Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008329

Physical Location & Seq

Genomic Coordinates Forward (+)

44373417 .. 44377422

Gene Structure 4006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0354800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGAAATAACAGCCCACTCTCTTTCCCATTTCTCTGCATCTCCTCGCTTGTTTCGTTCCAAAGCCTCCGCCTCTTCTCTTGTTGCTTCTACTACTGCACTACCATTTCAGTGCTCCAACAACATTCTTACACGACAGCCCCAAGTCCAAGCCGTCAGGATCAAACCGAAGCAGCAACGAACCATAGGCGTTGGCCCCATATGTGCCTCTAACACACAAACTCCTCCTACAGATGTTTCCGAAAGATGGCTTCTGGAGCCTGTGGGTGATGGAGATACAAGGCATATTGGTTTCAAGGTTCAAATGCCGAATGCATTTGAAATTGCTTCTAATGTGATGACTGTTGGCCGCCTTCCTGAGAAAGCTGATTTAGTGATTCCAGTTGCAACAGTATCTGGTTTGCATGCTCGCATTCGAAAGAAAGATGGGAACCTCTTGGTAACAGATTTGGACAGCACCAATGGGACATTCATTGATGACCAACGGCTGAGACCCGGAGTTGTTGCCACCTTATCACCTGGATCTTGTGTTACATTTGGAAACCGAGTCGGTCCACTATGTGCCCAAAAAATACATCTAACGTGCAAAATGAAGGCAATGCAATTGAAAAAGAAGAAAAGAAGAGGAATGGGGTTGAGTATGCTAGGAGATGAACATTTGGCTGTGTTTCGCGTCTCAAAGTTCGATAATGTAGAAGCTGCAAGCAATCCAGGTCCCTCTGAAGATAAAGTAGAGACTGTCATCCCTGAAGAAATCCCTACTGAAAACAGTAAAACAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006417 GO:0006996 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010494 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016043 GO:0017148 GO:0019219 GO:0019222 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032991 GO:0034063 GO:0034248 GO:0034249 GO:0034250 GO:0034622 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043487 GO:0043488 GO:0043489 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045182 GO:0045727 GO:0045934 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070181 GO:0070925 GO:0071826 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312 GO:1990904 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

260

Amino Acids

28.21

Weight (kDa)

