Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004660

Physical Location & Seq

Genomic Coordinates Forward (+)

66962957 .. 66968337

Gene Structure 5381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG458200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGTATTGAGTCGAAAATGGTCGGAGAATGGGCACGAGCAAGAACTATGGAAGTTAAGAATCATTAGTAAGTCCACATATATGATGCATTTTGTATTTGAAGTCATACTATGCCTGTGGAATAACATTGAGCAAGCAGCTGTTTTAGGCGTACATCCAAATGGCCCTGATTTGAATAGGAGCAAAGCAGCTTCATCCAGTGCTTGTAATTCTGTAGGTTATGATAATGGTATGATCACGAACGAAAAACCACTGCATTCTGAATTTTTCTTATTTACTGTGTGTAGACGGATTCGACAACCAATGAATAGGCGCCTCTTCATGACCTTCTTCTTCCTTGGGCTAACTGGAATTTTTGGCAACCAGCTTTTGTTTCTTCTTGGTCTTGGCTACACAAATCCAACTTACGCTGCGGCCATACAACCTGCTATCCCTGTTTTTACTTTTATCCTGGCAGTACTCATGGGCACAGAAAGAGTGAATTTTCTCAGAGCTGAAGGGCAGGCCAAAGTTTCTGGTACACTTGTATGTGTTTCTGGTGCCATATTAATGGTCTTATTCCGAGGGCCTGCTTTGATTGGAAGTACAGAACCAGACTTCACATCACAAAGTGAGATAAGTGCCAGAGGTCAACCAGAGCCTGTTGGGTGGTTGATATCCTCTTTCCTGGAATTTGGACTAGATCATTTCCATATCGGAGTTTTATGCTTAATAGGGAACTGCATGTGCATGGCGGCTTTCCTAGCCATTCAGGCTCCACTTTTGAAAAGATATCCTTCCAATCTGTCAGTCACAGCATATTCATACTTATTTGGTGCTTTATTCATGGTGGTGACTGCATTATTTATGACCAATGAATCAACAGACTGGACGTTGACACAGTCTGAGCTTTTTGCAGTTATTTACGCTGGAATTATTGCATCTGCCCTTAATTATGGACTCCTGACATGGTGCAATAAGATCTTGGGGCCTGCTTTGGTTGCTCTTTACAATCCACTTCAACCTGCAGCTTCAGCCTTTTTGTCAAGAGTTTTCCTGGGGAGCCCTATCTATTTGGGAAGTGTTGCAGGGGGTTTACTAATTATTGCTGGTCTTTATGCGGTCACTTGGGCCTCCTTTAGAGAAAGACAAGCAGCTTTGGGTGTTATACCGCCGATTGCTCGGGTCTCCGAACCTCTCATCCACAAAGATGCAACAATTAACAAGACACCATTCCACAGAGTACACGTTTTACCAAAATCATCGTCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

417

Amino Acids

45.79

Weight (kDa)

8.74

Isoelectric Point (pI)

