Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0004660

Physical Location & Seq

Genomic Coordinates Forward (+)

95630 .. 104179

Gene Structure 8550 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1001200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGCAGCGGCGGCAGGGGTTGGAGTTGGTGGAGGTGATGTTTGGAGGGCACATGCGGCCATGGCAGCGGTTCAGCTCTTCAACGGAGGGTATCATGTAATTACCAAAGTAGCCCTTAACGTTGGCGTCAACCAGCTTGTATTCTGCGTATACCGGGACCTCCTTGCACTCGCCATCCTCGCTCCCATCGCCTATGTCCGTGAAAAAAGGATACGACAACCAATGAATAGACGCCTCTTCGTGTCCTTCTTCTTTCTTGGGTTAACTGGGATCTTTGGCAACCAGCTTTTGTTTCTTATTGGTCTTGGCTACACAAATCCAACATATGCTGCTGCCATACAGCCTGCTATCCCAGTTTTCACGTTTATCCTCGCTGTTTTAATGGGTACAGAAAGAGTTAACTTGCTTAGAACTGAAGGGCAGGCCAAGGTTGGTGGTACACTTTTATGTGTTTCTGGAGCCATATTAATGGTCTTATTTCGTGGACCTCCTTTGATTGGATATACAGAACCAGACTTTGCAGCACATAGCGAAATAAGTGCCAAAGGTCAACCAGAGCCAGCTGGATGGTTGATGTCCAGTTTTCTAGAGTTTGGGCTAGATCACTTTCATCTTGGAGTTTTATGCTTATTAGGGAACTGTATGTGCATGGCCGCTTTTTTAGCCATTCAGGCTCCACTTTTGAAAAGATATACTGCCAACCTGTCAGTTACAGCATATTCATACTTCTTCGGTGCGCTATTGATGGTGGTTACTGCATTATTTATGACAAACGAGTCAACAGACTGGAGCTTGACACACTCTGAGCTTTTTGCAGTTTTTTATGCTGGAACTGTTGCATCTGCCCTTAATTATGGACTGCTGACGTGGAGCAATAAGATTTTGGGGCCTGCTATGGTTGCTCTTTACAATCCACTTCAACCTGCAGCTTCGGCGTTTTTGTCAAGGATTTTCCTTGGAAGCCCTATTTATTTGGGAAGTGTCTTAGGAGGAATATTAATTATTGCTGGTCTGTATGTGGTAACTTGGGCGTCTTTGAGAGAAAGACAAGCAGCTCTGGATGTTGTTATACCTCACGTTGCTCGGGGCTCGGAACCTCTCATCCAGAAAGATGCAACGCTTAACAAGATACCATTCCAGAGAGGACTCATTTTCTCAGTGCCTTCCAGTTCAATACCAAAGTCGTCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

398

Amino Acids

42.69

Weight (kDa)

9.05

Isoelectric Point (pI)