9.51

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yop-YscD_cpl	PF16697	105 - 187	6.8e-09	Inner membrane component of T3SS, cytoplasmic domain
FHA	PF00498	114 - 180	3.7e-15	FHA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46020
fragaria_vesca	FvH4_3g35150
malus_domestica	MD03G1098400.v1.1
prunus_persica	Prupe.1G207800_v2.0.a1 Prupe.2G070500_v2.0.a1 Prupe.6G082600_v2.0.a1 Prupe.6G082600_v2.0.a1 Prupe.6G082600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0340281 RchiOBHm_Chr5g0063171 RchiOBHm_Chr5g0063221
rosa_multiflora	Rmu_sc0005045.1_g000025
rosa_roxburghii	Rroxscaffold_1G00017480
rosa_rugosa	Rorug05G0354800 Rorug05G0354800 Rorug05G0355200 Rorug05G0355300 Rorug05G0355400
rosa_samantha	Rh5AG415100 Rh5BG430100 Rh5CG453600 Rh5DG443600
rosa_wichuraiana	Rw5G039020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	672
AciI	CCGC	2 cut(s)	69, 349
AclWI	GGATC	2 cut(s)	167, 529
AcoI	YGGCCR	1 cut(s)	346
AcuI	CTGAAG	2 cut(s)	741, 768
AdeI	CACNNNGTG	1 cut(s)	560
AfiI	CCNNNNNNNGG	1 cut(s)	246
AgsI	TTSAA	4 cut(s)	295, 302, 320, 607
AjnI	CCWGG	2 cut(s)	517, 709
AjuI	GAANNNNNNNTTGG	2 cut(s)	452, 484
AluBI	AGCT	2 cut(s)	365, 698
AluI	AGCT	2 cut(s)	365, 698
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	3 cut(s)	484, 679, 728
AlwI	GGATC	2 cut(s)	167, 529
AlwNI	CAGNNNCTG	1 cut(s)	395
AoxI	GGCC	2 cut(s)	193, 346
ApeKI	GCWGC	2 cut(s)	172, 698
AspS9I	GGNCC	3 cut(s)	194, 551, 713
AsuC2I	CCSGG	1 cut(s)	495
AsuHPI	GGTGA	2 cut(s)	278, 507
AsuII	TTCGAA	1 cut(s)	415
AvaII	GGWCC	2 cut(s)	551, 713
BaeGI	GKGCMC	1 cut(s)	565
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	2 cut(s)	184, 685
BccI	CCATC	3 cut(s)	240, 263, 419
BceAI	ACGGC	2 cut(s)	137, 500
BciT130I	CCWGG	2 cut(s)	519, 711
BcnI	CCSGG	1 cut(s)	495
BcoDI	GTCTC	3 cut(s)	484, 679, 728
BfaI	CTAG	1 cut(s)	644
BfmI	CTRYAG	1 cut(s)	228
BisI	GCNGC	3 cut(s)	173, 349, 699
BlsI	GCNGC	3 cut(s)	174, 350, 700
Bme1390I	CCNGG	3 cut(s)	495, 519, 711
Bme18I	GGWCC	2 cut(s)	551, 713
BmgT120I	GGNCC	3 cut(s)	194, 551, 713
BmiI	GGNNCC	4 cut(s)	196, 258, 431, 715
BmrFI	CCNGG	3 cut(s)	495, 519, 711
BmsI	GCATC	1 cut(s)	47
BpmI	CTGGAG	1 cut(s)	275
Bpu14I	TTCGAA	1 cut(s)	415
BpuMI	CCSGG	1 cut(s)	495
BsaI	GGTCTC	1 cut(s)	484
BsaXI	ACNNNNNCTCC	2 cut(s)	205, 235
Bsc4I	CCNNNNNNNGG	1 cut(s)	246
Bse1I	ACTGG	1 cut(s)	380
Bse3DI	GCAATG	1 cut(s)	603
BseBI	CCWGG	2 cut(s)	519, 711
BseGI	GGATG	1 cut(s)	741
BseLI	CCNNNNNNNGG	1 cut(s)	246
BseMI	GCAATG	1 cut(s)	603
BseMII	CTCAG	2 cut(s)	348, 479
BseNI	ACTGG	1 cut(s)	380
BseRI	GAGGAG	2 cut(s)	33, 213
BseSI	GKGCMC	1 cut(s)	565
BseXI	GCAGC	2 cut(s)	184, 685
BsgI	GTGCAG	1 cut(s)	81
Bsh1236I	CGCG	1 cut(s)	672
BshFI	GGCC	2 cut(s)	195, 348
BsiHKAI	GWGCWC	1 cut(s)	116
