Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004660

Physical Location & Seq

Genomic Coordinates Forward (+)

27181644 .. 27186917

Gene Structure 5274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g37290.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGTCAGCAGCAGTGGCTTCTTCGTCAGCAGCAGCAGTTGGAGGAGATGTTGTATGGAAGGCTCACGCGGCCATGGCGCTGGTTCAGCTCTTCAACGGAGGCTATCATGTAATTACCAAAGTAGCCCTCAATGTGGGTATCAACCAGCTTGTCTTCTGTGTCTACCGAGACCTTCTTGCTCTCGCCATTCTTGCTCCAATCGCCTATGTCCGTGAAAAACGGATTCGGCAACCAATGAATAGACGCCTCTTCGTGTCCTTCTTCTTTATTGGGCTAACTGGGATTTTTGGCAACCAGCTTTTGTTTCTTATTGGTCTTGGCTACACAAATCCTACATACGCTGCTGCCATACAACCTTCTATCCCTGTTTTTACTTTTATCCTGGCAGTGCTCATGGGCACAGAAAGAGTGAATTTGCTCAGGGTTGAAGGGCAGGCGAAAGTTTCTGGTACACTTGTTTGTGTTTCTGGTGCCATATTCATGGTCTTATTCCGAGGGCCTGCTTTGATTGGAAGTACAGAGCCAGACTTTGCATCACAAAGTGAGATAAGTGCCAAAGGTCAACCAGAGCCTGTTGGGTGGTTGATGTCCTCTTTCCTGGATTTTGGGTTTGATAATTTTCATCTTGGAGTTTTATGCTTGATAGGGAACTGCATGTGCATGGCGGTTTTCCTAGCCATTCAGGCTCCACTTTTGAAAAGATATCCTGCCAATCTGTCAGTGTCAGCATATTCGTACTTATTTGGTGCTTCTTTCATGGTGGTGACTGCATTATTTATGACCAATGAATCAACAGACTGGAGCTTGACCCAGTCCGAGCTTTTTGCAGTTCTTTACGCTGGAATCATTGCATCTGCCCTTAATTATGGACTCCTGACGTGGTGCAATAAGATCTTGGGGCCTGCTTTGGTTGCTCTTTACAATCCACTTCAACCTGCAGCTTCAGCCTTTTTGTCAAGAGTTTTCCTCGGGAGCCCTATTTATTTGGGAAGTGTTGCAGGGGGTTTGCTAATTATTGCTGGTCTTTATGTGGTGACTTGGGCCTCCTTTAGAGAAAGGCAAGCAGCTTTGGGTGTTATACCGCCAATTGCTCGAGTCTCTGAACCTCTCATCCACAAAGATGCAAAGACACCATTCCAGAGAGTACACATTTTACCAAAATCATCGTCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

392

Amino Acids

42.06

Weight (kDa)

9.11

Isoelectric Point (pI)

