Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004660

Physical Location & Seq

Genomic Coordinates Forward (+)

5948269 .. 5953824

Gene Structure 5556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00163760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGTCAGCAGTAGTGGCCTCTGCGTCAGCAGCAGGTGTTGCAGTTGGGGGAGATGTATGGAAAGCACACGCGGCCATGGCGCTGGTTCAGCTCATCAACGGAGGCTATCATGTAATTACCAAAGTAGCCCTCAATGTGGGCATCAACCAGCTTGTCTTCTGTGTCTACAGAGACCTTCTTGCCCTGGTCATTCTTGCTCCAATCGCCTATGTCCGTGAAAAACGGGTTCGACAACCAATGAATAGGCGCCTCTTCATGACCTTCTTCTTCCTTGGGCTAACTGGAATTTTTGGCAACCAGCTTTTGTTTCTTCTTGGTCTTGGTTACACAAATCCAACTTACGCTGCGGCCATACAACCTGCTATCCCTGTTTTTACTTTTATCCTGGCAGTACTCATGGGCACAGAAAGAGTGAATTTGCTCAGAGCTGAAGGGCAGGCCAAAATTTCTGGTACACTTGTATGTGTTTCTGGTGCCATATTAATGGTCTTATTCCGAGGGCCTGCTTTGATTGGAAGTACAGAACCAGACTTCACATCACAAAGTGAGATAAGTGCCAGAGGTCAACCAGAGCCTGTTGGGTGGTTGATGTCCTCTTTCCTGGAATTTGGACTTGATCATTTCCATATCGGAGTTTTATGCTTAATAGGGAACTGCATGTGCATGGCGGCTTTCCTAGCCATTCAGGCTCCACTTTTGAAAAGATATCCTTCCAATCTGTCAGTCACAGCATATTCGTACTTATTTGGTGCTTTATTCATGGTGGTGACTGCATTATTTATGACCAATGAATCAACAGACTGGACGTTGACACAGTCCGAGCTTTTTGCAGTTATTTACGCTGGAATTATTGCATCTGCCCTTAATTATGGACTCCTGACGTGGTGCAATAAGATCTTGGGGCCTGCTTTGGTTGCTCTTTACAATCCACTTCAACCTGCAGCTTCAGCCTTTTTGTCAAGAGTTTTCCTAGGGAGCCCTATCTATTTGGGAAGTGTTGCAGGGGGTTTACTAATTATTGCTGGTCTTTATGCGGTCACTTGGGCCTCCTTTAGAGAAAGACAGGCAGCTTTGGGTGTTATACCGCCGATTGCTCGGGTCTCCGAACCTCTCATCCACAAAGATGCAACAATTAACAAGACACCATTCCACAGAGTACACGTTTTACCAAAATCATCTTCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0022857 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

395

Amino Acids

42.49

Weight (kDa)

9.12

Isoelectric Point (pI)