BsiSI	CCGG	1 cut(s)	495
BslFI	GGGAC	2 cut(s)	478, 699
BslI	CCNNNNNNNGG	1 cut(s)	246
BsmAI	GTCTC	3 cut(s)	484, 679, 728
BsmBI	CGTCTC	1 cut(s)	679
BsmFI	GGGAC	2 cut(s)	478, 699
BsmI	GAATGC	2 cut(s)	316, 411
BsnI	GGCC	2 cut(s)	195, 348
Bso31I	GGTCTC	1 cut(s)	484
Bsp119I	TTCGAA	1 cut(s)	415
Bsp1286I	GDGCHC	2 cut(s)	116, 565
Bsp143I	GATC	2 cut(s)	159, 521
BspACI	CCGC	2 cut(s)	69, 349
BspANI	GGCC	2 cut(s)	195, 348
BspCNI	CTCAG	2 cut(s)	349, 480
BspFNI	CGCG	1 cut(s)	672
BspLI	GGNNCC	4 cut(s)	196, 258, 431, 715
BspPI	GGATC	2 cut(s)	167, 529
BspT104I	TTCGAA	1 cut(s)	415
BspTNI	GGTCTC	1 cut(s)	484
BsrDI	GCAATG	1 cut(s)	603
BsrI	ACTGG	1 cut(s)	380
BssMI	GATC	2 cut(s)	159, 521
Bst2UI	CCWGG	2 cut(s)	519, 711
Bst4CI	ACNGT	4 cut(s)	343, 391, 739, 770
Bst6I	CTCTTC	2 cut(s)	79, 616
BstBI	TTCGAA	1 cut(s)	415
BstC8I	GCNNGC	3 cut(s)	405, 409, 703
BstDEI	CTNAG	2 cut(s)	357, 488
BstF5I	GGATG	1 cut(s)	741
BstFNI	CGCG	1 cut(s)	672
BstKTI	GATC	2 cut(s)	162, 524
BstMAI	GTCTC	3 cut(s)	484, 679, 728
BstMBI	GATC	2 cut(s)	159, 521
BstMWI	GCNNNNNNNGC	1 cut(s)	256
BstNI	CCWGG	2 cut(s)	519, 711
BstNSI	RCATGY	1 cut(s)	407
BstSCI	CCNGG	3 cut(s)	493, 517, 709
BstSFI	CTRYAG	1 cut(s)	228
BstSLI	GKGCMC	1 cut(s)	565
BstUI	CGCG	1 cut(s)	672
BstV1I	GCAGC	2 cut(s)	184, 685
BstX2I	RGATCY	1 cut(s)	521
BstYI	RGATCY	1 cut(s)	521
BsuRI	GGCC	2 cut(s)	195, 348
BtsCI	GGATG	1 cut(s)	741
BtsIMutI	CAGTG	1 cut(s)	116
Cac8I	GCNNGC	3 cut(s)	405, 409, 703
CaiI	CAGNNNCTG	1 cut(s)	395
Cfr13I	GGNCC	3 cut(s)	194, 551, 713
CseI	GACGC	1 cut(s)	661
CviAII	CATG	1 cut(s)	404
DdeI	CTNAG	2 cut(s)	357, 488
DpnI	GATC	2 cut(s)	161, 523
DpnII	GATC	2 cut(s)	159, 521
DraIII	CACNNNGTG	1 cut(s)	560
EaeI	YGGCCR	1 cut(s)	346
Eam1104I	CTCTTC	2 cut(s)	79, 616
EarI	CTCTTC	2 cut(s)	79, 616
EciI	GGCGGA	1 cut(s)	58
Eco31I	GGTCTC	1 cut(s)	484
Eco47I	GGWCC	2 cut(s)	551, 713
Eco57I	CTGAAG	2 cut(s)	741, 768
EcoO109I	RGGNCCY	1 cut(s)	713
EcoRII	CCWGG	2 cut(s)	517, 709
EcoT22I	ATGCAT	1 cut(s)	316
Esp3I	CGTCTC	1 cut(s)	679
FaeI	CATG	1 cut(s)	407
FaiI	YATR	8 cut(s)	185, 200, 202, 285, 405, 559, 641, 781
FaqI	GGGAC	2 cut(s)	478, 699
FatI	CATG	1 cut(s)	403
FauNDI	CATATG	1 cut(s)	200
Fnu4HI	GCNGC	3 cut(s)	173, 349, 699
FokI	GGATG	1 cut(s)	728
Fsp4HI	GCNGC	3 cut(s)	173, 349, 699
FspBI	CTAG	1 cut(s)	644
GluI	GCNGC	3 cut(s)	173, 349, 699
GsuI	CTGGAG	1 cut(s)	275
HaeIII	GGCC	2 cut(s)	195, 348
HapII	CCGG	1 cut(s)	495
HgaI	GACGC	1 cut(s)	661
Hin1II	CATG	1 cut(s)	407
HinfI	GANTC	2 cut(s)	376, 546
HpaII	CCGG	1 cut(s)	495
HphI	GGTGA	2 cut(s)	278, 507
Hpy166II	GTNNAC	1 cut(s)	554
Hpy188I	TCNGA	2 cut(s)	241, 721
Hpy188III	TCNNGA	3 cut(s)	157, 254, 356
Hpy8I	GTNNAC	1 cut(s)	554
HpyAV	CCTTC	2 cut(s)	362, 586
HpyCH4III	ACNGT	4 cut(s)	343, 391, 739, 770
