RNA-binding protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G46020 |
| fragaria_vesca | FvH4_3g35150 |
| malus_domestica | MD03G1098400.v1.1 |
| prunus_persica | Prupe.1G207800_v2.0.a1 Prupe.2G070500_v2.0.a1 Prupe.6G082600_v2.0.a1 Prupe.6G082600_v2.0.a1 Prupe.6G082600_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr1g0340281 RchiOBHm_Chr5g0063171 RchiOBHm_Chr5g0063221 |
| rosa_multiflora | Rmu_sc0005045.1_g000025 |
| rosa_roxburghii | Rroxscaffold_1G00017480 |
| rosa_rugosa | Rorug05G0354800 Rorug05G0354800 Rorug05G0355200 Rorug05G0355300 Rorug05G0355400 |
| rosa_samantha | Rh5AG415100 Rh5BG430100 Rh5CG453600 Rh5DG443600 |
| rosa_wichuraiana | Rw5G039020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 1 cut(s) | 242 |
| AgsI | TTSAA | 2 cut(s) | 196, 242 |
| AluBI | AGCT | 4 cut(s) | 18, 25, 107, 191 |
| AluI | AGCT | 4 cut(s) | 18, 25, 107, 191 |
| Alw21I | GWGCWC | 1 cut(s) | 20 |
| AoxI | GGCC | 2 cut(s) | 3, 198 |
| ApeKI | GCWGC | 1 cut(s) | 22 |
| ApoI | RAATTY | 1 cut(s) | 242 |
| AspS9I | GGNCC | 1 cut(s) | 121 |
| AvaII | GGWCC | 1 cut(s) | 121 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BanII | GRGCYC | 1 cut(s) | 20 |
| Bbv12I | GWGCWC | 1 cut(s) | 20 |
| BbvI | GCAGC | 1 cut(s) | 34 |
| BccI | CCATC | 2 cut(s) | 208, 215 |
| BciVI | GTATCC | 1 cut(s) | 265 |
| BfaI | CTAG | 1 cut(s) | 108 |
| BfuI | GTATCC | 1 cut(s) | 265 |
| BisI | GCNGC | 1 cut(s) | 23 |
| BlsI | GCNGC | 1 cut(s) | 24 |
| Bme18I | GGWCC | 1 cut(s) | 121 |
| BmgT120I | GGNCC | 1 cut(s) | 121 |
| BpuEI | CTTGAG | 1 cut(s) | 53 |
| BsaBI | GATNNNNATC | 1 cut(s) | 43 |
| Bse8I | GATNNNNATC | 1 cut(s) | 43 |
| BseGI | GGATG | 1 cut(s) | 219 |
| BseJI | GATNNNNATC | 1 cut(s) | 43 |
| BseXI | GCAGC | 1 cut(s) | 34 |
| BshFI | GGCC | 2 cut(s) | 5, 200 |
| BsiHKAI | GWGCWC | 1 cut(s) | 20 |
| BsnI | GGCC | 2 cut(s) | 5, 200 |
| Bsp1286I | GDGCHC | 1 cut(s) | 20 |
| BspANI | GGCC | 2 cut(s) | 5, 200 |
| BspQI | GCTCTTC | 1 cut(s) | 32 |
| Bst4CI | ACNGT | 1 cut(s) | 125 |
| Bst6I | CTCTTC | 1 cut(s) | 32 |
| BstC8I | GCNNGC | 1 cut(s) | 20 |
| BstF5I | GGATG | 1 cut(s) | 219 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 188, 197 |
| BstV1I | GCAGC | 1 cut(s) | 34 |
| BsuI | GTATCC | 1 cut(s) | 265 |
| BsuRI | GGCC | 2 cut(s) | 5, 200 |
| BtsCI | GGATG | 1 cut(s) | 219 |
| Cac8I | GCNNGC | 1 cut(s) | 20 |
| Cfr13I | GGNCC | 1 cut(s) | 121 |
| CviAII | CATG | 1 cut(s) | 202 |
| CviJI | RGCY | 8 cut(s) | 5, 18, 25, 76, 107, 191, 200, 229 |
| CviKI_1 | RGCY | 8 cut(s) | 5, 18, 25, 76, 107, 191, 200, 229 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 1 cut(s) | 32 |
| EarI | CTCTTC | 1 cut(s) | 32 |
