497, 882, 899
AsuC2I	CCSGG	2 cut(s)	365, 1075
AsuHPI	GGTGA	1 cut(s)	364
AvaII	GGWCC	3 cut(s)	497, 882, 899
BaeGI	GKGCMC	1 cut(s)	764
BanI	GGYRCC	2 cut(s)	7, 685
BbsI	GAAGAC	3 cut(s)	145, 361, 469
Bbv12I	GWGCWC	1 cut(s)	764
BbvI	GCAGC	4 cut(s)	328, 331, 712, 925
BccI	CCATC	4 cut(s)	52, 364, 368, 388
BceAI	ACGGC	2 cut(s)	21, 150
BciVI	GTATCC	2 cut(s)	95, 714
BcnI	CCSGG	2 cut(s)	365, 1075
BcoDI	GTCTC	2 cut(s)	42, 592
BfaI	CTAG	2 cut(s)	1019, 1145
BfmI	CTRYAG	1 cut(s)	1188
BfoI	RGCGCY	2 cut(s)	11, 689
BfuI	GTATCC	2 cut(s)	95, 714
BglI	GCCNNNNNGGC	1 cut(s)	683
BisI	GCNGC	5 cut(s)	39, 342, 345, 726, 939
BlpI	GCTNAGC	1 cut(s)	274
BlsI	GCNGC	5 cut(s)	40, 343, 346, 727, 940
BmcAI	AGTACT	1 cut(s)	753
Bme1390I	CCNGG	2 cut(s)	365, 1075
Bme18I	GGWCC	3 cut(s)	497, 882, 899
BmgT120I	GGNCC	3 cut(s)	497, 882, 899
BmiI	GGNNCC	4 cut(s)	9, 293, 687, 789
BmrFI	CCNGG	2 cut(s)	365, 1075
BmrI	ACTGGG	1 cut(s)	1164
BmsI	GCATC	4 cut(s)	511, 860, 950, 1052
BmuI	ACTGGG	1 cut(s)	1164
BpiI	GAAGAC	3 cut(s)	145, 361, 469
BplI	GAGNNNNNCTC	2 cut(s)	37, 69
Bpu10I	CCTNAGC	1 cut(s)	567
Bpu1102I	GCTNAGC	1 cut(s)	274
BpuMI	CCSGG	2 cut(s)	365, 1075
BsaHI	GRCGYC	2 cut(s)	8, 686
BsaJI	CCNNGG	2 cut(s)	906, 1093
BsaWI	WCCGGW	1 cut(s)	23
Bsc4I	CCNNNNNNNGG	1 cut(s)	1080
Bse1I	ACTGG	3 cut(s)	295, 580, 1170
Bse3DI	GCAATG	1 cut(s)	623
BseDI	CCNNGG	2 cut(s)	906, 1093
BseGI	GGATG	3 cut(s)	63, 356, 360
BseLI	CCNNNNNNNGG	1 cut(s)	1080
BseMI	GCAATG	1 cut(s)	623
BseMII	CTCAG	3 cut(s)	558, 807, 1122
BseNI	ACTGG	3 cut(s)	295, 580, 1170
BseRI	GAGGAG	1 cut(s)	186
BseSI	GKGCMC	1 cut(s)	764
BseXI	GCAGC	4 cut(s)	328, 331, 712, 925
Bsh1236I	CGCG	1 cut(s)	213
BshFI	GGCC	1 cut(s)	503
BshNI	GGYRCC	2 cut(s)	7, 685
BsiHKAI	GWGCWC	1 cut(s)	764
BsiSI	CCGG	5 cut(s)	24, 365, 500, 707, 1074
BslFI	GGGAC	1 cut(s)	1144
BslI	CCNNNNNNNGG	1 cut(s)	1080
BsmAI	GTCTC	2 cut(s)	42, 592
BsmBI	CGTCTC	1 cut(s)	42
BsmFI	GGGAC	1 cut(s)	1144
BsnI	GGCC	1 cut(s)	503
Bsp1286I	GDGCHC	1 cut(s)	764
Bsp143I	GATC	5 cut(s)	15, 32, 169, 222, 601
Bsp1720I	GCTNAGC	1 cut(s)	274
Bsp19I	CCATGG	1 cut(s)	1093
BspACI	CCGC	5 cut(s)	38, 41, 211, 936, 1067
BspANI	GGCC	1 cut(s)	503
BspCNI	CTCAG	3 cut(s)	559, 808, 1121
BspFNI	CGCG	1 cut(s)	213