32.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	20 - 158	6.1e-15	EamA-like transporter family
EamA	PF00892	205 - 342	2.8e-14	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT4G19185 AT4G19185
fragaria_vesca	FvH4_2g37290 FvH4_2g37290
malus_domestica	MD08G1001200.v1.1
prunus_persica	Prupe.1G353200_v2.0.a1 Prupe.1G353200_v2.0.a1 Prupe.1G353200_v2.0.a1 Prupe.1G353200_v2.0.a1
pyrus_communis	pycom08g00050 pycom15g00010
rosa_chinensis	RchiOBHm_Chr6g0304411
rosa_laevigata	RLG00000010981
rosa_multiflora	Rmu_co8418059.1_g000001 Rmu_ssc0000218.1_g000048
rosa_roxburghii	Rroxscaffold_7G00163760
rosa_rugosa	Rorug06G0331300
rosa_samantha	Rh6AG444200 Rh6BG458200 Rh6CG457000 Rh6DG443700
rosa_wichuraiana	Rw6G038560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	775
Acc36I	ACCTGC	1 cut(s)	931
AccI	GTMKAC	1 cut(s)	150
AciI	CCGC	5 cut(s)	8, 11, 56, 68, 654
AclI	AACGTT	1 cut(s)	120
AclWI	GGATC	1 cut(s)	278
AcoI	YGGCCR	2 cut(s)	57, 651
AcuI	CTGAAG	1 cut(s)	435
AcyI	GRCGYC	3 cut(s)	126, 232, 1031
AfaI	GTAC	2 cut(s)	388, 439
AfiI	CCNNNNNNNGG	1 cut(s)	497
AgsI	TTSAA	4 cut(s)	82, 685, 920, 1173
AjiI	CACGTC	1 cut(s)	867
AloI	GAACNNNNNNTCC	2 cut(s)	1086, 1118
AluBI	AGCT	8 cut(s)	76, 136, 286, 563, 792, 808, 929, 1055
AluI	AGCT	8 cut(s)	76, 136, 286, 563, 792, 808, 929, 1055
AlwI	GGATC	1 cut(s)	278
Ama87I	CYCGRG	1 cut(s)	1083
AoxI	GGCC	4 cut(s)	57, 423, 651, 887
ApeKI	GCWGC	7 cut(s)	5, 65, 329, 332, 521, 926, 1052
AseI	ATTAAT	2 cut(s)	467, 998
AspLEI	GCGC	1 cut(s)	739
AspS9I	GGNCC	3 cut(s)	157, 485, 887
AsuC2I	CCSGG	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	47
AvaI	CYCGRG	1 cut(s)	1083
AvaII	GGWCC	2 cut(s)	157, 485
BaeGI	GKGCMC	1 cut(s)	52
BanII	GRGCYC	1 cut(s)	1091
BbvI	GCAGC	7 cut(s)	17, 77, 316, 319, 533, 938, 1064
BccI	CCATC	4 cut(s)	182, 194, 561, 739
BcgI	CGANNNNNNTGC	2 cut(s)	521, 555
BciVI	GTATCC	1 cut(s)	204
BcnI	CCSGG	1 cut(s)	155
BfaI	CTAG	2 cut(s)	587, 599
BfmI	CTRYAG	1 cut(s)	924
BfuAI	ACCTGC	1 cut(s)	931
BfuI	GTATCC	1 cut(s)	204
BglI	GCCNNNNNGGC	1 cut(s)	671
Bme1390I	CCNGG	1 cut(s)	155
Bme18I	GGWCC	2 cut(s)	157, 485
BmeT110I	CYCGRG	1 cut(s)	1083
BmgBI	CACGTC	1 cut(s)	867
BmgT120I	GGNCC	3 cut(s)	157, 485, 887
BmiI	GGNNCC	5 cut(s)	158, 460, 675, 888, 1095
BmrFI	CCNGG	1 cut(s)	155
BmrI	ACTGGG	2 cut(s)	276, 347
BmsI	GCATC	2 cut(s)	848, 1102
BmuI	ACTGGG	2 cut(s)	276, 347
