Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004660

Physical Location & Seq

Genomic Coordinates Reverse (-)

63195584 .. 63201194

Gene Structure 5611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG457000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGCCCTGAGGAGCAAAGCAGCTTCATCCGGTGCATGTAATTCTGTAGGTTATGATAATGGTATGATCATGAACGAAAAACCACTGCATTCTGAATTTTTCTTATTTACTGTGTGTAGACGGATTCGACAACCAATGAATAGGCGCCTCTTCATGACCTTCTTCTTCCTTGGGCTAACTGGAATTTTTGGCAACCAGCTTTTGTTTCTTCTTGGTCTTGGCTACACAAATCCAACTTACGCTGCGGCCATACAACCTGCTATCCCTGTTTTTACTTTTATCCTGGCAGTACTCATGGGCACAGAAAGAGTGAATTTGCTCAGAGCTGAAGGGCAGGCCAAAGTTTCTGGTACACTTGTATGTGTTTCTGGTGCCATATTAATGGTCTTATTCCGAGGGCCTGCTTTGATTGGAAGTACAGAACCAGACTTCACATCACAAAGTGAGATAAGTGCCAGAGGTCAACCAGAGCCTGTTGGGTGGTTCATGTCCTCTTTCCTGGAATTTGGACTAGATCATTTCCATATCGGAGTTTTATGCTTAATAGGGAACTGCATGTGCATGGCGGCTTTCCTAGCCATTCAGGCTCCACTTTTGAAAAGATATCCTTCCAATCTGTCAGTCACAGCATATTCATACTTATTTGGTGCTTTATTCATGGTGGTGACTGCATTATTTATGACCAATGAATCAACAGACTGGACGTTGACACAGTCCGAGCTTTTTGCAGTTATTTACGCTGGAATTGTTGCATCGGCCCTTAATTATGGACTCCTGACATGGTGCAATAAGATCTTGGGGCCTGCTTTGGTTGCTCTTTACAATCCACTTCAACCTGCAGCTTCAGCCTTTTTGTCAAGAGTTTTCCTAGGGAGCCCTATCTATTTGGGAAGTGTTGCAGGGGGTTTACTAATTATTGCTGGTCTTTATGTGGTCACTTGGGCCTCCTTTAGAGAAAGACAAGCAGCTTTGGGTGTTATACCGCCGATTGCTCGGGTCTCCGAACCTCTCATCCACAAAGATGCAACAATTAACAAGACACCATTCCACAGAGTACACGTTTTACCAAAATCATCGTCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

361

Amino Acids

39.23

Weight (kDa)