45.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	90 - 185	4.5e-09	EamA-like transporter family
EamA	PF00892	232 - 369	1.8e-14	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT4G19185 AT4G19185
fragaria_vesca	FvH4_2g37290 FvH4_2g37290
malus_domestica	MD08G1001200.v1.1
prunus_persica	Prupe.1G353200_v2.0.a1 Prupe.1G353200_v2.0.a1 Prupe.1G353200_v2.0.a1 Prupe.1G353200_v2.0.a1
pyrus_communis	pycom08g00050 pycom15g00010
rosa_chinensis	RchiOBHm_Chr6g0304411
rosa_laevigata	RLG00000010981
rosa_multiflora	Rmu_co8418059.1_g000001 Rmu_ssc0000218.1_g000048
rosa_roxburghii	Rroxscaffold_7G00163760
rosa_rugosa	Rorug06G0331300
rosa_samantha	Rh6AG444200 Rh6BG458200 Rh6CG457000 Rh6DG443700
rosa_wichuraiana	Rw6G038560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	433, 1012
AccB1I	GGYRCC	2 cut(s)	312, 539
AccI	GTMKAC	1 cut(s)	286
AciI	CCGC	4 cut(s)	413, 734, 1100, 1151
AcoI	YGGCCR	1 cut(s)	414
AcsI	RAATTY	4 cut(s)	263, 351, 481, 671
AcuI	CTGAAG	2 cut(s)	516, 996
AcyI	GRCGYC	1 cut(s)	313
AdeI	CACNNNGTG	1 cut(s)	611
AfaI	GTAC	5 cut(s)	153, 459, 520, 586, 1224
AflIII	ACRYGT	1 cut(s)	1225
AgsI	TTSAA	4 cut(s)	101, 175, 766, 1001
AjnI	CCWGG	3 cut(s)	450, 666, 1035
AloI	GAACNNNNNNTCC	2 cut(s)	1164, 1196
AluBI	AGCT	7 cut(s)	140, 191, 367, 494, 889, 1010, 1136
AluI	AGCT	7 cut(s)	140, 191, 367, 494, 889, 1010, 1136
Alw26I	GTCTC	1 cut(s)	1171
AlwNI	CAGNNNCTG	1 cut(s)	641
Ama87I	CYCGRG	1 cut(s)	1161
AoxI	GGCC	6 cut(s)	163, 414, 504, 566, 968, 1110
ApeKI	GCWGC	5 cut(s)	137, 188, 410, 1007, 1133
ApoI	RAATTY	4 cut(s)	263, 351, 481, 671
ArsI	GACNNNNNNTTYG	1 cut(s)	1229
AseI	ATTAAT	1 cut(s)	548
AspLEI	GCGC	1 cut(s)	315
AspS9I	GGNCC	4 cut(s)	164, 566, 968, 1110
AsuHPI	GGTGA	1 cut(s)	844
AvaI	CYCGRG	1 cut(s)	1161
BaeGI	GKGCMC	2 cut(s)	36, 470
BaeI	ACNNNNGTAYC	2 cut(s)	510, 543
BanI	GGYRCC	2 cut(s)	312, 539
BanII	GRGCYC	1 cut(s)	1046
BauI	CACGAG	1 cut(s)	35
BbvI	GCAGC	5 cut(s)	149, 200, 397, 1019, 1145
BciT130I	CCWGG	3 cut(s)	452, 668, 1037
BclI	TGATCA	1 cut(s)	234
BcoDI	GTCTC	1 cut(s)	1171
BfaI	CTAG	2 cut(s)	680, 743
BfmI	CTRYAG	2 cut(s)	213, 1005
BfoI	RGCGCY	1 cut(s)	316
BfuAI	ACCTGC	2 cut(s)	433, 1012
BglI	GCCNNNNNGGC	1 cut(s)	752
BglII	AGATCT	1 cut(s)	960
BisI	GCNGC	7 cut(s)	138, 189, 411, 414, 735, 1008, 1134
BlsI	GCNGC	7 cut(s)	139, 190, 412, 415, 736, 1009, 1135
BmcAI	AGTACT	1 cut(s)	459
Bme1390I	CCNGG	3 cut(s)	452, 668, 1037
BmeT110I	CYCGRG	1 cut(s)	1161
BmgT120I	GGNCC	4 cut(s)	164, 566, 968, 1110
BmiI	GGNNCC	5 cut(s)	314, 541, 756, 969, 1043
BmrFI	CCNGG	3 cut(s)	452, 668, 1037
BmsI	GCATC	3 cut(s)	75, 929, 1180
BsaHI	GRCGYC	1 cut(s)	313
BsaI	GGTCTC	1 cut(s)	1171
BsaJI	CCNNGG	3 cut(s)	337, 562, 1036
