FvH4_3g35150

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0008329
Physical Location & Seq
Forward (+)
30335024 .. 30336232
1209 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g35150.t1

Sequence Viewer

Length: 276 bp
ATGGCTAAAAGATTAGGGTCGACGCTCTTCGTTAGCAGATTATCATCATTCACCAGCAAGGAAAAACTCAGGCAGATGTTTTCACCTTTTGGAGATGTTACAGAAGCTAGGTTAGTGATAGACCCTAACACCCAAAGGCCTAAAGGTTTTGGTTTTGTGACATACAAGTCTGAGGTTGAGGCACAGAAGGCTATCAAGGTCATGGATGGCAGGATGGTTGATGGGAGGCTGCTTTTTGTTGAAGTTGCACATCCTGAGGATACAAGCTCTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006417 GO:0006996 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010494 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016043 GO:0017148 GO:0019219 GO:0019222 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032991 GO:0034063 GO:0034248 GO:0034249 GO:0034250 GO:0034622 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043487 GO:0043488 GO:0043489 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045182 GO:0045727 GO:0045934 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070181 GO:0070925 GO:0071826 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

92

Amino Acids

10.21

Weight (kDa)

9.52

Isoelectric Point (pI)

30.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 9 - 77 3.5e-23 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 166
AccI GTMKAC 1 cut(s) 20
AgsI TTSAA 1 cut(s) 242
AluBI AGCT 2 cut(s) 107, 267
AluI AGCT 2 cut(s) 107, 267
AoxI GGCC 1 cut(s) 137
ApeKI GCWGC 1 cut(s) 229
AsuHPI GGTGA 2 cut(s) 43, 75
AxyI CCTNAGG 1 cut(s) 255
BbvI GCAGC 1 cut(s) 216
BccI CCATC 3 cut(s) 200, 208, 215
BciVI GTATCC 1 cut(s) 253
BfaI CTAG 1 cut(s) 108
BfmI CTRYAG 1 cut(s) 272
BfuI GTATCC 1 cut(s) 253
BisI GCNGC 1 cut(s) 230
BlsI GCNGC 1 cut(s) 231
BsaBI GATNNNNATC 1 cut(s) 43
Bse21I CCTNAGG 1 cut(s) 255
Bse8I GATNNNNATC 1 cut(s) 43
BseGI GGATG 3 cut(s) 211, 219, 250
BseJI GATNNNNATC 1 cut(s) 43
BseMII CTCAG 3 cut(s) 82, 162, 246
BseXI GCAGC 1 cut(s) 216
BshFI GGCC 1 cut(s) 139
BsnI GGCC 1 cut(s) 139
BspANI GGCC 1 cut(s) 139
BspCNI CTCAG 3 cut(s) 81, 163, 247
BspQI GCTCTTC 1 cut(s) 32
Bst6I CTCTTC 1 cut(s) 32
BstDEI CTNAG 3 cut(s) 68, 171, 255
BstF5I GGATG 3 cut(s) 211, 219, 250
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstSFI CTRYAG 1 cut(s) 272
BstV1I GCAGC 1 cut(s) 216
Bsu36I CCTNAGG 1 cut(s) 255
BsuI GTATCC 1 cut(s) 253
BsuRI GGCC 1 cut(s) 139
BtsCI GGATG 3 cut(s) 211, 219, 250
CseI GACGC 1 cut(s) 31
CviAII CATG 1 cut(s) 202
CviJI RGCY 6 cut(s) 5, 107, 139, 191, 229, 267
CviKI_1 RGCY 6 cut(s) 5, 107, 139, 191, 229, 267
DdeI CTNAG 3 cut(s) 68, 171, 255
DrdI GACNNNNNNGTC 1 cut(s) 166
DseDI GACNNNNNNGTC 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco147I AGGCCT 1 cut(s) 139
Eco81I CCTNAGG 1 cut(s) 255
FaeI CATG 1 cut(s) 205
FaiI YATR 3 cut(s) 163, 203, 274
FatI CATG 1 cut(s) 201
FblI GTMKAC 1 cut(s) 20
Fnu4HI GCNGC 1 cut(s) 230
FokI GGATG 3 cut(s) 218, 226, 237
Fsp4HI GCNGC 1 cut(s) 230
FspBI CTAG 1 cut(s) 108
GluI GCNGC 1 cut(s) 230
HaeIII GGCC 1 cut(s) 139
HgaI GACGC 1 cut(s) 31
Hin1II CATG 1 cut(s) 205
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HphI GGTGA 2 cut(s) 43, 75
Hpy166II GTNNAC 1 cut(s) 21
Hpy188I TCNGA 1 cut(s) 172
Hpy188III TCNNGA 1 cut(s) 254
Hpy8I GTNNAC 1 cut(s) 21
Hpy99I CGWCG 1 cut(s) 25
HpyAV CCTTC 1 cut(s) 181
HpyCH4V TGCA 1 cut(s) 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
HpyF3I CTNAG 3 cut(s) 68, 171, 255
Hsp92II CATG 1 cut(s) 205
LguI GCTCTTC 1 cut(s) 32
LpnPI CCDG 4 cut(s) 55, 67, 196, 267
Lsp1109I GCAGC 1 cut(s) 216
MaeI CTAG 1 cut(s) 108
MaeIII GTNAC 2 cut(s) 97, 157
MboII GAAGA 1 cut(s) 19
MnlI CCTC 4 cut(s) 166, 172, 219, 250
MwoI GCNNNNNNNGC 1 cut(s) 188
NlaIII CATG 1 cut(s) 205
NmuCI GTSAC 1 cut(s) 157
PceI AGGCCT 1 cut(s) 139
PciSI GCTCTTC 1 cut(s) 32
PkrI GCNGC 1 cut(s) 231
SalI GTCGAC 1 cut(s) 19
SapI GCTCTTC 1 cut(s) 32
SatI GCNGC 1 cut(s) 230
SetI ASST 7 cut(s) 88, 109, 113, 148, 177, 201, 269
SfcI CTRYAG 1 cut(s) 272
SgeI CNNG 9 cut(s) 66, 70, 82, 120, 178, 208, 214, 223, 266
SseBI AGGCCT 1 cut(s) 139
SspMI CTAG 1 cut(s) 108
StuI AGGCCT 1 cut(s) 139
TaqI TCGA 1 cut(s) 20
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 1 cut(s) 229
Tsp45I GTSAC 1 cut(s) 157
XmiI GTMKAC 1 cut(s) 20
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.