37.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	23 - 161	5.1e-15	EamA-like transporter family
EamA	PF00892	209 - 346	8.2e-14	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT4G19185 AT4G19185
fragaria_vesca	FvH4_2g37290 FvH4_2g37290
malus_domestica	MD08G1001200.v1.1
prunus_persica	Prupe.1G353200_v2.0.a1 Prupe.1G353200_v2.0.a1 Prupe.1G353200_v2.0.a1 Prupe.1G353200_v2.0.a1
pyrus_communis	pycom08g00050 pycom15g00010
rosa_chinensis	RchiOBHm_Chr6g0304411
rosa_laevigata	RLG00000010981
rosa_multiflora	Rmu_co8418059.1_g000001 Rmu_ssc0000218.1_g000048
rosa_roxburghii	Rroxscaffold_7G00163760
rosa_rugosa	Rorug06G0331300
rosa_samantha	Rh6AG444200 Rh6BG458200 Rh6CG457000 Rh6DG443700
rosa_wichuraiana	Rw6G038560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	943
AccB1I	GGYRCC	1 cut(s)	470
AccI	GTMKAC	1 cut(s)	162
AccII	CGCG	1 cut(s)	68
AciI	CCGC	3 cut(s)	68, 665, 1082
AcoI	YGGCCR	1 cut(s)	69
AcsI	RAATTY	1 cut(s)	412
AcuI	CTGAAG	1 cut(s)	927
AcyI	GRCGYC	1 cut(s)	244
AdeI	CACNNNGTG	1 cut(s)	542
AfaI	GTAC	4 cut(s)	451, 517, 737, 1146
AfiI	CCNNNNNNNGG	1 cut(s)	133
AgsI	TTSAA	4 cut(s)	94, 428, 697, 932
AjiI	CACGTC	1 cut(s)	879
AjnI	CCWGG	2 cut(s)	381, 597
AloI	GAACNNNNNNTCC	2 cut(s)	1095, 1127
AluBI	AGCT	7 cut(s)	88, 148, 298, 804, 820, 941, 1067
AluI	AGCT	7 cut(s)	88, 148, 298, 804, 820, 941, 1067
Alw21I	GWGCWC	1 cut(s)	393
Alw26I	GTCTC	2 cut(s)	162, 1102
AlwNI	CAGNNNCTG	1 cut(s)	572
Ama87I	CYCGRG	2 cut(s)	968, 1092
AoxI	GGCC	4 cut(s)	69, 497, 899, 1041
ApeKI	GCWGC	7 cut(s)	8, 29, 32, 341, 344, 938, 1064
ApoI	RAATTY	1 cut(s)	412
ArsI	GACNNNNNNTTYG	1 cut(s)	1151
AspLEI	GCGC	1 cut(s)	79
AspS9I	GGNCC	3 cut(s)	497, 899, 1041
AsuHPI	GGTGA	2 cut(s)	775, 1045
AvaI	CYCGRG	2 cut(s)	968, 1092
BaeGI	GKGCMC	1 cut(s)	401
BaeI	ACNNNNGTAYC	2 cut(s)	441, 474
BanI	GGYRCC	1 cut(s)	470
BanII	GRGCYC	1 cut(s)	977
BbsI	GAAGAC	1 cut(s)	145
Bbv12I	GWGCWC	1 cut(s)	393
BbvI	GCAGC	7 cut(s)	20, 41, 44, 328, 331, 950, 1076
BcgI	CGANNNNNNTGC	2 cut(s)	806, 840
BciT130I	CCWGG	2 cut(s)	383, 599
BcoDI	GTCTC	2 cut(s)	162, 1102
BfaI	CTAG	1 cut(s)	674
BfmI	CTRYAG	1 cut(s)	936
BfoI	RGCGCY	1 cut(s)	80
BfuAI	ACCTGC	1 cut(s)	943
BglI	GCCNNNNNGGC	1 cut(s)	683
BglII	AGATCT	1 cut(s)	891
BisI	GCNGC	8 cut(s)	9, 30, 33, 69, 342, 345, 939, 1065
BlsI	GCNGC	8 cut(s)	10, 31, 34, 70, 343, 346, 940, 1066
Bme1390I	CCNGG	2 cut(s)	383, 599
BmeT110I	CYCGRG	2 cut(s)	968, 1092
BmgBI	CACGTC	1 cut(s)	879
BmgT120I	GGNCC	3 cut(s)	497, 899, 1041
BmiI	GGNNCC	4 cut(s)	472, 687, 900, 974
BmrFI	CCNGG	2 cut(s)	383, 599
BmrI	ACTGGG	2 cut(s)	288, 805
BmsI	GCATC	3 cut(s)	542, 860, 1111
BmuI	ACTGGG	2 cut(s)	288, 805
BpiI	GAAGAC	1 cut(s)	145