| Ecl136II | GAGCTC | 1 cut(s) | 18 |
| Eco24I | GRGCYC | 1 cut(s) | 20 |
| Eco47I | GGWCC | 1 cut(s) | 121 |
| Eco53kI | GAGCTC | 1 cut(s) | 18 |
| EcoICRI | GAGCTC | 1 cut(s) | 18 |
| EcoT38I | GRGCYC | 1 cut(s) | 20 |
| FaeI | CATG | 1 cut(s) | 205 |
| FaiI | YATR | 2 cut(s) | 128, 203 |
| FatI | CATG | 1 cut(s) | 201 |
| Fnu4HI | GCNGC | 1 cut(s) | 23 |
| FokI | GGATG | 1 cut(s) | 226 |
| FriOI | GRGCYC | 1 cut(s) | 20 |
| Fsp4HI | GCNGC | 1 cut(s) | 23 |
| FspBI | CTAG | 1 cut(s) | 108 |
| GluI | GCNGC | 1 cut(s) | 23 |
| HaeIII | GGCC | 2 cut(s) | 5, 200 |
| Hin1II | CATG | 1 cut(s) | 205 |
| HincII | GTYRAC | 1 cut(s) | 34 |
| HindII | GTYRAC | 1 cut(s) | 34 |
| HindIII | AAGCTT | 1 cut(s) | 189 |
| HinfI | GANTC | 2 cut(s) | 147, 253 |
| Hpy166II | GTNNAC | 3 cut(s) | 34, 51, 121 |
| Hpy188I | TCNGA | 1 cut(s) | 172 |
| Hpy188III | TCNNGA | 2 cut(s) | 70, 282 |
| Hpy8I | GTNNAC | 3 cut(s) | 34, 51, 121 |
| HpyAV | CCTTC | 1 cut(s) | 190 |
| HpyCH4III | ACNGT | 1 cut(s) | 125 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 188, 197 |
| Hsp92II | CATG | 1 cut(s) | 205 |
| LguI | GCTCTTC | 1 cut(s) | 32 |
| LpnPI | CCDG | 4 cut(s) | 196, 248, 254, 263 |
| Lsp1109I | GCAGC | 1 cut(s) | 34 |
| MaeI | CTAG | 1 cut(s) | 108 |
| MaeIII | GTNAC | 2 cut(s) | 97, 157 |
| MboII | GAAGA | 1 cut(s) | 19 |
| MhlI | GDGCHC | 1 cut(s) | 20 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 2 cut(s) | 231, 242 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MnlI | CCTC | 3 cut(s) | 66, 172, 219 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 188, 197 |
| NlaIII | CATG | 1 cut(s) | 205 |
| NmuCI | GTSAC | 1 cut(s) | 157 |
| PciSI | GCTCTTC | 1 cut(s) | 32 |
| PfeI | GAWTC | 2 cut(s) | 147, 253 |
| PkrI | GCNGC | 1 cut(s) | 24 |
| Psp124BI | GAGCTC | 1 cut(s) | 20 |
| PspPI | GGNCC | 1 cut(s) | 121 |
| SacI | GAGCTC | 1 cut(s) | 20 |
| SapI | GCTCTTC | 1 cut(s) | 32 |
| SatI | GCNGC | 1 cut(s) | 23 |
| Sau96I | GGNCC | 1 cut(s) | 121 |
| SduI | GDGCHC | 1 cut(s) | 20 |
| SetI | ASST | 4 cut(s) | 20, 27, 109, 193 |
| SinI | GGWCC | 1 cut(s) | 121 |
| SmlI | CTYRAG | 1 cut(s) | 68 |
| SmoI | CTYRAG | 1 cut(s) | 68 |
| Sse9I | AATT | 2 cut(s) | 231, 242 |
| SspMI | CTAG | 1 cut(s) | 108 |
| SstI | GAGCTC | 1 cut(s) | 20 |
| TaaI | ACNGT | 1 cut(s) | 125 |
| TaqI | TCGA | 1 cut(s) | 177 |
| TasI | AATT | 2 cut(s) | 231, 242 |
| TfiI | GAWTC | 2 cut(s) | 147, 253 |
| TseFI | GTSAC | 1 cut(s) | 157 |
| TseI | GCWGC | 1 cut(s) | 22 |
| Tsp45I | GTSAC | 1 cut(s) | 157 |
| TspDTI | ATGAA | 2 cut(s) | 75, 218 |
| VpaK11BI | GGWCC | 1 cut(s) | 121 |
| XapI | RAATTY | 1 cut(s) | 242 |
| XspI | CTAG | 1 cut(s) | 108 |