Bse1I	ACTGG	3 cut(s)	198, 352, 872
BseBI	CCWGG	3 cut(s)	452, 668, 1037
BseDI	CCNNGG	3 cut(s)	337, 562, 1036
BseGI	GGATG	3 cut(s)	154, 194, 1179
BseMII	CTCAG	2 cut(s)	502, 876
BseNI	ACTGG	3 cut(s)	198, 352, 872
BseSI	GKGCMC	2 cut(s)	36, 470
BseXI	GCAGC	5 cut(s)	149, 200, 397, 1019, 1145
BshFI	GGCC	6 cut(s)	165, 416, 506, 568, 970, 1112
BshNI	GGYRCC	2 cut(s)	312, 539
BsiHKCI	CYCGRG	1 cut(s)	1161
BsmAI	GTCTC	1 cut(s)	1171
BsmI	GAATGC	1 cut(s)	256
BsnI	GGCC	6 cut(s)	165, 416, 506, 568, 970, 1112
Bso31I	GGTCTC	1 cut(s)	1171
BsoBI	CYCGRG	1 cut(s)	1161
Bsp1286I	GDGCHC	3 cut(s)	36, 470, 1046
Bsp143I	GATC	3 cut(s)	234, 682, 960
BspACI	CCGC	4 cut(s)	413, 734, 1100, 1151
BspANI	GGCC	6 cut(s)	165, 416, 506, 568, 970, 1112
BspCNI	CTCAG	2 cut(s)	501, 877
BspHI	TCATGA	1 cut(s)	321
BspLI	GGNNCC	5 cut(s)	314, 541, 756, 969, 1043
BspMAI	CTGCAG	1 cut(s)	1009
BspMI	ACCTGC	2 cut(s)	433, 1012
BspT107I	GGYRCC	2 cut(s)	312, 539
BspTNI	GGTCTC	1 cut(s)	1171
BsrI	ACTGG	3 cut(s)	198, 352, 872
BssECI	CCNNGG	3 cut(s)	337, 562, 1036
BssMI	GATC	3 cut(s)	234, 682, 960
BssNI	GRCGYC	1 cut(s)	313
BssSI	CACGAG	1 cut(s)	35
BssT1I	CCWWGG	1 cut(s)	337
Bst2BI	CACGAG	1 cut(s)	35
Bst2UI	CCWGG	3 cut(s)	452, 668, 1037
Bst4CI	ACNGT	2 cut(s)	280, 882
Bst6I	CTCTTC	1 cut(s)	323
BstACI	GRCGYC	1 cut(s)	313
BstC8I	GCNNGC	4 cut(s)	135, 504, 570, 972
BstDEI	CTNAG	2 cut(s)	488, 885
BstF5I	GGATG	3 cut(s)	154, 194, 1179
BstH2I	RGCGCY	1 cut(s)	316
BstHHI	GCGC	1 cut(s)	315
BstKTI	GATC	3 cut(s)	237, 685, 963
BstMAI	GTCTC	1 cut(s)	1171
BstMBI	GATC	3 cut(s)	234, 682, 960
BstMWI	GCNNNNNNNGC	4 cut(s)	743, 752, 980, 1013
BstNI	CCWGG	3 cut(s)	452, 668, 1037
BstNSI	RCATGY	1 cut(s)	727
BstSCI	CCNGG	3 cut(s)	450, 666, 1035
BstSFI	CTRYAG	2 cut(s)	213, 1005
BstSLI	GKGCMC	2 cut(s)	36, 470
BstV1I	GCAGC	5 cut(s)	149, 200, 397, 1019, 1145
BstX2I	RGATCY	1 cut(s)	960
BstXI	CCANNNNNNTGG	1 cut(s)	550
BstYI	RGATCY	1 cut(s)	960
BsuRI	GGCC	6 cut(s)	165, 416, 506, 568, 970, 1112
BtsCI	GGATG	3 cut(s)	154, 194, 1179
BtsI	GCAGTG	1 cut(s)	251
BtsIMutI	CAGTG	2 cut(s)	205, 251
BveI	ACCTGC	2 cut(s)	433, 1012
Cac8I	GCNNGC	4 cut(s)	135, 504, 570, 972
CaiI	CAGNNNCTG	1 cut(s)	641
CciI	TCATGA	1 cut(s)	321
CfoI	GCGC	1 cut(s)	315
Cfr13I	GGNCC	4 cut(s)	164, 566, 968, 1110
Csp6I	GTAC	5 cut(s)	152, 458, 519, 585, 1223
CviAII	CATG	6 cut(s)	322, 463, 724, 730, 826, 948
CviQI	GTAC	5 cut(s)	152, 458, 519, 585, 1223
DdeI	CTNAG	2 cut(s)	488, 885
DinI	GGCGCC	1 cut(s)	314
DpnI	GATC	3 cut(s)	236, 684, 962
DpnII	GATC	3 cut(s)	234, 682, 960
DraIII	CACNNNGTG	1 cut(s)	611
EaeI	YGGCCR	1 cut(s)	414
Eam1104I	CTCTTC	1 cut(s)	323
EarI	CTCTTC	1 cut(s)	323
Eco130I	CCWWGG	1 cut(s)	337
Eco24I	GRGCYC	1 cut(s)	1046