BspHI	TCATGA	1 cut(s)	390
BspLI	GGNNCC	4 cut(s)	9, 293, 687, 789
BspMAI	CTGCAG	1 cut(s)	1192
BspPI	GGATC	2 cut(s)	10, 40
BspT107I	GGYRCC	2 cut(s)	7, 685
BsrDI	GCAATG	1 cut(s)	623
BsrI	ACTGG	3 cut(s)	295, 580, 1170
BssECI	CCNNGG	2 cut(s)	906, 1093
BssMI	GATC	5 cut(s)	15, 32, 169, 222, 601
BssNI	GRCGYC	2 cut(s)	8, 686
BssT1I	CCWWGG	2 cut(s)	906, 1093
Bst4CI	ACNGT	3 cut(s)	751, 1135, 1152
Bst6I	CTCTTC	1 cut(s)	933
BstACI	GRCGYC	2 cut(s)	8, 686
BstAPI	GCANNNNNTGC	1 cut(s)	530
BstDEI	CTNAG	5 cut(s)	274, 438, 567, 816, 1108
BstDSI	CCRYGG	1 cut(s)	1093
BstF5I	GGATG	3 cut(s)	63, 356, 360
BstFNI	CGCG	1 cut(s)	213
BstH2I	RGCGCY	2 cut(s)	11, 689
BstHHI	GCGC	4 cut(s)	10, 64, 688, 1090
BstKTI	GATC	5 cut(s)	18, 35, 172, 225, 604
BstMAI	GTCTC	2 cut(s)	42, 592
BstMBI	GATC	5 cut(s)	15, 32, 169, 222, 601
BstMWI	GCNNNNNNNGC	7 cut(s)	59, 68, 200, 530, 683, 911, 944
BstNSI	RCATGY	1 cut(s)	658
BstSCI	CCNGG	2 cut(s)	363, 1073
BstSFI	CTRYAG	1 cut(s)	1188
BstSLI	GKGCMC	1 cut(s)	764
BstUI	CGCG	1 cut(s)	213
BstV1I	GCAGC	4 cut(s)	328, 331, 712, 925
BstV2I	GAAGAC	3 cut(s)	145, 361, 469
BstXI	CCANNNNNNTGG	1 cut(s)	798
BsuI	GTATCC	2 cut(s)	95, 714
BsuRI	GGCC	1 cut(s)	503
BtgI	CCRYGG	1 cut(s)	1093
BtgZI	GCGATG	1 cut(s)	548
BtsCI	GGATG	3 cut(s)	63, 356, 360
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	2 cut(s)	66, 556
CciI	TCATGA	1 cut(s)	390
CfoI	GCGC	4 cut(s)	10, 64, 688, 1090
Cfr13I	GGNCC	3 cut(s)	497, 882, 899
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	2 cut(s)	399, 752
CviAII	CATG	5 cut(s)	107, 391, 481, 655, 1094
CviQI	GTAC	2 cut(s)	399, 752
DdeI	CTNAG	5 cut(s)	274, 438, 567, 816, 1108
DinI	GGCGCC	2 cut(s)	9, 687
DpnI	GATC	5 cut(s)	17, 34, 171, 224, 603
DpnII	GATC	5 cut(s)	15, 32, 169, 222, 601
Eam1104I	CTCTTC	1 cut(s)	933
EarI	CTCTTC	1 cut(s)	933
EciI	GGCGGA	1 cut(s)	56
Eco130I	CCWWGG	2 cut(s)	906, 1093
Eco47I	GGWCC	3 cut(s)	497, 882, 899
EcoT14I	CCWWGG	2 cut(s)	906, 1093
EgeI	GGCGCC	2 cut(s)	9, 687
EheI	GGCGCC	2 cut(s)	9, 687
ErhI	CCWWGG	2 cut(s)	906, 1093
Esp3I	CGTCTC	1 cut(s)	42
FaeI	CATG	5 cut(s)	110, 394, 484, 658, 1097
FalI	AAGNNNNNCTT	2 cut(s)	111, 143
FaqI	GGGAC	1 cut(s)	1144
FatI	CATG	5 cut(s)	106, 390, 480, 654, 1093
FauI	CCCGC	1 cut(s)	943