8.97

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	34 - 129	3.7e-09	EamA-like transporter family
EamA	PF00892	176 - 313	4.1e-15	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT4G19185 AT4G19185
fragaria_vesca	FvH4_2g37290 FvH4_2g37290
malus_domestica	MD08G1001200.v1.1
prunus_persica	Prupe.1G353200_v2.0.a1 Prupe.1G353200_v2.0.a1 Prupe.1G353200_v2.0.a1 Prupe.1G353200_v2.0.a1
pyrus_communis	pycom08g00050 pycom15g00010
rosa_chinensis	RchiOBHm_Chr6g0304411
rosa_laevigata	RLG00000010981
rosa_multiflora	Rmu_co8418059.1_g000001 Rmu_ssc0000218.1_g000048
rosa_roxburghii	Rroxscaffold_7G00163760
rosa_rugosa	Rorug06G0331300
rosa_samantha	Rh6AG444200 Rh6BG458200 Rh6CG457000 Rh6DG443700
rosa_wichuraiana	Rw6G038560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	265, 844
AccB1I	GGYRCC	2 cut(s)	144, 371
AccI	GTMKAC	1 cut(s)	118
AciI	CCGC	3 cut(s)	245, 566, 983
AcoI	YGGCCR	1 cut(s)	246
AcsI	RAATTY	4 cut(s)	95, 183, 313, 503
AcuI	CTGAAG	2 cut(s)	348, 828
AcyI	GRCGYC	1 cut(s)	145
AdeI	CACNNNGTG	1 cut(s)	443
AfaI	GTAC	4 cut(s)	291, 352, 418, 1056
AflIII	ACRYGT	1 cut(s)	1057
AgsI	TTSAA	2 cut(s)	598, 833
AjnI	CCWGG	2 cut(s)	282, 498
AloI	GAACNNNNNNTCC	2 cut(s)	996, 1028
AluBI	AGCT	6 cut(s)	23, 199, 326, 721, 842, 968
AluI	AGCT	6 cut(s)	23, 199, 326, 721, 842, 968
Alw26I	GTCTC	1 cut(s)	1003
AlwNI	CAGNNNCTG	1 cut(s)	473
Ama87I	CYCGRG	1 cut(s)	993
AoxI	GGCC	7 cut(s)	3, 246, 336, 398, 756, 800, 942
ApeKI	GCWGC	4 cut(s)	20, 242, 839, 965
ApoI	RAATTY	4 cut(s)	95, 183, 313, 503
ArsI	GACNNNNNNTTYG	1 cut(s)	1061
AseI	ATTAAT	1 cut(s)	380
AspA2I	CCTAGG	1 cut(s)	868
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	5 cut(s)	4, 398, 757, 800, 942
AsuHPI	GGTGA	1 cut(s)	676
AvaI	CYCGRG	1 cut(s)	993
AvrII	CCTAGG	1 cut(s)	868
AxyI	CCTNAGG	1 cut(s)	8
BaeGI	GKGCMC	1 cut(s)	302
BaeI	ACNNNNGTAYC	2 cut(s)	342, 375
BanI	GGYRCC	2 cut(s)	144, 371
BanII	GRGCYC	1 cut(s)	878
BbvI	GCAGC	4 cut(s)	32, 229, 851, 977
BcgI	CGANNNNNNTGC	2 cut(s)	707, 741
BciT130I	CCWGG	2 cut(s)	284, 500
BclI	TGATCA	1 cut(s)	66
BcoDI	GTCTC	1 cut(s)	1003
BfaI	CTAG	3 cut(s)	512, 575, 869
BfmI	CTRYAG	2 cut(s)	45, 837
BfoI	RGCGCY	1 cut(s)	148
BfuAI	ACCTGC	2 cut(s)	265, 844
BglI	GCCNNNNNGGC	1 cut(s)	584
BglII	AGATCT	1 cut(s)	792
BisI	GCNGC	6 cut(s)	21, 243, 246, 567, 840, 966
BlnI	CCTAGG	1 cut(s)	868
BlsI	GCNGC	6 cut(s)	22, 244, 247, 568, 841, 967
BmcAI	AGTACT	1 cut(s)	291
Bme1390I	CCNGG	2 cut(s)	284, 500
BmeT110I	CYCGRG	1 cut(s)	993
BmgT120I	GGNCC	5 cut(s)	4, 398, 757, 800, 942
BmiI	GGNNCC	5 cut(s)	146, 373, 588, 801, 875
BmrFI	CCNGG	2 cut(s)	284, 500
BmsI	GCATC	2 cut(s)	761, 1012
BsaHI	GRCGYC	1 cut(s)	145