HpyCH4IV	ACGT	1 cut(s)	581
HpyCH4V	TGCA	8 cut(s)	38, 98, 314, 386, 403, 585, 601, 701
HpyF10VI	GCNNNNNNNGC	1 cut(s)	256
HpyF3I	CTNAG	2 cut(s)	357, 488
HpySE526I	ACGT	1 cut(s)	581
Hsp92II	CATG	1 cut(s)	407
Kzo9I	GATC	2 cut(s)	159, 521
LmnI	GCTCC	2 cut(s)	119, 256
Lsp1109I	GCAGC	2 cut(s)	184, 685
LweI	GCATC	1 cut(s)	47
MaeI	CTAG	1 cut(s)	644
MaeII	ACGT	1 cut(s)	581
MaeIII	GTNAC	2 cut(s)	439, 529
MalI	GATC	2 cut(s)	161, 523
MboI	GATC	2 cut(s)	159, 521
MboII	GAAGA	5 cut(s)	66, 625, 633, 734, 761
MfeI	CAATTG	1 cut(s)	602
MflI	RGATCY	1 cut(s)	521
MhlI	GDGCHC	2 cut(s)	116, 565
MluCI	AATT	2 cut(s)	321, 602
MlyI	GAGTC	1 cut(s)	555
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	8 cut(s)	54, 76, 82, 217, 234, 443, 617, 727
Mph1103I	ATGCAT	1 cut(s)	316
MslI	CAYNNNNRTG	1 cut(s)	109
MspI	CCGG	1 cut(s)	495
MspR9I	CCNGG	3 cut(s)	495, 519, 711
MunI	CAATTG	1 cut(s)	602
Mva1269I	GAATGC	2 cut(s)	316, 411
MvaI	CCWGG	2 cut(s)	519, 711
MvnI	CGCG	1 cut(s)	672
MwoI	GCNNNNNNNGC	1 cut(s)	256
NciI	CCSGG	1 cut(s)	495
NdeI	CATATG	1 cut(s)	200
NdeII	GATC	2 cut(s)	159, 521
NlaIII	CATG	1 cut(s)	407
NlaIV	GGNNCC	4 cut(s)	196, 258, 431, 715
NsiI	ATGCAT	1 cut(s)	316
NspI	RCATGY	1 cut(s)	407
NspV	TTCGAA	1 cut(s)	415
PaeI	GCATGC	1 cut(s)	407
PcsI	WCGNNNNNNNCGW	1 cut(s)	52
PctI	GAATGC	2 cut(s)	316, 411
PfeI	GAWTC	1 cut(s)	376
PkrI	GCNGC	3 cut(s)	174, 350, 700
PleI	GAGTC	1 cut(s)	554
PpsI	GAGTC	1 cut(s)	554
PpuMI	RGGWCCY	1 cut(s)	713
Psp5II	RGGWCCY	1 cut(s)	713
Psp6I	CCWGG	2 cut(s)	517, 709
PspGI	CCWGG	2 cut(s)	517, 709
PspN4I	GGNNCC	4 cut(s)	196, 258, 431, 715
PspPI	GGNCC	3 cut(s)	194, 551, 713
PspPPI	RGGWCCY	1 cut(s)	713
PstNI	CAGNNNCTG	1 cut(s)	395
PsuI	RGATCY	1 cut(s)	521
RseI	CAYNNNNRTG	1 cut(s)	109
SatI	GCNGC	3 cut(s)	173, 349, 699
Sau3AI	GATC	2 cut(s)	159, 521
Sau96I	GGNCC	3 cut(s)	194, 551, 713
SchI	GAGTC	1 cut(s)	555
ScrFI	CCNGG	3 cut(s)	495, 519, 711
SduI	GDGCHC	2 cut(s)	116, 565
SetI	ASST	8 cut(s)	300, 367, 435, 512, 520, 584, 700, 715
SfaNI	GCATC	1 cut(s)	47
SfcI	CTRYAG	1 cut(s)	228
SfuI	TTCGAA	1 cut(s)	415
SinI	GGWCC	2 cut(s)	551, 713
SmiMI	CAYNNNNRTG	1 cut(s)	109
SphI	GCATGC	1 cut(s)	407
Sse9I	AATT	2 cut(s)	321, 602
SsiI	CCGC	2 cut(s)	69, 349
SspMI	CTAG	1 cut(s)	644
StyD4I	CCNGG	3 cut(s)	493, 517, 709
TaaI	ACNGT	4 cut(s)	343, 391, 739, 770
TaiI	ACGT	1 cut(s)	584
TaqI	TCGA	2 cut(s)	415, 684
TaqII	GACCGA	1 cut(s)	539
TasI	AATT	2 cut(s)	321, 602
TauI	GCSGC	1 cut(s)	351
TfiI	GAWTC	1 cut(s)	376
TscAI	CASTG	1 cut(s)	116
TseI	GCWGC	2 cut(s)	172, 698
TspDTI	ATGAA	3 cut(s)	460, 605, 666
TspRI	CASTG	1 cut(s)	116
VpaK11BI	GGWCC	2 cut(s)	551, 713
XceI	RCATGY	1 cut(s)	407
XspI	CTAG	1 cut(s)	644
Zsp2I	ATGCAT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.