Fnu4HI	GCNGC	5 cut(s)	39, 342, 345, 726, 939
FokI	GGATG	3 cut(s)	70, 343, 347
Fsp4HI	GCNGC	5 cut(s)	39, 342, 345, 726, 939
FspBI	CTAG	2 cut(s)	1019, 1145
GlaI	GCGC	4 cut(s)	9, 63, 687, 1089
GluI	GCNGC	5 cut(s)	39, 342, 345, 726, 939
HaeII	RGCGCY	2 cut(s)	11, 689
HaeIII	GGCC	1 cut(s)	503
HapII	CCGG	5 cut(s)	24, 365, 500, 707, 1074
HgaI	GACGC	1 cut(s)	59
HhaI	GCGC	4 cut(s)	10, 64, 688, 1090
Hin1I	GRCGYC	2 cut(s)	8, 686
Hin1II	CATG	5 cut(s)	110, 394, 484, 658, 1097
Hin6I	GCGC	4 cut(s)	8, 62, 686, 1088
HinP1I	GCGC	4 cut(s)	8, 62, 686, 1088
HincII	GTYRAC	3 cut(s)	142, 563, 1138
HindII	GTYRAC	3 cut(s)	142, 563, 1138
HinfI	GANTC	6 cut(s)	138, 423, 870, 960, 1005, 1023
HpaI	GTTAAC	1 cut(s)	1138
HpaII	CCGG	5 cut(s)	24, 365, 500, 707, 1074
HphI	GGTGA	1 cut(s)	364
Hpy166II	GTNNAC	4 cut(s)	142, 563, 762, 1138
Hpy188I	TCNGA	6 cut(s)	57, 227, 817, 989, 1111, 1119
Hpy188III	TCNNGA	6 cut(s)	19, 391, 599, 874, 957, 1161
Hpy8I	GTNNAC	4 cut(s)	142, 563, 762, 1138
HpyAV	CCTTC	2 cut(s)	257, 422
HpyCH4III	ACNGT	3 cut(s)	751, 1135, 1152
HpyCH4V	TGCA	8 cut(s)	524, 654, 728, 762, 827, 839, 941, 1190
HpyF10VI	GCNNNNNNNGC	7 cut(s)	59, 68, 200, 530, 683, 911, 944
HpyF3I	CTNAG	5 cut(s)	274, 438, 567, 816, 1108
Hsp92I	GRCGYC	2 cut(s)	8, 686
Hsp92II	CATG	5 cut(s)	110, 394, 484, 658, 1097
HspAI	GCGC	4 cut(s)	8, 62, 686, 1088
KasI	GGCGCC	2 cut(s)	7, 685
KspAI	GTTAAC	1 cut(s)	1138
Kzo9I	GATC	5 cut(s)	15, 32, 169, 222, 601
LmnI	GCTCC	2 cut(s)	199, 787
Lsp1109I	GCAGC	4 cut(s)	328, 331, 712, 925
LweI	GCATC	4 cut(s)	511, 860, 950, 1052
MaeI	CTAG	2 cut(s)	1019, 1145
MaeIII	GTNAC	1 cut(s)	1033
MalI	GATC	5 cut(s)	17, 34, 171, 224, 603
MboI	GATC	5 cut(s)	15, 32, 169, 222, 601
MboII	GAAGA	8 cut(s)	145, 164, 253, 361, 469, 709, 920, 1000
MhlI	GDGCHC	1 cut(s)	764
MluCI	AATT	1 cut(s)	412
Mly113I	GGCGCC	2 cut(s)	8, 686
MlyI	GAGTC	3 cut(s)	147, 864, 1017
MmeI	TCCRAC	2 cut(s)	115, 424
MnlI	CCTC	8 cut(s)	207, 440, 488, 811, 936, 1117, 1125, 1186
MseI	TTAA	4 cut(s)	93, 129, 1125, 1137
MslI	CAYNNNNRTG	4 cut(s)	71, 455, 457, 659
MspA1I	CMGCKG	2 cut(s)	938, 1067
MspI	CCGG	5 cut(s)	24, 365, 500, 707, 1074
MspR9I	CCNGG	2 cut(s)	365, 1075
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	7 cut(s)	59, 68, 200, 530, 683, 911, 944