BsaI	GGTCTC	1 cut(s)	1003
BsaJI	CCNNGG	3 cut(s)	169, 394, 868
BsaWI	WCCGGW	1 cut(s)	29
Bse1I	ACTGG	2 cut(s)	184, 704
Bse21I	CCTNAGG	1 cut(s)	8
BseBI	CCWGG	2 cut(s)	284, 500
BseDI	CCNNGG	3 cut(s)	169, 394, 868
BseGI	GGATG	2 cut(s)	26, 1011
BseMII	CTCAG	1 cut(s)	334
BseNI	ACTGG	2 cut(s)	184, 704
BseRI	GAGGAG	1 cut(s)	25
BseSI	GKGCMC	1 cut(s)	302
BseXI	GCAGC	4 cut(s)	32, 229, 851, 977
BshFI	GGCC	7 cut(s)	5, 248, 338, 400, 758, 802, 944
BshNI	GGYRCC	2 cut(s)	144, 371
BsiHKCI	CYCGRG	1 cut(s)	993
BsiSI	CCGG	1 cut(s)	30
BsmAI	GTCTC	1 cut(s)	1003
BsmI	GAATGC	1 cut(s)	88
BsnI	GGCC	7 cut(s)	5, 248, 338, 400, 758, 802, 944
Bso31I	GGTCTC	1 cut(s)	1003
BsoBI	CYCGRG	1 cut(s)	993
Bsp1286I	GDGCHC	2 cut(s)	302, 878
Bsp143I	GATC	3 cut(s)	66, 514, 792
BspACI	CCGC	3 cut(s)	245, 566, 983
BspANI	GGCC	7 cut(s)	5, 248, 338, 400, 758, 802, 944
BspCNI	CTCAG	1 cut(s)	333
BspHI	TCATGA	2 cut(s)	69, 153
BspLI	GGNNCC	5 cut(s)	146, 373, 588, 801, 875
BspMAI	CTGCAG	1 cut(s)	841
BspMI	ACCTGC	2 cut(s)	265, 844
BspT107I	GGYRCC	2 cut(s)	144, 371
BspTNI	GGTCTC	1 cut(s)	1003
BsrI	ACTGG	2 cut(s)	184, 704
BssECI	CCNNGG	3 cut(s)	169, 394, 868
BssMI	GATC	3 cut(s)	66, 514, 792
BssNI	GRCGYC	1 cut(s)	145
BssT1I	CCWWGG	2 cut(s)	169, 868
Bst2UI	CCWGG	2 cut(s)	284, 500
Bst4CI	ACNGT	2 cut(s)	112, 714
Bst6I	CTCTTC	1 cut(s)	155
BstACI	GRCGYC	1 cut(s)	145
BstC8I	GCNNGC	3 cut(s)	336, 402, 804
BstDEI	CTNAG	2 cut(s)	8, 320
BstF5I	GGATG	2 cut(s)	26, 1011
BstH2I	RGCGCY	1 cut(s)	148
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	3 cut(s)	69, 517, 795
BstMAI	GTCTC	1 cut(s)	1003
BstMBI	GATC	3 cut(s)	66, 514, 792
BstMWI	GCNNNNNNNGC	4 cut(s)	575, 584, 812, 845
BstNI	CCWGG	2 cut(s)	284, 500
BstNSI	RCATGY	2 cut(s)	39, 559
BstSCI	CCNGG	2 cut(s)	282, 498
BstSFI	CTRYAG	2 cut(s)	45, 837
BstSLI	GKGCMC	1 cut(s)	302
BstV1I	GCAGC	4 cut(s)	32, 229, 851, 977
BstX2I	RGATCY	1 cut(s)	792
BstXI	CCANNNNNNTGG	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	792
Bsu36I	CCTNAGG	1 cut(s)	8
BsuRI	GGCC	7 cut(s)	5, 248, 338, 400, 758, 802, 944
BtsCI	GGATG	2 cut(s)	26, 1011
BtsI	GCAGTG	1 cut(s)	83
BtsIMutI	CAGTG	1 cut(s)	83
BveI	ACCTGC	2 cut(s)	265, 844
Cac8I	GCNNGC	3 cut(s)	336, 402, 804
CaiI	CAGNNNCTG	1 cut(s)	473
CciI	TCATGA	2 cut(s)	69, 153
CfoI	GCGC	1 cut(s)	147
Cfr13I	GGNCC	5 cut(s)	4, 398, 757, 800, 942
Csp6I	GTAC	4 cut(s)	290, 351, 417, 1055
CviAII	CATG	9 cut(s)	36, 70, 154, 295, 487, 556, 562, 658, 780
CviQI	GTAC	4 cut(s)	290, 351, 417, 1055
DdeI	CTNAG	2 cut(s)	8, 320
DinI	GGCGCC	1 cut(s)	146
DpnI	GATC	3 cut(s)	68, 516, 794
DpnII	GATC	3 cut(s)	66, 514, 792
DraIII	CACNNNGTG	1 cut(s)	443
EaeI	YGGCCR	1 cut(s)	246