BpmI	CTGGAG	2 cut(s)	477, 808
BpuMI	CCSGG	1 cut(s)	155
BsaHI	GRCGYC	3 cut(s)	126, 232, 1031
BsaJI	CCNNGG	3 cut(s)	60, 426, 955
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse1I	ACTGG	5 cut(s)	271, 353, 579, 791, 1167
BseDI	CCNNGG	3 cut(s)	60, 426, 955
BseGI	GGATG	4 cut(s)	174, 572, 1066, 1101
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMII	CTCAG	2 cut(s)	795, 1170
BseNI	ACTGG	5 cut(s)	271, 353, 579, 791, 1167
BseSI	GKGCMC	1 cut(s)	52
BseXI	GCAGC	7 cut(s)	17, 77, 316, 319, 533, 938, 1064
BshFI	GGCC	4 cut(s)	59, 425, 653, 889
BsiHKCI	CYCGRG	1 cut(s)	1083
BsiSI	CCGG	1 cut(s)	154
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	4 cut(s)	59, 425, 653, 889
BsoBI	CYCGRG	1 cut(s)	1083
Bsp1286I	GDGCHC	2 cut(s)	52, 1091
Bsp143I	GATC	2 cut(s)	270, 601
Bsp19I	CCATGG	1 cut(s)	60
BspACI	CCGC	5 cut(s)	8, 11, 56, 68, 654
BspANI	GGCC	4 cut(s)	59, 425, 653, 889
BspCNI	CTCAG	2 cut(s)	796, 1169
BspLI	GGNNCC	5 cut(s)	158, 460, 675, 888, 1095
BspMAI	CTGCAG	1 cut(s)	928
BspMI	ACCTGC	1 cut(s)	931
BspPI	GGATC	1 cut(s)	278
BspQI	GCTCTTC	1 cut(s)	83
BsrI	ACTGG	5 cut(s)	271, 353, 579, 791, 1167
BssECI	CCNNGG	3 cut(s)	60, 426, 955
BssMI	GATC	2 cut(s)	270, 601
BssNAI	GTATAC	1 cut(s)	151
BssNI	GRCGYC	3 cut(s)	126, 232, 1031
BssT1I	CCWWGG	3 cut(s)	60, 426, 955
Bst1107I	GTATAC	1 cut(s)	151
Bst4CI	ACNGT	2 cut(s)	641, 835
Bst6I	CTCTTC	2 cut(s)	83, 242
BstACI	GRCGYC	3 cut(s)	126, 232, 1031
BstC8I	GCNNGC	4 cut(s)	345, 423, 561, 891
BstDEI	CTNAG	4 cut(s)	407, 804, 985, 1156
BstDSI	CCRYGG	1 cut(s)	60
BstF5I	GGATG	4 cut(s)	174, 572, 1066, 1101
BstHHI	GCGC	1 cut(s)	739
BstKTI	GATC	2 cut(s)	273, 604
BstMBI	GATC	2 cut(s)	270, 601
BstNSI	RCATGY	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	153
BstSFI	CTRYAG	1 cut(s)	924
BstSLI	GKGCMC	1 cut(s)	52
BstV1I	GCAGC	7 cut(s)	17, 77, 316, 319, 533, 938, 1064
BstX2I	RGATCY	1 cut(s)	270
BstXI	CCANNNNNNTGG	2 cut(s)	469, 567
BstYI	RGATCY	1 cut(s)	270
BstZ17I	GTATAC	1 cut(s)	151
BsuI	GTATCC	1 cut(s)	204
BsuRI	GGCC	4 cut(s)	59, 425, 653, 889
BtgI	CCRYGG	1 cut(s)	60
BtgZI	GCGATG	1 cut(s)	172
BtrI	CACGTC	1 cut(s)	867
BtsCI	GGATG	4 cut(s)	174, 572, 1066, 1101
BtsIMutI	CAGTG	1 cut(s)	1164
BveI	ACCTGC	1 cut(s)	931
Cac8I	GCNNGC	4 cut(s)	345, 423, 561, 891
CfoI	GCGC	1 cut(s)	739
Cfr13I	GGNCC	3 cut(s)	157, 485, 887
CseI	GACGC	3 cut(s)	115, 240, 1020
Csp6I	GTAC	2 cut(s)	387, 438