37.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	24 - 163	1.8e-14	EamA-like transporter family
EamA	PF00892	210 - 347	1.6e-14	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004660)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT3G45870 AT4G19185 AT4G19185
fragaria_vesca	FvH4_2g37290 FvH4_2g37290
malus_domestica	MD08G1001200.v1.1
prunus_persica	Prupe.1G353200_v2.0.a1 Prupe.1G353200_v2.0.a1 Prupe.1G353200_v2.0.a1 Prupe.1G353200_v2.0.a1
pyrus_communis	pycom08g00050 pycom15g00010
rosa_chinensis	RchiOBHm_Chr6g0304411
rosa_laevigata	RLG00000010981
rosa_multiflora	Rmu_co8418059.1_g000001 Rmu_ssc0000218.1_g000048
rosa_roxburghii	Rroxscaffold_7G00163760
rosa_rugosa	Rorug06G0331300
rosa_samantha	Rh6AG444200 Rh6BG458200 Rh6CG457000 Rh6DG443700
rosa_wichuraiana	Rw6G038560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	23
Acc36I	ACCTGC	3 cut(s)	23, 367, 946
AccB1I	GGYRCC	2 cut(s)	246, 473
AccI	GTMKAC	1 cut(s)	165
AccII	CGCG	1 cut(s)	71
AciI	CCGC	5 cut(s)	71, 347, 668, 1034, 1085
AcoI	YGGCCR	2 cut(s)	72, 348
AcsI	RAATTY	4 cut(s)	285, 415, 444, 605
AcuI	CTGAAG	3 cut(s)	450, 930, 1164
AcyI	GRCGYC	1 cut(s)	247
AdeI	CACNNNGTG	1 cut(s)	545
AfaI	GTAC	5 cut(s)	393, 454, 520, 740, 1158
AfiI	CCNNNNNNNGG	1 cut(s)	136
AflIII	ACRYGT	1 cut(s)	1159
AgsI	TTSAA	2 cut(s)	700, 935
AjiI	CACGTC	1 cut(s)	882
AjnI	CCWGG	3 cut(s)	183, 384, 600
AjuI	GAANNNNNNNTTGG	1 cut(s)	1162
AloI	GAACNNNNNNTCC	2 cut(s)	1098, 1130
AluBI	AGCT	7 cut(s)	91, 151, 301, 428, 823, 944, 1070
AluI	AGCT	7 cut(s)	91, 151, 301, 428, 823, 944, 1070
Alw26I	GTCTC	2 cut(s)	165, 1105
AlwNI	CAGNNNCTG	1 cut(s)	575
Ama87I	CYCGRG	1 cut(s)	1095
AoxI	GGCC	7 cut(s)	15, 72, 348, 438, 500, 902, 1044
ApeKI	GCWGC	4 cut(s)	29, 344, 941, 1067
ApoI	RAATTY	4 cut(s)	285, 415, 444, 605
AseI	ATTAAT	1 cut(s)	482
AspA2I	CCTAGG	1 cut(s)	970
AspLEI	GCGC	2 cut(s)	82, 249
AspS9I	GGNCC	3 cut(s)	500, 902, 1044
AsuHPI	GGTGA	1 cut(s)	778
AvaI	CYCGRG	1 cut(s)	1095
AvrII	CCTAGG	1 cut(s)	970
BaeGI	GKGCMC	1 cut(s)	404
BaeI	ACNNNNGTAYC	2 cut(s)	444, 477
BanI	GGYRCC	2 cut(s)	246, 473
BanII	GRGCYC	1 cut(s)	980
BbsI	GAAGAC	1 cut(s)	148
BbvI	GCAGC	4 cut(s)	41, 331, 953, 1079
BcgI	CGANNNNNNTGC	2 cut(s)	809, 843
BciT130I	CCWGG	3 cut(s)	185, 386, 602
BclI	TGATCA	1 cut(s)	616
BcoDI	GTCTC	2 cut(s)	165, 1105
BfaI	CTAG	2 cut(s)	677, 971
BfmI	CTRYAG	2 cut(s)	166, 939
BfoI	RGCGCY	2 cut(s)	83, 250
BfuAI	ACCTGC	3 cut(s)	23, 367, 946
BglI	GCCNNNNNGGC	1 cut(s)	686
BglII	AGATCT	1 cut(s)	894
BisI	GCNGC	7 cut(s)	30, 72, 345, 348, 669, 942, 1068
BlnI	CCTAGG	1 cut(s)	970
BlsI	GCNGC	7 cut(s)	31, 73, 346, 349, 670, 943, 1069
BmcAI	AGTACT	1 cut(s)	393
Bme1390I	CCNGG	3 cut(s)	185, 386, 602
BmeT110I	CYCGRG	1 cut(s)	1095
BmgBI	CACGTC	1 cut(s)	882
BmgT120I	GGNCC	3 cut(s)	500, 902, 1044
