Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8418059.1

Orthogroup ID

OG0004660

Physical Location & Seq

Genomic Coordinates Reverse (-)

352 .. 1072

Gene Structure 721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8418059.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgaataggcgcctcttcatgaccttcttcttccttgggctaactggaatttttggcaaccagcttttgtttcttcttggtcttggctacacaaatccaacttacgctgcggccatacaacctgctatccctgtttttacttttatcctggcagtactcatgggcacagaaagagtgaatttgctcagagctgaagggcaggccaaagtttctggtacacttgtatgtgtctctggtgccatattaatggtcttattccgagggcctgctttgattggaagtacagaaccagacttcacatcacaaagtgagataagtgccagaggtcaaccagagcctgttgggtggttgatgtcctctttcctggaatttggactagatcatttccatatcggagttttatgcttaatagggaactgcatgtgcatggcggctttcctagccattcaggtgcatgactatatactctacctttatctgttgaatctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

163

Amino Acids

17.88

Weight (kDa)

5.82

Isoelectric Point (pI)

42.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT4G19185 AT4G19185
fragaria_vesca	FvH4_2g37290 FvH4_2g37290
malus_domestica	MD08G1001200.v1.1
prunus_persica	Prupe.1G353200_v2.0.a1 Prupe.1G353200_v2.0.a1 Prupe.1G353200_v2.0.a1 Prupe.1G353200_v2.0.a1
pyrus_communis	pycom08g00050 pycom15g00010
rosa_chinensis	RchiOBHm_Chr6g0304411
rosa_laevigata	RLG00000010981
rosa_multiflora	Rmu_co8418059.1_g000001 Rmu_ssc0000218.1_g000048
rosa_roxburghii	Rroxscaffold_7G00163760
rosa_rugosa	Rorug06G0331300
rosa_samantha	Rh6AG444200 Rh6BG458200 Rh6CG457000 Rh6DG443700
rosa_wichuraiana	Rw6G038560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	130
AccB1I	GGYRCC	2 cut(s)	9, 236
AciI	CCGC	2 cut(s)	110, 431
AcoI	YGGCCR	1 cut(s)	111
AcsI	RAATTY	3 cut(s)	48, 178, 368
AcuI	CTGAAG	1 cut(s)	213
AcyI	GRCGYC	1 cut(s)	10
AdeI	CACNNNGTG	1 cut(s)	308
AfaI	GTAC	3 cut(s)	156, 217, 283
AgsI	TTSAA	1 cut(s)	484
AjnI	CCWGG	2 cut(s)	147, 363
AluBI	AGCT	2 cut(s)	64, 191
AluI	AGCT	2 cut(s)	64, 191
Alw26I	GTCTC	1 cut(s)	235
AlwNI	CAGNNNCTG	1 cut(s)	338
AoxI	GGCC	3 cut(s)	111, 201, 263
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	3 cut(s)	48, 178, 368
AseI	ATTAAT	1 cut(s)	245
AspLEI	GCGC	1 cut(s)	12
AspS9I	GGNCC	1 cut(s)	263
BaeGI	GKGCMC	1 cut(s)	167
BaeI	ACNNNNGTAYC	2 cut(s)	207, 240
BanI	GGYRCC	2 cut(s)	9, 236
BbvI	GCAGC	1 cut(s)	94
BciT130I	CCWGG	2 cut(s)	149, 365
BcoDI	GTCTC	1 cut(s)	235
BfaI	CTAG	2 cut(s)	377, 440
BfoI	RGCGCY	1 cut(s)	13
BfuAI	ACCTGC	1 cut(s)	130
BisI	GCNGC	3 cut(s)	108, 111, 432
BlsI	GCNGC	3 cut(s)	109, 112, 433
BmcAI	AGTACT	1 cut(s)	156