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Eco130I	CCWWGG	2 cut(s)	169, 868
Eco24I	GRGCYC	1 cut(s)	878
Eco31I	GGTCTC	1 cut(s)	1003
Eco32I	GATATC	1 cut(s)	605
Eco57I	CTGAAG	2 cut(s)	348, 828
Eco81I	CCTNAGG	1 cut(s)	8
Eco88I	CYCGRG	1 cut(s)	993
EcoO109I	RGGNCCY	2 cut(s)	398, 800
EcoRII	CCWGG	2 cut(s)	282, 498
EcoRV	GATATC	1 cut(s)	605
EcoT14I	CCWWGG	2 cut(s)	169, 868
EcoT38I	GRGCYC	1 cut(s)	878
EgeI	GGCGCC	1 cut(s)	146
EheI	GGCGCC	1 cut(s)	146
ErhI	CCWWGG	2 cut(s)	169, 868
FaeI	CATG	9 cut(s)	39, 73, 157, 298, 490, 559, 565, 661, 783
FalI	AAGNNNNNCTT	2 cut(s)	592, 624
FatI	CATG	9 cut(s)	35, 69, 153, 294, 486, 555, 561, 657, 779
FbaI	TGATCA	1 cut(s)	66
FblI	GTMKAC	1 cut(s)	118
Fnu4HI	GCNGC	6 cut(s)	21, 243, 246, 567, 840, 966
FokI	GGATG	2 cut(s)	13, 998
FriOI	GRGCYC	1 cut(s)	878
Fsp4HI	GCNGC	6 cut(s)	21, 243, 246, 567, 840, 966
FspBI	CTAG	3 cut(s)	512, 575, 869
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	6 cut(s)	21, 243, 246, 567, 840, 966
HaeII	RGCGCY	1 cut(s)	148
HaeIII	GGCC	7 cut(s)	5, 248, 338, 400, 758, 802, 944
HapII	CCGG	1 cut(s)	30
HhaI	GCGC	1 cut(s)	147
Hin1I	GRCGYC	1 cut(s)	145
Hin1II	CATG	9 cut(s)	39, 73, 157, 298, 490, 559, 565, 661, 783
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HincII	GTYRAC	2 cut(s)	464, 708
HindII	GTYRAC	2 cut(s)	464, 708
HinfI	GANTC	3 cut(s)	124, 689, 771
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	1 cut(s)	676
Hpy166II	GTNNAC	6 cut(s)	119, 353, 464, 708, 908, 1057
Hpy188I	TCNGA	7 cut(s)	94, 323, 395, 530, 718, 1003, 1081
Hpy188III	TCNNGA	4 cut(s)	70, 154, 775, 858
Hpy8I	GTNNAC	6 cut(s)	119, 353, 464, 708, 908, 1057
HpyAV	CCTTC	3 cut(s)	169, 323, 618
HpyCH4III	ACNGT	2 cut(s)	112, 714
HpyCH4IV	ACGT	2 cut(s)	704, 1059
HpyF10VI	GCNNNNNNNGC	4 cut(s)	575, 584, 812, 845
HpyF3I	CTNAG	2 cut(s)	8, 320
HpySE526I	ACGT	2 cut(s)	704, 1059
Hsp92I	GRCGYC	1 cut(s)	145
Hsp92II	CATG	9 cut(s)	39, 73, 157, 298, 490, 559, 565, 661, 783
HspAI	GCGC	1 cut(s)	145
KasI	GGCGCC	1 cut(s)	144
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	3 cut(s)	66, 514, 792
LmnI	GCTCC	3 cut(s)	12, 592, 873
Lsp1109I	GCAGC	4 cut(s)	32, 229, 851, 977
LweI	GCATC	2 cut(s)	761, 1012
MaeI	CTAG	3 cut(s)	512, 575, 869
MaeII	ACGT	2 cut(s)	704, 1059
MaeIII	GTNAC	3 cut(s)	622, 664, 934
MalI	GATC	3 cut(s)	68, 516, 794
MboI	GATC	3 cut(s)	66, 514, 792
MboII	GAAGA	4 cut(s)	142, 154, 157, 200
MflI	RGATCY	1 cut(s)	792
MhlI	GDGCHC	2 cut(s)	302, 878
MluCI	AATT	9 cut(s)	40, 95, 183, 313, 503, 744, 763, 912, 1029
Mly113I	GGCGCC	1 cut(s)	145
MlyI	GAGTC	1 cut(s)	765
MmeI	TCCRAC	1 cut(s)	257
MnlI	CCTC	7 cut(s)	3, 158, 389, 452, 502, 955, 1017
MseI	TTAA	5 cut(s)	380, 542, 762, 1032, 1084