BmiI	GGNNCC	5 cut(s)	248, 475, 690, 903, 977
BmrFI	CCNGG	3 cut(s)	185, 386, 602
BmsI	GCATC	3 cut(s)	150, 863, 1114
BpiI	GAAGAC	1 cut(s)	148
BsaHI	GRCGYC	1 cut(s)	247
BsaI	GGTCTC	2 cut(s)	165, 1105
BsaJI	CCNNGG	5 cut(s)	75, 183, 271, 496, 970
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse1I	ACTGG	2 cut(s)	286, 806
BseBI	CCWGG	3 cut(s)	185, 386, 602
BseDI	CCNNGG	5 cut(s)	75, 183, 271, 496, 970
BseGI	GGATG	1 cut(s)	1113
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMII	CTCAG	1 cut(s)	436
BseNI	ACTGG	2 cut(s)	286, 806
BseSI	GKGCMC	1 cut(s)	404
BseXI	GCAGC	4 cut(s)	41, 331, 953, 1079
Bsh1236I	CGCG	1 cut(s)	71
BshFI	GGCC	7 cut(s)	17, 74, 350, 440, 502, 904, 1046
BshNI	GGYRCC	2 cut(s)	246, 473
BsiHKCI	CYCGRG	1 cut(s)	1095
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmAI	GTCTC	2 cut(s)	165, 1105
BsnI	GGCC	7 cut(s)	17, 74, 350, 440, 502, 904, 1046
Bso31I	GGTCTC	2 cut(s)	165, 1105
BsoBI	CYCGRG	1 cut(s)	1095
Bsp1286I	GDGCHC	2 cut(s)	404, 980
Bsp143I	GATC	2 cut(s)	616, 894
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	5 cut(s)	71, 347, 668, 1034, 1085
BspANI	GGCC	7 cut(s)	17, 74, 350, 440, 502, 904, 1046
BspCNI	CTCAG	1 cut(s)	435
BspFNI	CGCG	1 cut(s)	71
BspHI	TCATGA	1 cut(s)	255
BspLI	GGNNCC	5 cut(s)	248, 475, 690, 903, 977
BspMAI	CTGCAG	1 cut(s)	943
BspMI	ACCTGC	3 cut(s)	23, 367, 946
BspT107I	GGYRCC	2 cut(s)	246, 473
BspTNI	GGTCTC	2 cut(s)	165, 1105
BsrI	ACTGG	2 cut(s)	286, 806
BssECI	CCNNGG	5 cut(s)	75, 183, 271, 496, 970
BssMI	GATC	2 cut(s)	616, 894
BssNI	GRCGYC	1 cut(s)	247
BssT1I	CCWWGG	3 cut(s)	75, 271, 970
Bst2UI	CCWGG	3 cut(s)	185, 386, 602
Bst4CI	ACNGT	1 cut(s)	816
Bst6I	CTCTTC	1 cut(s)	257
BstACI	GRCGYC	1 cut(s)	247
BstAPI	GCANNNNNTGC	1 cut(s)	38
BstC8I	GCNNGC	3 cut(s)	438, 504, 906
BstDEI	CTNAG	1 cut(s)	422
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	1 cut(s)	1113
BstFNI	CGCG	1 cut(s)	71
BstH2I	RGCGCY	2 cut(s)	83, 250
BstHHI	GCGC	2 cut(s)	82, 249
BstKTI	GATC	2 cut(s)	619, 897
BstMAI	GTCTC	2 cut(s)	165, 1105
BstMBI	GATC	2 cut(s)	616, 894
BstNI	CCWGG	3 cut(s)	185, 386, 602
BstNSI	RCATGY	1 cut(s)	661
BstSCI	CCNGG	3 cut(s)	183, 384, 600
BstSFI	CTRYAG	2 cut(s)	166, 939
BstSLI	GKGCMC	1 cut(s)	404
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	4 cut(s)	41, 331, 953, 1079
BstV2I	GAAGAC	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	894
BstXI	CCANNNNNNTGG	2 cut(s)	82, 484
BstYI	RGATCY	1 cut(s)	894
BsuRI	GGCC	7 cut(s)	17, 74, 350, 440, 502, 904, 1046
BtgI	CCRYGG	1 cut(s)	75
BtrI	CACGTC	1 cut(s)	882
BtsCI	GGATG	1 cut(s)	1113
BveI	ACCTGC	3 cut(s)	23, 367, 946
Cac8I	GCNNGC	3 cut(s)	438, 504, 906
CaiI	CAGNNNCTG	1 cut(s)	575
CciI	TCATGA	1 cut(s)	255
CfoI	GCGC	2 cut(s)	82, 249
Cfr13I	GGNCC	3 cut(s)	500, 902, 1044