CspCI	CAANNNNNGTGG	2 cut(s)	415, 450
CviAII	CATG	4 cut(s)	53, 61, 95, 649
CviQI	GTAC	2 cut(s)	387, 438
DdeI	CTNAG	4 cut(s)	407, 804, 985, 1156
DpnI	GATC	2 cut(s)	272, 603
DpnII	GATC	2 cut(s)	270, 601
DrdI	GACNNNNNNGTC	1 cut(s)	775
DseDI	GACNNNNNNGTC	1 cut(s)	775
EaeI	YGGCCR	2 cut(s)	57, 651
Eam1104I	CTCTTC	2 cut(s)	83, 242
EarI	CTCTTC	2 cut(s)	83, 242
Eco130I	CCWWGG	3 cut(s)	60, 426, 955
Eco24I	GRGCYC	1 cut(s)	1091
Eco47I	GGWCC	2 cut(s)	157, 485
Eco57I	CTGAAG	1 cut(s)	435
Eco88I	CYCGRG	1 cut(s)	1083
EcoO109I	RGGNCCY	2 cut(s)	157, 887
EcoT14I	CCWWGG	3 cut(s)	60, 426, 955
EcoT38I	GRGCYC	1 cut(s)	1091
ErhI	CCWWGG	3 cut(s)	60, 426, 955
FaeI	CATG	4 cut(s)	56, 64, 98, 652
FalI	AAGNNNNNCTT	2 cut(s)	99, 131
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	4 cut(s)	52, 60, 94, 648
FauNDI	CATATG	1 cut(s)	325
FblI	GTMKAC	1 cut(s)	150
FokI	GGATG	4 cut(s)	161, 579, 1073, 1088
FriOI	GRGCYC	1 cut(s)	1091
FspBI	CTAG	2 cut(s)	587, 599
GlaI	GCGC	1 cut(s)	738
GsuI	CTGGAG	2 cut(s)	477, 808
HaeIII	GGCC	4 cut(s)	59, 425, 653, 889
HapII	CCGG	1 cut(s)	154
HgaI	GACGC	3 cut(s)	115, 240, 1020
HhaI	GCGC	1 cut(s)	739
Hin1I	GRCGYC	3 cut(s)	126, 232, 1031
Hin1II	CATG	4 cut(s)	56, 64, 98, 652
Hin6I	GCGC	1 cut(s)	737
HinP1I	GCGC	1 cut(s)	737
HincII	GTYRAC	5 cut(s)	130, 264, 400, 551, 780
HindII	GTYRAC	5 cut(s)	130, 264, 400, 551, 780
HinfI	GANTC	2 cut(s)	776, 1146
HpaI	GTTAAC	2 cut(s)	264, 400
HpaII	CCGG	1 cut(s)	154
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	8 cut(s)	130, 151, 264, 400, 440, 485, 551, 780
Hpy188I	TCNGA	3 cut(s)	805, 1093, 1189
Hpy188III	TCNNGA	5 cut(s)	456, 587, 1058, 1105, 1138
Hpy8I	GTNNAC	8 cut(s)	130, 151, 264, 400, 440, 485, 551, 780
HpyAV	CCTTC	3 cut(s)	256, 410, 1173
HpyCH4III	ACNGT	2 cut(s)	641, 835
HpyCH4IV	ACGT	4 cut(s)	120, 362, 866, 1077
HpyCH4V	TGCA	8 cut(s)	167, 521, 648, 758, 815, 839, 926, 1115
HpyF3I	CTNAG	4 cut(s)	407, 804, 985, 1156
HpySE526I	ACGT	4 cut(s)	120, 362, 866, 1077
Hsp92I	GRCGYC	3 cut(s)	126, 232, 1031
Hsp92II	CATG	4 cut(s)	56, 64, 98, 652
HspAI	GCGC	1 cut(s)	737
KspAI	GTTAAC	2 cut(s)	264, 400
Kzo9I	GATC	2 cut(s)	270, 601
LguI	GCTCTTC	1 cut(s)	83
LmnI	GCTCC	5 cut(s)	187, 458, 679, 789, 870
Lsp1109I	GCAGC	7 cut(s)	17, 77, 316, 319, 533, 938, 1064
LweI	GCATC	2 cut(s)	848, 1102
MaeI	CTAG	2 cut(s)	587, 599
MaeII	ACGT	4 cut(s)	120, 362, 866, 1077
MaeIII	GTNAC	3 cut(s)	709, 751, 1021