BplI	GAGNNNNNCTC	2 cut(s)	951, 983
BpmI	CTGGAG	1 cut(s)	820
Bpu10I	CCTNAGC	1 cut(s)	419
BsaHI	GRCGYC	1 cut(s)	244
BsaI	GGTCTC	1 cut(s)	162
BsaJI	CCNNGG	3 cut(s)	72, 493, 967
BsaXI	ACNNNNNCTCC	4 cut(s)	33, 36, 63, 66
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse1I	ACTGG	3 cut(s)	283, 803, 811
Bse3DI	GCAATG	1 cut(s)	846
BseBI	CCWGG	2 cut(s)	383, 599
BseDI	CCNNGG	3 cut(s)	72, 493, 967
BseGI	GGATG	1 cut(s)	1110
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMI	GCAATG	1 cut(s)	846
BseMII	CTCAG	1 cut(s)	433
BseNI	ACTGG	3 cut(s)	283, 803, 811
BseRI	GAGGAG	1 cut(s)	57
BseSI	GKGCMC	1 cut(s)	401
BseXI	GCAGC	7 cut(s)	20, 41, 44, 328, 331, 950, 1076
Bsh1236I	CGCG	1 cut(s)	68
BshFI	GGCC	4 cut(s)	71, 499, 901, 1043
BshNI	GGYRCC	1 cut(s)	470
BsiHKAI	GWGCWC	1 cut(s)	393
BsiHKCI	CYCGRG	2 cut(s)	968, 1092
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	2 cut(s)	162, 1102
BsnI	GGCC	4 cut(s)	71, 499, 901, 1043
Bso31I	GGTCTC	1 cut(s)	162
BsoBI	CYCGRG	2 cut(s)	968, 1092
Bsp1286I	GDGCHC	3 cut(s)	393, 401, 977
Bsp143I	GATC	1 cut(s)	891
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	3 cut(s)	68, 665, 1082
BspANI	GGCC	4 cut(s)	71, 499, 901, 1043
BspCNI	CTCAG	1 cut(s)	432
BspFNI	CGCG	1 cut(s)	68
BspLI	GGNNCC	4 cut(s)	472, 687, 900, 974
BspMAI	CTGCAG	1 cut(s)	940
BspMI	ACCTGC	1 cut(s)	943
BspQI	GCTCTTC	1 cut(s)	95
BspT107I	GGYRCC	1 cut(s)	470
BspTNI	GGTCTC	1 cut(s)	162
BsrDI	GCAATG	1 cut(s)	846
BsrI	ACTGG	3 cut(s)	283, 803, 811
BssECI	CCNNGG	3 cut(s)	72, 493, 967
BssMI	GATC	1 cut(s)	891
BssNI	GRCGYC	1 cut(s)	244
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	2 cut(s)	383, 599
Bst6I	CTCTTC	2 cut(s)	95, 254
BstACI	GRCGYC	1 cut(s)	244
BstC8I	GCNNGC	4 cut(s)	435, 501, 903, 1062
BstDEI	CTNAG	1 cut(s)	419
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	1110
BstFNI	CGCG	1 cut(s)	68
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	1 cut(s)	79
BstKTI	GATC	1 cut(s)	894
BstMAI	GTCTC	2 cut(s)	162, 1102
BstMBI	GATC	1 cut(s)	891
BstMWI	GCNNNNNNNGC	9 cut(s)	14, 68, 74, 85, 191, 200, 683, 911, 944
BstNI	CCWGG	2 cut(s)	383, 599
BstNSI	RCATGY	1 cut(s)	658
BstSCI	CCNGG	2 cut(s)	381, 597
BstSFI	CTRYAG	1 cut(s)	936
BstSLI	GKGCMC	1 cut(s)	401
BstUI	CGCG	1 cut(s)	68
BstV1I	GCAGC	7 cut(s)	20, 41, 44, 328, 331, 950, 1076
BstV2I	GAAGAC	1 cut(s)	145
BstX2I	RGATCY	1 cut(s)	891
BstXI	CCANNNNNNTGG	2 cut(s)	79, 481
BstYI	RGATCY	1 cut(s)	891
BsuRI	GGCC	4 cut(s)	71, 499, 901, 1043
BtgI	CCRYGG	1 cut(s)	72
BtrI	CACGTC	1 cut(s)	879
BtsCI	GGATG	1 cut(s)	1110
BtsI	GCAGTG	2 cut(s)	18, 393
BtsIMutI	CAGTG	3 cut(s)	18, 393, 726
BveI	ACCTGC	1 cut(s)	943
Cac8I	GCNNGC	4 cut(s)	435, 501, 903, 1062