CseI	GACGC	1 cut(s)	12
Csp6I	GTAC	5 cut(s)	392, 453, 519, 739, 1157
CviAII	CATG	7 cut(s)	76, 110, 256, 397, 658, 664, 760
CviQI	GTAC	5 cut(s)	392, 453, 519, 739, 1157
DdeI	CTNAG	1 cut(s)	422
DinI	GGCGCC	1 cut(s)	248
DpnI	GATC	2 cut(s)	618, 896
DpnII	GATC	2 cut(s)	616, 894
DraIII	CACNNNGTG	1 cut(s)	545
EaeI	YGGCCR	2 cut(s)	72, 348
Eam1104I	CTCTTC	1 cut(s)	257
EarI	CTCTTC	1 cut(s)	257
Eco130I	CCWWGG	3 cut(s)	75, 271, 970
Eco24I	GRGCYC	1 cut(s)	980
Eco31I	GGTCTC	2 cut(s)	165, 1105
Eco32I	GATATC	1 cut(s)	707
Eco57I	CTGAAG	3 cut(s)	450, 930, 1164
Eco88I	CYCGRG	1 cut(s)	1095
EcoO109I	RGGNCCY	2 cut(s)	500, 902
EcoRII	CCWGG	3 cut(s)	183, 384, 600
EcoRV	GATATC	1 cut(s)	707
EcoT14I	CCWWGG	3 cut(s)	75, 271, 970
EcoT38I	GRGCYC	1 cut(s)	980
EgeI	GGCGCC	1 cut(s)	248
EheI	GGCGCC	1 cut(s)	248
ErhI	CCWWGG	3 cut(s)	75, 271, 970
FaeI	CATG	7 cut(s)	79, 113, 259, 400, 661, 667, 763
FalI	AAGNNNNNCTT	2 cut(s)	694, 726
FatI	CATG	7 cut(s)	75, 109, 255, 396, 657, 663, 759
FbaI	TGATCA	1 cut(s)	616
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	7 cut(s)	30, 72, 345, 348, 669, 942, 1068
FokI	GGATG	1 cut(s)	1100
FriOI	GRGCYC	1 cut(s)	980
Fsp4HI	GCNGC	7 cut(s)	30, 72, 345, 348, 669, 942, 1068
FspBI	CTAG	2 cut(s)	677, 971
GlaI	GCGC	2 cut(s)	81, 248
GluI	GCNGC	7 cut(s)	30, 72, 345, 348, 669, 942, 1068
HaeII	RGCGCY	2 cut(s)	83, 250
HaeIII	GGCC	7 cut(s)	17, 74, 350, 440, 502, 904, 1046
HgaI	GACGC	1 cut(s)	12
HhaI	GCGC	2 cut(s)	82, 249
Hin1I	GRCGYC	1 cut(s)	247
Hin1II	CATG	7 cut(s)	79, 113, 259, 400, 661, 667, 763
Hin6I	GCGC	2 cut(s)	80, 247
HinP1I	GCGC	2 cut(s)	80, 247
HincII	GTYRAC	2 cut(s)	566, 810
HindII	GTYRAC	2 cut(s)	566, 810
HinfI	GANTC	2 cut(s)	791, 873
HphI	GGTGA	1 cut(s)	778
Hpy166II	GTNNAC	6 cut(s)	166, 455, 566, 810, 1010, 1159
Hpy188I	TCNGA	6 cut(s)	425, 497, 632, 820, 1105, 1183
Hpy188III	TCNNGA	3 cut(s)	256, 877, 960
Hpy8I	GTNNAC	6 cut(s)	166, 455, 566, 810, 1010, 1159
HpyAV	CCTTC	4 cut(s)	185, 271, 425, 720
HpyCH4III	ACNGT	1 cut(s)	816
HpyCH4IV	ACGT	3 cut(s)	806, 881, 1161
HpyF3I	CTNAG	1 cut(s)	422
HpySE526I	ACGT	3 cut(s)	806, 881, 1161
Hsp92I	GRCGYC	1 cut(s)	247
Hsp92II	CATG	7 cut(s)	79, 113, 259, 400, 661, 667, 763
HspAI	GCGC	2 cut(s)	80, 247
KasI	GGCGCC	1 cut(s)	246
Ksp22I	TGATCA	1 cut(s)	616
Kzo9I	GATC	2 cut(s)	616, 894
LmnI	GCTCC	3 cut(s)	202, 694, 975
Lsp1109I	GCAGC	4 cut(s)	41, 331, 953, 1079
LweI	GCATC	3 cut(s)	150, 863, 1114
MaeI	CTAG	2 cut(s)	677, 971
MaeII	ACGT	3 cut(s)	806, 881, 1161
MaeIII	GTNAC	4 cut(s)	323, 724, 766, 1036
MalI	GATC	2 cut(s)	618, 896
MboI	GATC	2 cut(s)	616, 894
MboII	GAAGA	6 cut(s)	148, 244, 256, 259, 302, 1170
MflI	RGATCY	1 cut(s)	894
MhlI	GDGCHC	2 cut(s)	404, 980
MluCI	AATT	9 cut(s)	114, 285, 415, 444, 605, 846, 865, 1014, 1131
Mly113I	GGCGCC	1 cut(s)	247
