AT3G46020

RNA-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0008329
Physical Location & Seq
Reverse (-)
16912285 .. 16913350
1066 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G46020.1

Sequence Viewer

Length: 309 bp
ATGGCTAAGAGAATCTCAGCTCAACTCTTCGTAAGCAGGTTATCTGCTTATACCACAGATCAATCTCTGAGGCAATTGTTCTCTCCTTTTGGTCAAATCAAAGAAGCTCGGCTTATTAGAGATTCAGAAACACAGAGACCTAAAGGATTCGGCTTTATCACCTTCGATTCTGAAGATGATGCACGAAAGGCATTGAAAAGCTTAGATGGGAAGATTGTAGATGGTAGACTAATATTTGTTGAAGTAGCCAAGAACGCAGAGGAAGTGAGAGCGGGTATTAACAGTAATAAAGCCGAGGACCGCGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006417 GO:0006996 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010494 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016043 GO:0017148 GO:0019219 GO:0019222 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032991 GO:0034063 GO:0034248 GO:0034249 GO:0034250 GO:0034622 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043487 GO:0043488 GO:0043489 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045182 GO:0045727 GO:0045934 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070181 GO:0070925 GO:0071826 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

102

Amino Acids

11.42

Weight (kDa)

9.45

Isoelectric Point (pI)

41.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 9 - 78 1.3e-25 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 27
AccBSI CCGCTC 1 cut(s) 272
AccI GTMKAC 1 cut(s) 226
AccII CGCG 1 cut(s) 303
AciI CCGC 3 cut(s) 272, 301, 303
AcuI CTGAAG 1 cut(s) 192
AgsI TTSAA 2 cut(s) 196, 242
AluBI AGCT 3 cut(s) 20, 107, 201
AluI AGCT 3 cut(s) 20, 107, 201
Alw26I GTCTC 1 cut(s) 130
AspS9I GGNCC 1 cut(s) 298
AsuHPI GGTGA 1 cut(s) 151
AvaII GGWCC 1 cut(s) 298
BccI CCATC 2 cut(s) 200, 215
BcoDI GTCTC 1 cut(s) 130
BfuAI ACCTGC 1 cut(s) 27
Bme18I GGWCC 1 cut(s) 298
BmgT120I GGNCC 1 cut(s) 298
BmsI GCATC 1 cut(s) 169
BsaI GGTCTC 1 cut(s) 130
BsaJI CCNNGG 2 cut(s) 294, 301
BseDI CCNNGG 2 cut(s) 294, 301
BseMII CTCAG 2 cut(s) 30, 59
Bsh1236I CGCG 1 cut(s) 303
BsmAI GTCTC 1 cut(s) 130
Bso31I GGTCTC 1 cut(s) 130
Bsp143I GATC 1 cut(s) 58
BspACI CCGC 3 cut(s) 272, 301, 303
BspCNI CTCAG 2 cut(s) 29, 60
BspFNI CGCG 1 cut(s) 303
BspMI ACCTGC 1 cut(s) 27
BspTNI GGTCTC 1 cut(s) 130
BsrBI CCGCTC 1 cut(s) 272
BssECI CCNNGG 2 cut(s) 294, 301
BssMI GATC 1 cut(s) 58
Bst4CI ACNGT 1 cut(s) 284
Bst6I CTCTTC 1 cut(s) 32
BstDEI CTNAG 4 cut(s) 6, 16, 68, 202
BstDSI CCRYGG 1 cut(s) 301
BstFNI CGCG 1 cut(s) 303
BstKTI GATC 1 cut(s) 61
BstMAI GTCTC 1 cut(s) 130
BstMBI GATC 1 cut(s) 58
BstMWI GCNNNNNNNGC 2 cut(s) 188, 254
BstUI CGCG 1 cut(s) 303
BtgI CCRYGG 1 cut(s) 301
BveI ACCTGC 1 cut(s) 27
Cfr13I GGNCC 1 cut(s) 298
Cfr42I CCGCGG 1 cut(s) 304
CviJI RGCY 8 cut(s) 5, 20, 107, 112, 153, 201, 248, 293
CviKI_1 RGCY 8 cut(s) 5, 20, 107, 112, 153, 201, 248, 293
DdeI CTNAG 4 cut(s) 6, 16, 68, 202
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco31I GGTCTC 1 cut(s) 130
Eco47I GGWCC 1 cut(s) 298
Eco57I CTGAAG 1 cut(s) 192
FaiI YATR 1 cut(s) 51
FalI AAGNNNNNCTT 2 cut(s) 96, 128
FauI CCCGC 2 cut(s) 265, 296
FblI GTMKAC 1 cut(s) 226
HindIII AAGCTT 1 cut(s) 199
HinfI GANTC 4 cut(s) 12, 122, 147, 167
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 1 cut(s) 227
Hpy188I TCNGA 3 cut(s) 69, 127, 172
Hpy8I GTNNAC 1 cut(s) 227
HpyAV CCTTC 1 cut(s) 172
HpyCH4III ACNGT 1 cut(s) 284
HpyCH4V TGCA 1 cut(s) 182
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 254
HpyF3I CTNAG 4 cut(s) 6, 16, 68, 202
KspI CCGCGG 1 cut(s) 304
Kzo9I GATC 1 cut(s) 58
LpnPI CCDG 1 cut(s) 22
LweI GCATC 1 cut(s) 169
MalI GATC 1 cut(s) 60
MbiI CCGCTC 1 cut(s) 272
MboI GATC 1 cut(s) 58
MboII GAAGA 3 cut(s) 19, 185, 223
MfeI CAATTG 1 cut(s) 74
MluCI AATT 1 cut(s) 74
MnlI CCTC 3 cut(s) 63, 253, 289
MseI TTAA 1 cut(s) 279
MspA1I CMGCKG 1 cut(s) 303
MunI CAATTG 1 cut(s) 74
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 2 cut(s) 188, 254
NdeII GATC 1 cut(s) 58
NmeAIII GCCGAG 1 cut(s) 88
PfeI GAWTC 4 cut(s) 12, 122, 147, 167
PspPI GGNCC 1 cut(s) 298
SacII CCGCGG 1 cut(s) 304
SaqAI TTAA 1 cut(s) 279
Sau3AI GATC 1 cut(s) 58
Sau96I GGNCC 1 cut(s) 298
SetI ASST 6 cut(s) 22, 41, 109, 142, 164, 203
SfaNI GCATC 1 cut(s) 169
Sfr303I CCGCGG 1 cut(s) 304
SgeI CNNG 5 cut(s) 49, 120, 195, 262, 285
SgrBI CCGCGG 1 cut(s) 304
SinI GGWCC 1 cut(s) 298
Sse9I AATT 1 cut(s) 74
SsiI CCGC 3 cut(s) 272, 301, 303
SspI AATATT 1 cut(s) 234
TaaI ACNGT 1 cut(s) 284
TaqI TCGA 1 cut(s) 165
TasI AATT 1 cut(s) 74
TfiI GAWTC 4 cut(s) 12, 122, 147, 167
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
VpaK11BI GGWCC 1 cut(s) 298
XmiI GTMKAC 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.