MD03G1098400.v1.1

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0008329
Physical Location & Seq
Reverse (-)
8430305 .. 8431368
1064 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1098400.v1.1.491

Sequence Viewer

Length: 285 bp
ATGGCCAAAAGATTAGGCTCGCAGCTCTTCGTCAGCAGGTTATCATCGTTCACTTCCAGTGAACAGCTCAGGAAATTGTTCTCTCCTTTTGGAAATGTTACAGAAGCTAGGTTAATTATGGATCGTCGAACTGATAGACCAAAAGGTTTTGGTTTTGTTACTTACCAGTCAGATGTTGAGGCACAAAAAGCTTTGAAGGCAATGGATGGCAGGATGGTTGACGGGAGGCTGATTTTTGTTGAAGTTGCCCAGACTGGAAGGCATGAAAACGATACCTATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006417 GO:0006996 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010494 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016043 GO:0017148 GO:0019219 GO:0019222 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032991 GO:0034063 GO:0034248 GO:0034249 GO:0034250 GO:0034622 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043487 GO:0043488 GO:0043489 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045182 GO:0045727 GO:0045934 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070181 GO:0070925 GO:0071826 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

95

Amino Acids

10.68

Weight (kDa)

9.86

Isoelectric Point (pI)

41.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 9 - 78 4.1e-22 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 27
AclWI GGATC 1 cut(s) 129
AcoI YGGCCR 1 cut(s) 3
AgsI TTSAA 2 cut(s) 196, 242
AluBI AGCT 4 cut(s) 25, 67, 107, 191
AluI AGCT 4 cut(s) 25, 67, 107, 191
AlwI GGATC 1 cut(s) 129
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 22
Asp700I GAANNNNTTC 1 cut(s) 77
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 34
BccI CCATC 2 cut(s) 200, 208
BfaI CTAG 1 cut(s) 108
BfuAI ACCTGC 1 cut(s) 27
BisI GCNGC 1 cut(s) 23
BlsI GCNGC 1 cut(s) 24
Bpu10I CCTNAGC 1 cut(s) 68
Bse1I ACTGG 3 cut(s) 57, 166, 259
Bse3DI GCAATG 1 cut(s) 207
BseGI GGATG 2 cut(s) 211, 219
BseMI GCAATG 1 cut(s) 207
BseMII CTCAG 1 cut(s) 82
BseNI ACTGG 3 cut(s) 57, 166, 259
BseXI GCAGC 1 cut(s) 34
BshFI GGCC 1 cut(s) 5
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 1 cut(s) 121
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 81
BspMI ACCTGC 1 cut(s) 27
BspPI GGATC 1 cut(s) 129
BspQI GCTCTTC 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 207
BsrI ACTGG 3 cut(s) 57, 166, 259
BssMI GATC 1 cut(s) 121
Bst6I CTCTTC 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 20
BstDEI CTNAG 1 cut(s) 68
BstF5I GGATG 2 cut(s) 211, 219
BstKTI GATC 1 cut(s) 124
BstMBI GATC 1 cut(s) 121
BstMWI GCNNNNNNNGC 2 cut(s) 188, 197
BstV1I GCAGC 1 cut(s) 34
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 211, 219
BtsIMutI CAGTG 1 cut(s) 64
BveI ACCTGC 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 20
CviAII CATG 1 cut(s) 263
CviJI RGCY 7 cut(s) 5, 18, 25, 67, 107, 191, 229
CviKI_1 RGCY 7 cut(s) 5, 18, 25, 67, 107, 191, 229
DdeI CTNAG 1 cut(s) 68
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
FaeI CATG 1 cut(s) 266
FaiI YATR 2 cut(s) 119, 264
FatI CATG 1 cut(s) 262
Fnu4HI GCNGC 1 cut(s) 23
FokI GGATG 2 cut(s) 218, 226
Fsp4HI GCNGC 1 cut(s) 23
FspBI CTAG 1 cut(s) 108
GluI GCNGC 1 cut(s) 23
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 1 cut(s) 266
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HindIII AAGCTT 1 cut(s) 189
Hpy166II GTNNAC 3 cut(s) 51, 62, 220
Hpy188I TCNGA 1 cut(s) 172
Hpy188III TCNNGA 2 cut(s) 70, 282
Hpy8I GTNNAC 3 cut(s) 51, 62, 220
Hpy99I CGWCG 1 cut(s) 129
HpyAV CCTTC 2 cut(s) 190, 252
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 197
HpyF3I CTNAG 1 cut(s) 68
Hsp92II CATG 1 cut(s) 266
Kzo9I GATC 1 cut(s) 121
LguI GCTCTTC 1 cut(s) 32
LpnPI CCDG 7 cut(s) 22, 55, 70, 179, 196, 240, 263
Lsp1109I GCAGC 1 cut(s) 34
MaeI CTAG 1 cut(s) 108
MaeIII GTNAC 2 cut(s) 97, 157
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MboII GAAGA 1 cut(s) 19
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 74, 114
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 2 cut(s) 172, 219
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 77
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 113
Msp20I TGGCCA 1 cut(s) 5
MwoI GCNNNNNNNGC 2 cut(s) 188, 197
NdeII GATC 1 cut(s) 121
NlaIII CATG 1 cut(s) 266
PciSI GCTCTTC 1 cut(s) 32
PdmI GAANNNNTTC 1 cut(s) 77
PkrI GCNGC 1 cut(s) 24
SapI GCTCTTC 1 cut(s) 32
SaqAI TTAA 1 cut(s) 113
SatI GCNGC 1 cut(s) 23
Sau3AI GATC 1 cut(s) 121
SetI ASST 8 cut(s) 27, 41, 69, 109, 113, 148, 193, 278
Sse9I AATT 2 cut(s) 74, 114
SspMI CTAG 1 cut(s) 108
TaqI TCGA 1 cut(s) 127
TasI AATT 2 cut(s) 74, 114
Tru1I TTAA 1 cut(s) 113
Tru9I TTAA 1 cut(s) 113
TscAI CASTG 1 cut(s) 64
TseI GCWGC 1 cut(s) 22
TspDTI ATGAA 1 cut(s) 279
TspRI CASTG 1 cut(s) 64
XmnI GAANNNNTTC 1 cut(s) 77
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.