Eco31I	GGTCTC	1 cut(s)	1171
Eco32I	GATATC	2 cut(s)	657, 773
Eco57I	CTGAAG	2 cut(s)	516, 996
Eco88I	CYCGRG	1 cut(s)	1161
EcoO109I	RGGNCCY	2 cut(s)	566, 968
EcoRII	CCWGG	3 cut(s)	450, 666, 1035
EcoRV	GATATC	2 cut(s)	657, 773
EcoT14I	CCWWGG	1 cut(s)	337
EcoT22I	ATGCAT	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	1046
EgeI	GGCGCC	1 cut(s)	314
EheI	GGCGCC	1 cut(s)	314
ErhI	CCWWGG	1 cut(s)	337
FaeI	CATG	6 cut(s)	325, 466, 727, 733, 829, 951
FalI	AAGNNNNNCTT	2 cut(s)	760, 792
FatI	CATG	6 cut(s)	321, 462, 723, 729, 825, 947
FbaI	TGATCA	1 cut(s)	234
FblI	GTMKAC	1 cut(s)	286
Fnu4HI	GCNGC	7 cut(s)	138, 189, 411, 414, 735, 1008, 1134
FokI	GGATG	3 cut(s)	141, 181, 1166
FriOI	GRGCYC	1 cut(s)	1046
Fsp4HI	GCNGC	7 cut(s)	138, 189, 411, 414, 735, 1008, 1134
FspBI	CTAG	2 cut(s)	680, 743
GlaI	GCGC	1 cut(s)	314
GluI	GCNGC	7 cut(s)	138, 189, 411, 414, 735, 1008, 1134
HaeII	RGCGCY	1 cut(s)	316
HaeIII	GGCC	6 cut(s)	165, 416, 506, 568, 970, 1112
HhaI	GCGC	1 cut(s)	315
Hin1I	GRCGYC	1 cut(s)	313
Hin1II	CATG	6 cut(s)	325, 466, 727, 733, 829, 951
Hin6I	GCGC	1 cut(s)	313
HinP1I	GCGC	1 cut(s)	313
HincII	GTYRAC	2 cut(s)	632, 876
HindII	GTYRAC	2 cut(s)	632, 876
HinfI	GANTC	5 cut(s)	10, 60, 292, 857, 939
HphI	GGTGA	1 cut(s)	844
Hpy166II	GTNNAC	7 cut(s)	75, 287, 521, 632, 876, 1076, 1225
Hpy188I	TCNGA	8 cut(s)	25, 262, 491, 563, 698, 886, 1171, 1249
Hpy188III	TCNNGA	4 cut(s)	238, 322, 943, 1026
Hpy8I	GTNNAC	7 cut(s)	75, 287, 521, 632, 876, 1076, 1225
HpyAV	CCTTC	3 cut(s)	337, 491, 786
HpyCH4III	ACNGT	2 cut(s)	280, 882
HpyCH4IV	ACGT	2 cut(s)	872, 1227
HpyF10VI	GCNNNNNNNGC	4 cut(s)	743, 752, 980, 1013
HpyF3I	CTNAG	2 cut(s)	488, 885
HpySE526I	ACGT	2 cut(s)	872, 1227
Hsp92I	GRCGYC	1 cut(s)	313
Hsp92II	CATG	6 cut(s)	325, 466, 727, 733, 829, 951
HspAI	GCGC	1 cut(s)	313
KasI	GGCGCC	1 cut(s)	312
Ksp22I	TGATCA	1 cut(s)	234
Kzo9I	GATC	3 cut(s)	234, 682, 960
LmnI	GCTCC	3 cut(s)	180, 760, 1041
Lsp1109I	GCAGC	5 cut(s)	149, 200, 397, 1019, 1145
LweI	GCATC	3 cut(s)	75, 929, 1180
MaeI	CTAG	2 cut(s)	680, 743
MaeII	ACGT	2 cut(s)	872, 1227
MaeIII	GTNAC	3 cut(s)	790, 832, 1102
MalI	GATC	3 cut(s)	236, 684, 962
MboI	GATC	3 cut(s)	234, 682, 960
MboII	GAAGA	4 cut(s)	310, 322, 325, 368
MflI	RGATCY	1 cut(s)	960
MhlI	GDGCHC	3 cut(s)	36, 470, 1046
MluCI	AATT	9 cut(s)	208, 263, 351, 481, 671, 912, 931, 1080, 1197
Mly113I	GGCGCC	1 cut(s)	313
MlyI	GAGTC	2 cut(s)	19, 933
MmeI	TCCRAC	1 cut(s)	425
MnlI	CCTC	6 cut(s)	326, 557, 620, 670, 1123, 1185
Mph1103I	ATGCAT	1 cut(s)	90
MseI	TTAA	6 cut(s)	56, 548, 710, 930, 1200, 1252
MslI	CAYNNNNRTG	7 cut(s)	80, 159, 526, 548, 728, 830, 1188
MspA1I	CMGCKG	1 cut(s)	140
MspR9I	CCNGG	3 cut(s)	452, 668, 1037
Mva1269I	GAATGC	1 cut(s)	256