CaiI	CAGNNNCTG	1 cut(s)	572
CfoI	GCGC	1 cut(s)	79
Cfr13I	GGNCC	3 cut(s)	497, 899, 1041
CseI	GACGC	1 cut(s)	252
Csp6I	GTAC	4 cut(s)	450, 516, 736, 1145
CviAII	CATG	7 cut(s)	73, 107, 394, 481, 655, 661, 757
CviQI	GTAC	4 cut(s)	450, 516, 736, 1145
DdeI	CTNAG	1 cut(s)	419
DpnI	GATC	1 cut(s)	893
DpnII	GATC	1 cut(s)	891
DraIII	CACNNNGTG	1 cut(s)	542
EaeI	YGGCCR	1 cut(s)	69
Eam1104I	CTCTTC	2 cut(s)	95, 254
EarI	CTCTTC	2 cut(s)	95, 254
Eco130I	CCWWGG	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	977
Eco31I	GGTCTC	1 cut(s)	162
Eco32I	GATATC	1 cut(s)	704
Eco57I	CTGAAG	1 cut(s)	927
Eco88I	CYCGRG	2 cut(s)	968, 1092
EcoO109I	RGGNCCY	2 cut(s)	497, 899
EcoRII	CCWGG	2 cut(s)	381, 597
EcoRV	GATATC	1 cut(s)	704
EcoT14I	CCWWGG	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	977
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	7 cut(s)	76, 110, 397, 484, 658, 664, 760
FatI	CATG	7 cut(s)	72, 106, 393, 480, 654, 660, 756
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	8 cut(s)	9, 30, 33, 69, 342, 345, 939, 1065
FokI	GGATG	1 cut(s)	1097
FriOI	GRGCYC	1 cut(s)	977
Fsp4HI	GCNGC	8 cut(s)	9, 30, 33, 69, 342, 345, 939, 1065
FspBI	CTAG	1 cut(s)	674
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	8 cut(s)	9, 30, 33, 69, 342, 345, 939, 1065
GsuI	CTGGAG	1 cut(s)	820
HaeII	RGCGCY	1 cut(s)	80
HaeIII	GGCC	4 cut(s)	71, 499, 901, 1043
HgaI	GACGC	1 cut(s)	252
HhaI	GCGC	1 cut(s)	79
Hin1I	GRCGYC	1 cut(s)	244
Hin1II	CATG	7 cut(s)	76, 110, 397, 484, 658, 664, 760
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HincII	GTYRAC	1 cut(s)	563
HindII	GTYRAC	1 cut(s)	563
HinfI	GANTC	5 cut(s)	223, 788, 843, 870, 1095
HphI	GGTGA	2 cut(s)	775, 1045
Hpy166II	GTNNAC	4 cut(s)	163, 452, 563, 1147
Hpy188I	TCNGA	4 cut(s)	494, 817, 1102, 1171
Hpy188III	TCNNGA	4 cut(s)	874, 957, 970, 1138
Hpy8I	GTNNAC	4 cut(s)	163, 452, 563, 1147
HpyAV	CCTTC	5 cut(s)	52, 182, 268, 366, 422
HpyCH4IV	ACGT	1 cut(s)	878
HpyF10VI	GCNNNNNNNGC	9 cut(s)	14, 68, 74, 85, 191, 200, 683, 911, 944
HpyF3I	CTNAG	1 cut(s)	419
HpySE526I	ACGT	1 cut(s)	878
Hsp92I	GRCGYC	1 cut(s)	244
Hsp92II	CATG	7 cut(s)	76, 110, 397, 484, 658, 664, 760
HspAI	GCGC	1 cut(s)	77
Kzo9I	GATC	1 cut(s)	891
LguI	GCTCTTC	1 cut(s)	95
LmnI	GCTCC	4 cut(s)	199, 691, 801, 972
Lsp1109I	GCAGC	7 cut(s)	20, 41, 44, 328, 331, 950, 1076
LweI	GCATC	3 cut(s)	542, 860, 1111
MaeI	CTAG	1 cut(s)	674
MaeII	ACGT	1 cut(s)	878
MaeIII	GTNAC	2 cut(s)	763, 1033
MalI	GATC	1 cut(s)	893
MboI	GATC	1 cut(s)	891
MboII	GAAGA	5 cut(s)	12, 82, 145, 241, 253
MfeI	CAATTG	1 cut(s)	1086
MflI	RGATCY	1 cut(s)	891
MhlI	GDGCHC	3 cut(s)	393, 401, 977
MluCI	AATT	6 cut(s)	111, 412, 616, 862, 1011, 1086