MalI	GATC	2 cut(s)	272, 603
MboI	GATC	2 cut(s)	270, 601
MboII	GAAGA	4 cut(s)	70, 229, 241, 721
MflI	RGATCY	1 cut(s)	270
MhlI	GDGCHC	2 cut(s)	52, 1091
MluCI	AATT	3 cut(s)	99, 850, 999
MlyI	GAGTC	2 cut(s)	785, 1140
MmeI	TCCRAC	1 cut(s)	344
MseI	TTAA	9 cut(s)	117, 263, 380, 399, 467, 849, 998, 1122, 1192
MslI	CAYNNNNRTG	2 cut(s)	445, 467
MspA1I	CMGCKG	3 cut(s)	8, 68, 563
MspI	CCGG	1 cut(s)	154
MspR9I	CCNGG	1 cut(s)	155
NciI	CCSGG	1 cut(s)	155
NcoI	CCATGG	1 cut(s)	60
NdeI	CATATG	1 cut(s)	325
NdeII	GATC	2 cut(s)	270, 601
NlaIII	CATG	4 cut(s)	56, 64, 98, 652
NlaIV	GGNNCC	5 cut(s)	158, 460, 675, 888, 1095
NspI	RCATGY	1 cut(s)	56
PciSI	GCTCTTC	1 cut(s)	83
PleI	GAGTC	2 cut(s)	784, 1140
PpsI	GAGTC	2 cut(s)	784, 1140
PpuMI	RGGWCCY	1 cut(s)	157
PshBI	ATTAAT	2 cut(s)	467, 998
Psp1406I	AACGTT	1 cut(s)	120
Psp5II	RGGWCCY	1 cut(s)	157
PspN4I	GGNNCC	5 cut(s)	158, 460, 675, 888, 1095
PspPI	GGNCC	3 cut(s)	157, 485, 887
PspPPI	RGGWCCY	1 cut(s)	157
PstI	CTGCAG	1 cut(s)	928
PsuI	RGATCY	1 cut(s)	270
PvuII	CAGCTG	1 cut(s)	563
RsaI	GTAC	2 cut(s)	388, 439
RsaNI	GTAC	2 cut(s)	387, 438
RseI	CAYNNNNRTG	2 cut(s)	445, 467
SapI	GCTCTTC	1 cut(s)	83
SaqAI	TTAA	9 cut(s)	117, 263, 380, 399, 467, 849, 998, 1122, 1192
Sau3AI	GATC	2 cut(s)	270, 601
Sau96I	GGNCC	3 cut(s)	157, 485, 887
SchI	GAGTC	2 cut(s)	785, 1140
ScrFI	CCNGG	1 cut(s)	155
SduI	GDGCHC	2 cut(s)	52, 1091
SfaNI	GCATC	2 cut(s)	848, 1102
SfcI	CTRYAG	1 cut(s)	924
SinI	GGWCC	2 cut(s)	157, 485
SmiMI	CAYNNNNRTG	2 cut(s)	445, 467
Sse9I	AATT	3 cut(s)	99, 850, 999
SsiI	CCGC	5 cut(s)	8, 11, 56, 68, 654
SspI	AATATT	1 cut(s)	996
SspMI	CTAG	2 cut(s)	587, 599
StyD4I	CCNGG	1 cut(s)	153
StyI	CCWWGG	3 cut(s)	60, 426, 955
TaaI	ACNGT	2 cut(s)	641, 835
TaiI	ACGT	4 cut(s)	123, 365, 869, 1080
TasI	AATT	3 cut(s)	99, 850, 999
TauI	GCSGC	4 cut(s)	11, 14, 59, 656
Tru1I	TTAA	9 cut(s)	117, 263, 380, 399, 467, 849, 998, 1122, 1192
Tru9I	TTAA	9 cut(s)	117, 263, 380, 399, 467, 849, 998, 1122, 1192
TscAI	CASTG	1 cut(s)	1164
TseI	GCWGC	7 cut(s)	5, 65, 329, 332, 521, 926, 1052
TspDTI	ATGAA	3 cut(s)	239, 599, 711
TspGWI	ACGGA	2 cut(s)	99, 188
TspRI	CASTG	1 cut(s)	1164
VpaK11BI	GGWCC	2 cut(s)	157, 485
VspI	ATTAAT	2 cut(s)	467, 998
XbaI	TCTAGA	1 cut(s)	586
XceI	RCATGY	1 cut(s)	56
XmiI	GTMKAC	1 cut(s)	150
XspI	CTAG	2 cut(s)	587, 599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.