MvaI	CCWGG	3 cut(s)	452, 668, 1037
MwoI	GCNNNNNNNGC	4 cut(s)	743, 752, 980, 1013
NarI	GGCGCC	1 cut(s)	313
NdeII	GATC	3 cut(s)	234, 682, 960
NlaIII	CATG	6 cut(s)	325, 466, 727, 733, 829, 951
NlaIV	GGNNCC	5 cut(s)	314, 541, 756, 969, 1043
NmuCI	GTSAC	3 cut(s)	790, 832, 1102
NsiI	ATGCAT	1 cut(s)	90
NspI	RCATGY	1 cut(s)	727
PagI	TCATGA	1 cut(s)	321
PctI	GAATGC	1 cut(s)	256
PfeI	GAWTC	3 cut(s)	60, 292, 857
PflFI	GACNNNGTC	1 cut(s)	880
PfoI	TCCNGGA	1 cut(s)	666
PkrI	GCNGC	7 cut(s)	139, 190, 412, 415, 736, 1009, 1135
PleI	GAGTC	2 cut(s)	18, 933
PluTI	GGCGCC	1 cut(s)	316
PpsI	GAGTC	2 cut(s)	18, 933
PshBI	ATTAAT	1 cut(s)	548
Psp6I	CCWGG	3 cut(s)	450, 666, 1035
PspGI	CCWGG	3 cut(s)	450, 666, 1035
PspN4I	GGNNCC	5 cut(s)	314, 541, 756, 969, 1043
PspPI	GGNCC	4 cut(s)	164, 566, 968, 1110
PstI	CTGCAG	1 cut(s)	1009
PstNI	CAGNNNCTG	1 cut(s)	641
PsuI	RGATCY	1 cut(s)	960
PsyI	GACNNNGTC	1 cut(s)	880
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	5 cut(s)	153, 459, 520, 586, 1224
RsaNI	GTAC	5 cut(s)	152, 458, 519, 585, 1223
RseI	CAYNNNNRTG	7 cut(s)	80, 159, 526, 548, 728, 830, 1188
SaqAI	TTAA	6 cut(s)	56, 548, 710, 930, 1200, 1252
SatI	GCNGC	7 cut(s)	138, 189, 411, 414, 735, 1008, 1134
Sau3AI	GATC	3 cut(s)	234, 682, 960
Sau96I	GGNCC	4 cut(s)	164, 566, 968, 1110
ScaI	AGTACT	1 cut(s)	459
SchI	GAGTC	2 cut(s)	19, 933
ScrFI	CCNGG	3 cut(s)	452, 668, 1037
SduI	GDGCHC	3 cut(s)	36, 470, 1046
SfaNI	GCATC	3 cut(s)	75, 929, 1180
SfcI	CTRYAG	2 cut(s)	213, 1005
SfoI	GGCGCC	1 cut(s)	314
SmiMI	CAYNNNNRTG	7 cut(s)	80, 159, 526, 548, 728, 830, 1188
Sse9I	AATT	9 cut(s)	208, 263, 351, 481, 671, 912, 931, 1080, 1197
SsiI	CCGC	4 cut(s)	413, 734, 1100, 1151
SspDI	GGCGCC	1 cut(s)	312
SspMI	CTAG	2 cut(s)	680, 743
StyD4I	CCNGG	3 cut(s)	450, 666, 1035
StyI	CCWWGG	1 cut(s)	337
TaaI	ACNGT	2 cut(s)	280, 882
TaiI	ACGT	2 cut(s)	875, 1230
TaqI	TCGA	2 cut(s)	13, 295
TasI	AATT	9 cut(s)	208, 263, 351, 481, 671, 912, 931, 1080, 1197
TatI	WGTACW	3 cut(s)	457, 584, 1222
TauI	GCSGC	2 cut(s)	416, 737
TfiI	GAWTC	3 cut(s)	60, 292, 857
Tru1I	TTAA	6 cut(s)	56, 548, 710, 930, 1200, 1252
Tru9I	TTAA	6 cut(s)	56, 548, 710, 930, 1200, 1252
TscAI	CASTG	2 cut(s)	205, 258
TseFI	GTSAC	3 cut(s)	790, 832, 1102
TseI	GCWGC	5 cut(s)	137, 188, 410, 1007, 1133
Tsp45I	GTSAC	3 cut(s)	790, 832, 1102
TspDTI	ATGAA	6 cut(s)	183, 310, 320, 792, 814, 870
TspGWI	ACGGA	1 cut(s)	304
TspRI	CASTG	2 cut(s)	205, 258
Tth111I	GACNNNGTC	1 cut(s)	880
VspI	ATTAAT	1 cut(s)	548
XapI	RAATTY	4 cut(s)	263, 351, 481, 671
XceI	RCATGY	1 cut(s)	727
XmiI	GTMKAC	1 cut(s)	286
XspI	CTAG	2 cut(s)	680, 743
ZrmI	AGTACT	1 cut(s)	459
Zsp2I	ATGCAT	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.