Bme1390I	CCNGG	2 cut(s)	149, 365
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	2 cut(s)	11, 238
BmrFI	CCNGG	2 cut(s)	149, 365
BsaHI	GRCGYC	1 cut(s)	10
BsaJI	CCNNGG	2 cut(s)	34, 259
Bse1I	ACTGG	1 cut(s)	49
BseBI	CCWGG	2 cut(s)	149, 365
BseDI	CCNNGG	2 cut(s)	34, 259
BseMII	CTCAG	1 cut(s)	199
BseNI	ACTGG	1 cut(s)	49
BseSI	GKGCMC	1 cut(s)	167
BseXI	GCAGC	1 cut(s)	94
BshFI	GGCC	3 cut(s)	113, 203, 265
BshNI	GGYRCC	2 cut(s)	9, 236
BsmAI	GTCTC	1 cut(s)	235
BsnI	GGCC	3 cut(s)	113, 203, 265
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp143I	GATC	1 cut(s)	379
BspACI	CCGC	2 cut(s)	110, 431
BspANI	GGCC	3 cut(s)	113, 203, 265
BspCNI	CTCAG	1 cut(s)	198
BspHI	TCATGA	1 cut(s)	18
BspLI	GGNNCC	2 cut(s)	11, 238
BspMI	ACCTGC	1 cut(s)	130
BspT107I	GGYRCC	2 cut(s)	9, 236
BsrI	ACTGG	1 cut(s)	49
BssECI	CCNNGG	2 cut(s)	34, 259
BssMI	GATC	1 cut(s)	379
BssNI	GRCGYC	1 cut(s)	10
BssT1I	CCWWGG	1 cut(s)	34
Bst2UI	CCWGG	2 cut(s)	149, 365
Bst6I	CTCTTC	1 cut(s)	20
BstACI	GRCGYC	1 cut(s)	10
BstC8I	GCNNGC	2 cut(s)	201, 267
BstDEI	CTNAG	1 cut(s)	185
BstH2I	RGCGCY	1 cut(s)	13
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	1 cut(s)	382
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	1 cut(s)	379
BstMWI	GCNNNNNNNGC	1 cut(s)	440
BstNI	CCWGG	2 cut(s)	149, 365
BstNSI	RCATGY	1 cut(s)	424
BstSCI	CCNGG	2 cut(s)	147, 363
BstSLI	GKGCMC	1 cut(s)	167
BstV1I	GCAGC	1 cut(s)	94
BstXI	CCANNNNNNTGG	1 cut(s)	247
BsuRI	GGCC	3 cut(s)	113, 203, 265
BveI	ACCTGC	1 cut(s)	130
Cac8I	GCNNGC	2 cut(s)	201, 267
CaiI	CAGNNNCTG	1 cut(s)	338
CciI	TCATGA	1 cut(s)	18
CfoI	GCGC	1 cut(s)	12
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	3 cut(s)	155, 216, 282
CviAII	CATG	5 cut(s)	19, 160, 421, 427, 455
CviQI	GTAC	3 cut(s)	155, 216, 282
DdeI	CTNAG	1 cut(s)	185
DinI	GGCGCC	1 cut(s)	11
DpnI	GATC	1 cut(s)	381
DpnII	GATC	1 cut(s)	379
DraIII	CACNNNGTG	1 cut(s)	308
EaeI	YGGCCR	1 cut(s)	111
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	213
EcoO109I	RGGNCCY	1 cut(s)	263
EcoRII	CCWGG	2 cut(s)	147, 363
EcoT14I	CCWWGG	1 cut(s)	34
EgeI	GGCGCC	1 cut(s)	11
EheI	GGCGCC	1 cut(s)	11
ErhI	CCWWGG	1 cut(s)	34
FaeI	CATG	5 cut(s)	22, 163, 424, 430, 458
FatI	CATG	5 cut(s)	18, 159, 420, 426, 454
Fnu4HI	GCNGC	3 cut(s)	108, 111, 432
Fsp4HI	GCNGC	3 cut(s)	108, 111, 432
FspBI	CTAG	2 cut(s)	377, 440
GlaI	GCGC	1 cut(s)	11
GluI	GCNGC	3 cut(s)	108, 111, 432
HaeII	RGCGCY	1 cut(s)	13
HaeIII	GGCC	3 cut(s)	113, 203, 265
HhaI	GCGC	1 cut(s)	12
Hin1I	GRCGYC	1 cut(s)	10
Hin1II	CATG	5 cut(s)	22, 163, 424, 430, 458