NarI	GGCGCC	2 cut(s)	8, 686
NciI	CCSGG	2 cut(s)	365, 1075
NcoI	CCATGG	1 cut(s)	1093
NdeII	GATC	5 cut(s)	15, 32, 169, 222, 601
NlaIII	CATG	5 cut(s)	110, 394, 484, 658, 1097
NlaIV	GGNNCC	4 cut(s)	9, 293, 687, 789
NmuCI	GTSAC	1 cut(s)	1033
NspI	RCATGY	1 cut(s)	658
OliI	CACNNNNGTG	2 cut(s)	455, 457
PagI	TCATGA	1 cut(s)	390
PfeI	GAWTC	3 cut(s)	423, 960, 1005
PflFI	GACNNNGTC	1 cut(s)	880
PfoI	TCCNGGA	1 cut(s)	1073
PkrI	GCNGC	5 cut(s)	40, 343, 346, 727, 940
PleI	GAGTC	3 cut(s)	146, 864, 1017
PluTI	GGCGCC	2 cut(s)	11, 689
PpsI	GAGTC	3 cut(s)	146, 864, 1017
PspN4I	GGNNCC	4 cut(s)	9, 293, 687, 789
PspPI	GGNCC	3 cut(s)	497, 882, 899
PstI	CTGCAG	1 cut(s)	1192
PsyI	GACNNNGTC	1 cut(s)	880
RsaI	GTAC	2 cut(s)	400, 753
RsaNI	GTAC	2 cut(s)	399, 752
RseI	CAYNNNNRTG	4 cut(s)	71, 455, 457, 659
SaqAI	TTAA	4 cut(s)	93, 129, 1125, 1137
SatI	GCNGC	5 cut(s)	39, 342, 345, 726, 939
Sau3AI	GATC	5 cut(s)	15, 32, 169, 222, 601
Sau96I	GGNCC	3 cut(s)	497, 882, 899
ScaI	AGTACT	1 cut(s)	753
SchI	GAGTC	3 cut(s)	147, 864, 1017
ScrFI	CCNGG	2 cut(s)	365, 1075
SduI	GDGCHC	1 cut(s)	764
SfaNI	GCATC	4 cut(s)	511, 860, 950, 1052
SfcI	CTRYAG	1 cut(s)	1188
SfoI	GGCGCC	2 cut(s)	9, 687
SinI	GGWCC	3 cut(s)	497, 882, 899
SmiMI	CAYNNNNRTG	4 cut(s)	71, 455, 457, 659
Sse9I	AATT	1 cut(s)	412
SsiI	CCGC	5 cut(s)	38, 41, 211, 936, 1067
SspDI	GGCGCC	2 cut(s)	7, 685
SspMI	CTAG	2 cut(s)	1019, 1145
StyD4I	CCNGG	2 cut(s)	363, 1073
StyI	CCWWGG	2 cut(s)	906, 1093
TaaI	ACNGT	3 cut(s)	751, 1135, 1152
TaqI	TCGA	4 cut(s)	426, 493, 600, 956
TaqII	GACCGA	1 cut(s)	302
TasI	AATT	1 cut(s)	412
TatI	WGTACW	1 cut(s)	751
TauI	GCSGC	1 cut(s)	41
TfiI	GAWTC	3 cut(s)	423, 960, 1005
Tru1I	TTAA	4 cut(s)	93, 129, 1125, 1137
Tru9I	TTAA	4 cut(s)	93, 129, 1125, 1137
TscAI	CASTG	2 cut(s)	73, 556
TseFI	GTSAC	1 cut(s)	1033
TseI	GCWGC	4 cut(s)	341, 344, 725, 938
Tsp45I	GTSAC	1 cut(s)	1033
TspDTI	ATGAA	5 cut(s)	251, 469, 551, 558, 1000
TspRI	CASTG	2 cut(s)	73, 556
Tth111I	GACNNNGTC	1 cut(s)	880
VneI	GTGCAC	1 cut(s)	760
VpaK11BI	GGWCC	3 cut(s)	497, 882, 899
XapI	RAATTY	1 cut(s)	412
XceI	RCATGY	1 cut(s)	658
XspI	CTAG	2 cut(s)	1019, 1145
ZrmI	AGTACT	1 cut(s)	753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.