RchiOBHm_Chr5g0063171

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0008329
Physical Location & Seq
Forward (+)
68899915 .. 68903076
3162 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33930

Sequence Viewer

Length: 285 bp
ATGGCTAAAAGATTAAGCTCGAAGCTCTTCGTCAGCAGATTATCATCATACACCACTAATGAAGGACTCAGGCAGATGTTTTCACCTTTTGGAGATGTTACAGAAGCTAGGTTAGTTATAGATCGTGAAACTCAAAGGCCAAAAGGTTTTGGTTTTGTGACATACAAGTCTGTGGTTGAGGCACAGAAGGCTTTGAAGGTCATGGATGGCAGGATGGTTAATGGGAGGCTACTTTTTGTTGAAGTTGCAGAGACTGAAAGGCATTCAGAGGAAATCAGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006417 GO:0006996 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010494 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016043 GO:0017148 GO:0019219 GO:0019222 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032991 GO:0034063 GO:0034248 GO:0034249 GO:0034250 GO:0034622 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043487 GO:0043488 GO:0043489 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045182 GO:0045727 GO:0045934 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070181 GO:0070925 GO:0071826 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

94

Amino Acids

10.68

Weight (kDa)

9.52

Isoelectric Point (pI)

38.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 9 - 77 5.5e-23 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 166
AgsI TTSAA 2 cut(s) 196, 242
AluBI AGCT 4 cut(s) 18, 25, 107, 279
AluI AGCT 4 cut(s) 18, 25, 107, 279
Alw26I GTCTC 1 cut(s) 245
AlwNI CAGNNNCTG 1 cut(s) 254
AoxI GGCC 1 cut(s) 137
Asp700I GAANNNNTTC 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 75
BccI CCATC 2 cut(s) 200, 208
BcoDI GTCTC 1 cut(s) 245
BfaI CTAG 1 cut(s) 108
BsaBI GATNNNNATC 1 cut(s) 43
Bse8I GATNNNNATC 1 cut(s) 43
BseGI GGATG 2 cut(s) 211, 219
BseJI GATNNNNATC 1 cut(s) 43
BseMII CTCAG 1 cut(s) 82
BshFI GGCC 1 cut(s) 139
BsmAI GTCTC 1 cut(s) 245
BsmI GAATGC 1 cut(s) 262
BsnI GGCC 1 cut(s) 139
Bsp143I GATC 1 cut(s) 121
BspANI GGCC 1 cut(s) 139
BspCNI CTCAG 1 cut(s) 81
BspQI GCTCTTC 1 cut(s) 32
BssMI GATC 1 cut(s) 121
Bst6I CTCTTC 1 cut(s) 32
BstDEI CTNAG 1 cut(s) 68
BstF5I GGATG 2 cut(s) 211, 219
BstKTI GATC 1 cut(s) 124
BstMAI GTCTC 1 cut(s) 245
BstMBI GATC 1 cut(s) 121
BstMWI GCNNNNNNNGC 1 cut(s) 188
BsuRI GGCC 1 cut(s) 139
BtsCI GGATG 2 cut(s) 211, 219
CaiI CAGNNNCTG 1 cut(s) 254
CviAII CATG 1 cut(s) 202
CviJI RGCY 8 cut(s) 5, 18, 25, 107, 139, 191, 229, 279
CviKI_1 RGCY 8 cut(s) 5, 18, 25, 107, 139, 191, 229, 279
DdeI CTNAG 1 cut(s) 68
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
DrdI GACNNNNNNGTC 1 cut(s) 166
DseDI GACNNNNNNGTC 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
FaeI CATG 1 cut(s) 205
FaiI YATR 4 cut(s) 49, 119, 163, 203
FatI CATG 1 cut(s) 201
FokI GGATG 2 cut(s) 218, 226
FspBI CTAG 1 cut(s) 108
HaeIII GGCC 1 cut(s) 139
Hin1II CATG 1 cut(s) 205
HinfI GANTC 1 cut(s) 66
HphI GGTGA 1 cut(s) 75
Hpy188I TCNGA 1 cut(s) 268
Hpy188III TCNNGA 2 cut(s) 125, 282
HpyAV CCTTC 3 cut(s) 56, 181, 190
HpyCH4V TGCA 1 cut(s) 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
HpyF3I CTNAG 1 cut(s) 68
Hsp92II CATG 1 cut(s) 205
Kzo9I GATC 1 cut(s) 121
LguI GCTCTTC 1 cut(s) 32
LpnPI CCDG 2 cut(s) 55, 196
MaeI CTAG 1 cut(s) 108
MaeIII GTNAC 2 cut(s) 97, 157
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MboII GAAGA 1 cut(s) 19
MlyI GAGTC 1 cut(s) 60
MnlI CCTC 3 cut(s) 172, 219, 262
MroXI GAANNNNTTC 1 cut(s) 26
MseI TTAA 2 cut(s) 14, 219
Mva1269I GAATGC 1 cut(s) 262
MwoI GCNNNNNNNGC 1 cut(s) 188
NdeII GATC 1 cut(s) 121
NlaIII CATG 1 cut(s) 205
NmuCI GTSAC 1 cut(s) 157
PciSI GCTCTTC 1 cut(s) 32
PctI GAATGC 1 cut(s) 262
PdmI GAANNNNTTC 1 cut(s) 26
PleI GAGTC 1 cut(s) 60
PpsI GAGTC 1 cut(s) 60
PstNI CAGNNNCTG 1 cut(s) 254
SapI GCTCTTC 1 cut(s) 32
SaqAI TTAA 2 cut(s) 14, 219
Sau3AI GATC 1 cut(s) 121
SchI GAGTC 1 cut(s) 60
SetI ASST 8 cut(s) 20, 27, 88, 109, 113, 148, 201, 281
SgeI CNNG 7 cut(s) 31, 82, 120, 137, 178, 214, 223
SspMI CTAG 1 cut(s) 108
TaqI TCGA 1 cut(s) 20
Tru1I TTAA 2 cut(s) 14, 219
Tru9I TTAA 2 cut(s) 14, 219
TseFI GTSAC 1 cut(s) 157
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 1 cut(s) 75
XmnI GAANNNNTTC 1 cut(s) 26
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.