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HincII	GTYRAC	1 cut(s)	329
HindII	GTYRAC	1 cut(s)	329
HinfI	GANTC	1 cut(s)	484
Hpy166II	GTNNAC	2 cut(s)	218, 329
Hpy188I	TCNGA	3 cut(s)	188, 260, 395
Hpy188III	TCNNGA	1 cut(s)	19
Hpy8I	GTNNAC	2 cut(s)	218, 329
HpyAV	CCTTC	2 cut(s)	34, 188
HpyCH4V	TGCA	3 cut(s)	420, 426, 454
HpyF10VI	GCNNNNNNNGC	1 cut(s)	440
HpyF3I	CTNAG	1 cut(s)	185
Hsp92I	GRCGYC	1 cut(s)	10
Hsp92II	CATG	5 cut(s)	22, 163, 424, 430, 458
HspAI	GCGC	1 cut(s)	10
KasI	GGCGCC	1 cut(s)	9
Kzo9I	GATC	1 cut(s)	379
Lsp1109I	GCAGC	1 cut(s)	94
MaeI	CTAG	2 cut(s)	377, 440
MalI	GATC	1 cut(s)	381
MboI	GATC	1 cut(s)	379
MboII	GAAGA	4 cut(s)	7, 19, 22, 65
MhlI	GDGCHC	1 cut(s)	167
MluCI	AATT	3 cut(s)	48, 178, 368
Mly113I	GGCGCC	1 cut(s)	10
MmeI	TCCRAC	1 cut(s)	122
MnlI	CCTC	4 cut(s)	23, 254, 317, 367
MseI	TTAA	2 cut(s)	245, 407
MslI	CAYNNNNRTG	4 cut(s)	223, 245, 425, 449
MspR9I	CCNGG	2 cut(s)	149, 365
MvaI	CCWGG	2 cut(s)	149, 365
MwoI	GCNNNNNNNGC	1 cut(s)	440
NarI	GGCGCC	1 cut(s)	10
NdeII	GATC	1 cut(s)	379
NlaIII	CATG	5 cut(s)	22, 163, 424, 430, 458
NlaIV	GGNNCC	2 cut(s)	11, 238
NspI	RCATGY	1 cut(s)	424
PagI	TCATGA	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	484
PfoI	TCCNGGA	1 cut(s)	363
PkrI	GCNGC	3 cut(s)	109, 112, 433
PluTI	GGCGCC	1 cut(s)	13
PshBI	ATTAAT	1 cut(s)	245
Psp6I	CCWGG	2 cut(s)	147, 363
PspGI	CCWGG	2 cut(s)	147, 363
PspN4I	GGNNCC	2 cut(s)	11, 238
PspPI	GGNCC	1 cut(s)	263
PstNI	CAGNNNCTG	1 cut(s)	338
RsaI	GTAC	3 cut(s)	156, 217, 283
RsaNI	GTAC	3 cut(s)	155, 216, 282
RseI	CAYNNNNRTG	4 cut(s)	223, 245, 425, 449
SaqAI	TTAA	2 cut(s)	245, 407
SatI	GCNGC	3 cut(s)	108, 111, 432
Sau3AI	GATC	1 cut(s)	379
Sau96I	GGNCC	1 cut(s)	263
ScaI	AGTACT	1 cut(s)	156
ScrFI	CCNGG	2 cut(s)	149, 365
SduI	GDGCHC	1 cut(s)	167
SetI	ASST	7 cut(s)	26, 66, 124, 193, 328, 453, 474
SfoI	GGCGCC	1 cut(s)	11
SmiMI	CAYNNNNRTG	4 cut(s)	223, 245, 425, 449
Sse9I	AATT	3 cut(s)	48, 178, 368
SsiI	CCGC	2 cut(s)	110, 431
SspDI	GGCGCC	1 cut(s)	9
SspMI	CTAG	2 cut(s)	377, 440
StyD4I	CCNGG	2 cut(s)	147, 363
StyI	CCWWGG	1 cut(s)	34
TasI	AATT	3 cut(s)	48, 178, 368
TatI	WGTACW	2 cut(s)	154, 281
TauI	GCSGC	2 cut(s)	113, 434
TfiI	GAWTC	1 cut(s)	484
Tru1I	TTAA	2 cut(s)	245, 407
Tru9I	TTAA	2 cut(s)	245, 407
TseI	GCWGC	1 cut(s)	107
TspDTI	ATGAA	2 cut(s)	7, 17
VspI	ATTAAT	1 cut(s)	245
XapI	RAATTY	3 cut(s)	48, 178, 368
XceI	RCATGY	1 cut(s)	424
XspI	CTAG	2 cut(s)	377, 440
ZrmI	AGTACT	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.