MslI	CAYNNNNRTG	5 cut(s)	358, 380, 560, 662, 1020
MspI	CCGG	1 cut(s)	30
MspR9I	CCNGG	2 cut(s)	284, 500
Mva1269I	GAATGC	1 cut(s)	88
MvaI	CCWGG	2 cut(s)	284, 500
MwoI	GCNNNNNNNGC	4 cut(s)	575, 584, 812, 845
NarI	GGCGCC	1 cut(s)	145
NdeII	GATC	3 cut(s)	66, 514, 792
NlaIII	CATG	9 cut(s)	39, 73, 157, 298, 490, 559, 565, 661, 783
NlaIV	GGNNCC	5 cut(s)	146, 373, 588, 801, 875
NmuCI	GTSAC	3 cut(s)	622, 664, 934
NspI	RCATGY	2 cut(s)	39, 559
PagI	TCATGA	2 cut(s)	69, 153
PctI	GAATGC	1 cut(s)	88
PfeI	GAWTC	2 cut(s)	124, 689
PflFI	GACNNNGTC	1 cut(s)	712
PfoI	TCCNGGA	1 cut(s)	498
PkrI	GCNGC	6 cut(s)	22, 244, 247, 568, 841, 967
PleI	GAGTC	1 cut(s)	765
PluTI	GGCGCC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	765
PshBI	ATTAAT	1 cut(s)	380
Psp6I	CCWGG	2 cut(s)	282, 498
PspGI	CCWGG	2 cut(s)	282, 498
PspN4I	GGNNCC	5 cut(s)	146, 373, 588, 801, 875
PspPI	GGNCC	5 cut(s)	4, 398, 757, 800, 942
PstI	CTGCAG	1 cut(s)	841
PstNI	CAGNNNCTG	1 cut(s)	473
PsuI	RGATCY	1 cut(s)	792
PsyI	GACNNNGTC	1 cut(s)	712
RsaI	GTAC	4 cut(s)	291, 352, 418, 1056
RsaNI	GTAC	4 cut(s)	290, 351, 417, 1055
RseI	CAYNNNNRTG	5 cut(s)	358, 380, 560, 662, 1020
SaqAI	TTAA	5 cut(s)	380, 542, 762, 1032, 1084
SatI	GCNGC	6 cut(s)	21, 243, 246, 567, 840, 966
Sau3AI	GATC	3 cut(s)	66, 514, 792
Sau96I	GGNCC	5 cut(s)	4, 398, 757, 800, 942
ScaI	AGTACT	1 cut(s)	291
SchI	GAGTC	1 cut(s)	765
ScrFI	CCNGG	2 cut(s)	284, 500
SduI	GDGCHC	2 cut(s)	302, 878
SfaNI	GCATC	2 cut(s)	761, 1012
SfcI	CTRYAG	2 cut(s)	45, 837
SfoI	GGCGCC	1 cut(s)	146
SmiMI	CAYNNNNRTG	5 cut(s)	358, 380, 560, 662, 1020
Sse9I	AATT	9 cut(s)	40, 95, 183, 313, 503, 744, 763, 912, 1029
SsiI	CCGC	3 cut(s)	245, 566, 983
SspDI	GGCGCC	1 cut(s)	144
SspMI	CTAG	3 cut(s)	512, 575, 869
StyD4I	CCNGG	2 cut(s)	282, 498
StyI	CCWWGG	2 cut(s)	169, 868
TaaI	ACNGT	2 cut(s)	112, 714
TaiI	ACGT	2 cut(s)	707, 1062
TaqI	TCGA	1 cut(s)	127
TasI	AATT	9 cut(s)	40, 95, 183, 313, 503, 744, 763, 912, 1029
TatI	WGTACW	3 cut(s)	289, 416, 1054
TauI	GCSGC	2 cut(s)	248, 569
TfiI	GAWTC	2 cut(s)	124, 689
Tru1I	TTAA	5 cut(s)	380, 542, 762, 1032, 1084
Tru9I	TTAA	5 cut(s)	380, 542, 762, 1032, 1084
TscAI	CASTG	1 cut(s)	90
TseFI	GTSAC	3 cut(s)	622, 664, 934
TseI	GCWGC	4 cut(s)	20, 242, 839, 965
Tsp45I	GTSAC	3 cut(s)	622, 664, 934
TspDTI	ATGAA	8 cut(s)	15, 86, 142, 152, 475, 624, 646, 702
TspGWI	ACGGA	1 cut(s)	136
TspRI	CASTG	1 cut(s)	90
Tth111I	GACNNNGTC	1 cut(s)	712
VspI	ATTAAT	1 cut(s)	380
XapI	RAATTY	4 cut(s)	95, 183, 313, 503
XceI	RCATGY	2 cut(s)	39, 559
XmaJI	CCTAGG	1 cut(s)	868
XmiI	GTMKAC	1 cut(s)	118
XspI	CTAG	3 cut(s)	512, 575, 869
ZrmI	AGTACT	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.