MlyI	GAGTC	1 cut(s)	867
MmeI	TCCRAC	1 cut(s)	359
MnlI	CCTC	9 cut(s)	28, 95, 140, 260, 491, 554, 604, 1057, 1119
MseI	TTAA	5 cut(s)	482, 644, 864, 1134, 1186
MslI	CAYNNNNRTG	5 cut(s)	460, 482, 662, 764, 1122
MspR9I	CCNGG	3 cut(s)	185, 386, 602
MvaI	CCWGG	3 cut(s)	185, 386, 602
MvnI	CGCG	1 cut(s)	71
NarI	GGCGCC	1 cut(s)	247
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	2 cut(s)	616, 894
NlaIII	CATG	7 cut(s)	79, 113, 259, 400, 661, 667, 763
NlaIV	GGNNCC	5 cut(s)	248, 475, 690, 903, 977
NmuCI	GTSAC	3 cut(s)	724, 766, 1036
NspI	RCATGY	1 cut(s)	661
PagI	TCATGA	1 cut(s)	255
PaqCI	CACCTGC	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	791
PflFI	GACNNNGTC	1 cut(s)	814
PfoI	TCCNGGA	1 cut(s)	600
PkrI	GCNGC	7 cut(s)	31, 73, 346, 349, 670, 943, 1069
PleI	GAGTC	1 cut(s)	867
PluTI	GGCGCC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	867
PshBI	ATTAAT	1 cut(s)	482
Psp6I	CCWGG	3 cut(s)	183, 384, 600
PspGI	CCWGG	3 cut(s)	183, 384, 600
PspN4I	GGNNCC	5 cut(s)	248, 475, 690, 903, 977
PspPI	GGNCC	3 cut(s)	500, 902, 1044
PstI	CTGCAG	1 cut(s)	943
PstNI	CAGNNNCTG	1 cut(s)	575
PsuI	RGATCY	1 cut(s)	894
PsyI	GACNNNGTC	1 cut(s)	814
RsaI	GTAC	5 cut(s)	393, 454, 520, 740, 1158
RsaNI	GTAC	5 cut(s)	392, 453, 519, 739, 1157
RseI	CAYNNNNRTG	5 cut(s)	460, 482, 662, 764, 1122
SaqAI	TTAA	5 cut(s)	482, 644, 864, 1134, 1186
SatI	GCNGC	7 cut(s)	30, 72, 345, 348, 669, 942, 1068
Sau3AI	GATC	2 cut(s)	616, 894
Sau96I	GGNCC	3 cut(s)	500, 902, 1044
ScaI	AGTACT	1 cut(s)	393
SchI	GAGTC	1 cut(s)	867
ScrFI	CCNGG	3 cut(s)	185, 386, 602
SduI	GDGCHC	2 cut(s)	404, 980
SfaNI	GCATC	3 cut(s)	150, 863, 1114
SfcI	CTRYAG	2 cut(s)	166, 939
SfoI	GGCGCC	1 cut(s)	248
SmiMI	CAYNNNNRTG	5 cut(s)	460, 482, 662, 764, 1122
Sse9I	AATT	9 cut(s)	114, 285, 415, 444, 605, 846, 865, 1014, 1131
SsiI	CCGC	5 cut(s)	71, 347, 668, 1034, 1085
SspDI	GGCGCC	1 cut(s)	246
SspMI	CTAG	2 cut(s)	677, 971
StyD4I	CCNGG	3 cut(s)	183, 384, 600
StyI	CCWWGG	3 cut(s)	75, 271, 970
TaaI	ACNGT	1 cut(s)	816
TaiI	ACGT	3 cut(s)	809, 884, 1164
TaqI	TCGA	1 cut(s)	229
TasI	AATT	9 cut(s)	114, 285, 415, 444, 605, 846, 865, 1014, 1131
TatI	WGTACW	3 cut(s)	391, 518, 1156
TauI	GCSGC	3 cut(s)	74, 350, 671
TfiI	GAWTC	1 cut(s)	791
Tru1I	TTAA	5 cut(s)	482, 644, 864, 1134, 1186
Tru9I	TTAA	5 cut(s)	482, 644, 864, 1134, 1186
TseFI	GTSAC	3 cut(s)	724, 766, 1036
TseI	GCWGC	4 cut(s)	29, 344, 941, 1067
Tsp45I	GTSAC	3 cut(s)	724, 766, 1036
TspDTI	ATGAA	4 cut(s)	244, 254, 748, 804
TspGWI	ACGGA	2 cut(s)	114, 203
Tth111I	GACNNNGTC	1 cut(s)	814
VspI	ATTAAT	1 cut(s)	482
XapI	RAATTY	4 cut(s)	285, 415, 444, 605
XceI	RCATGY	1 cut(s)	661
XmaJI	CCTAGG	1 cut(s)	970
XmiI	GTMKAC	1 cut(s)	165
XspI	CTAG	2 cut(s)	677, 971
ZrmI	AGTACT	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.