MlyI	GAGTC	2 cut(s)	864, 1104
MmeI	TCCRAC	1 cut(s)	19
MnlI	CCTC	9 cut(s)	35, 92, 137, 257, 488, 601, 977, 1054, 1116
MseI	TTAA	2 cut(s)	861, 1174
MslI	CAYNNNNRTG	4 cut(s)	479, 659, 761, 1119
MspR9I	CCNGG	2 cut(s)	383, 599
MunI	CAATTG	1 cut(s)	1086
MvaI	CCWGG	2 cut(s)	383, 599
MvnI	CGCG	1 cut(s)	68
MwoI	GCNNNNNNNGC	9 cut(s)	14, 68, 74, 85, 191, 200, 683, 911, 944
NcoI	CCATGG	1 cut(s)	72
NdeII	GATC	1 cut(s)	891
NlaIII	CATG	7 cut(s)	76, 110, 397, 484, 658, 664, 760
NlaIV	GGNNCC	4 cut(s)	472, 687, 900, 974
NmuCI	GTSAC	2 cut(s)	763, 1033
NspI	RCATGY	1 cut(s)	658
PaeR7I	CTCGAG	1 cut(s)	1092
PciSI	GCTCTTC	1 cut(s)	95
PfeI	GAWTC	3 cut(s)	223, 788, 843
PflFI	GACNNNGTC	1 cut(s)	811
PfoI	TCCNGGA	1 cut(s)	597
PkrI	GCNGC	8 cut(s)	10, 31, 34, 70, 343, 346, 940, 1066
PleI	GAGTC	2 cut(s)	864, 1103
PpsI	GAGTC	2 cut(s)	864, 1103
Psp6I	CCWGG	2 cut(s)	381, 597
PspGI	CCWGG	2 cut(s)	381, 597
PspN4I	GGNNCC	4 cut(s)	472, 687, 900, 974
PspPI	GGNCC	3 cut(s)	497, 899, 1041
PspXI	VCTCGAGB	1 cut(s)	1092
PstI	CTGCAG	1 cut(s)	940
PstNI	CAGNNNCTG	1 cut(s)	572
PsuI	RGATCY	1 cut(s)	891
PsyI	GACNNNGTC	1 cut(s)	811
RsaI	GTAC	4 cut(s)	451, 517, 737, 1146
RsaNI	GTAC	4 cut(s)	450, 516, 736, 1145
RseI	CAYNNNNRTG	4 cut(s)	479, 659, 761, 1119
SapI	GCTCTTC	1 cut(s)	95
SaqAI	TTAA	2 cut(s)	861, 1174
SatI	GCNGC	8 cut(s)	9, 30, 33, 69, 342, 345, 939, 1065
Sau3AI	GATC	1 cut(s)	891
Sau96I	GGNCC	3 cut(s)	497, 899, 1041
SchI	GAGTC	2 cut(s)	864, 1104
ScrFI	CCNGG	2 cut(s)	383, 599
SduI	GDGCHC	3 cut(s)	393, 401, 977
SfaNI	GCATC	3 cut(s)	542, 860, 1111
SfcI	CTRYAG	1 cut(s)	936
Sfr274I	CTCGAG	1 cut(s)	1092
SlaI	CTCGAG	1 cut(s)	1092
SmiMI	CAYNNNNRTG	4 cut(s)	479, 659, 761, 1119
SmlI	CTYRAG	1 cut(s)	1092
SmoI	CTYRAG	1 cut(s)	1092
Sse9I	AATT	6 cut(s)	111, 412, 616, 862, 1011, 1086
SsiI	CCGC	3 cut(s)	68, 665, 1082
SspMI	CTAG	1 cut(s)	674
StyD4I	CCNGG	2 cut(s)	381, 597
StyI	CCWWGG	1 cut(s)	72
TaiI	ACGT	1 cut(s)	881
TaqI	TCGA	1 cut(s)	1093
TasI	AATT	6 cut(s)	111, 412, 616, 862, 1011, 1086
TatI	WGTACW	2 cut(s)	515, 1144
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	3 cut(s)	223, 788, 843
Tru1I	TTAA	2 cut(s)	861, 1174
Tru9I	TTAA	2 cut(s)	861, 1174
TscAI	CASTG	3 cut(s)	18, 393, 726
TseFI	GTSAC	2 cut(s)	763, 1033
TseI	GCWGC	7 cut(s)	8, 29, 32, 341, 344, 938, 1064
Tsp45I	GTSAC	2 cut(s)	763, 1033
TspDTI	ATGAA	5 cut(s)	251, 469, 611, 745, 801
TspGWI	ACGGA	3 cut(s)	111, 200, 235
TspRI	CASTG	3 cut(s)	18, 393, 726
Tth111I	GACNNNGTC	1 cut(s)	811
XapI	RAATTY	1 cut(s)	412
XceI	RCATGY	1 cut(s)	658
XhoI	CTCGAG	1 cut(s)	1092
XmiI	GTMKAC	1 cut(s)	162
XspI	CTAG	1 cut(s)	674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.