Rh5BG430100

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0008329
Physical Location & Seq
Forward (+)
69466767 .. 69482365
15599 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG430100.1

Sequence Viewer

Length: 372 bp
ATGGCTAAAAGATTAAGCTCAAGGCTCTTCGTCAGCAGATTATCATCATACACCACTAATGAAGGACTCAGGCAGATGTTTTCACCTTTTGGAGATGTCACAGAAGCTAGGTTAGTTATAGACCGTGAAACTCAAAGGCCCAAAGGTTTTGGTTTTGTGACATACAAGTCTGTGGTTGAGGCACAGAAGGCTATGAAGGTCATGGATGGCAGGGATTTCTTTAAGAAAAAAGGTGTGGCAGTTATGACCATTCGTGAGCTCTTTGATTTTATAGTTGATCCATGTATTGCTGATGATGCGGTGGACACTCATCTGGATGAGGACCAAACTATCAATTACCAAGGGCTCCGAGATTACATGGAAGCATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006417 GO:0006996 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010494 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016043 GO:0017148 GO:0019219 GO:0019222 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032991 GO:0034063 GO:0034248 GO:0034249 GO:0034250 GO:0034622 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043487 GO:0043488 GO:0043489 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045182 GO:0045727 GO:0045934 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070181 GO:0070925 GO:0071826 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

123

Amino Acids

14.15

Weight (kDa)

5.83

Isoelectric Point (pI)

24.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 9 - 76 1.9e-21 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 166
AciI CCGC 1 cut(s) 299
AclWI GGATC 1 cut(s) 272
AluBI AGCT 3 cut(s) 18, 107, 259
AluI AGCT 3 cut(s) 18, 107, 259
Alw21I GWGCWC 1 cut(s) 261
AlwI GGATC 1 cut(s) 272
AoxI GGCC 1 cut(s) 137
AspS9I GGNCC 2 cut(s) 138, 322
AsuHPI GGTGA 1 cut(s) 75
AvaII GGWCC 1 cut(s) 322
BanII GRGCYC 2 cut(s) 261, 348
Bbv12I GWGCWC 1 cut(s) 261
BccI CCATC 1 cut(s) 200
BfaI CTAG 1 cut(s) 108
Bme18I GGWCC 1 cut(s) 322
BmgT120I GGNCC 2 cut(s) 138, 322
BmiI GGNNCC 1 cut(s) 347
BmsI GCATC 1 cut(s) 286
BpuEI CTTGAG 1 cut(s) 4
BsaBI GATNNNNATC 1 cut(s) 43
BsaJI CCNNGG 1 cut(s) 340
Bse8I GATNNNNATC 1 cut(s) 43
BseDI CCNNGG 1 cut(s) 340
BseGI GGATG 2 cut(s) 211, 322
BseJI GATNNNNATC 1 cut(s) 43
BseMII CTCAG 1 cut(s) 82
BshFI GGCC 1 cut(s) 139
BsiHKAI GWGCWC 1 cut(s) 261
BsnI GGCC 1 cut(s) 139
Bsp1286I GDGCHC 2 cut(s) 261, 348
Bsp143I GATC 1 cut(s) 277
BspACI CCGC 1 cut(s) 299
BspANI GGCC 1 cut(s) 139
BspCNI CTCAG 1 cut(s) 81
BspLI GGNNCC 1 cut(s) 347
BspPI GGATC 1 cut(s) 272
BspQI GCTCTTC 1 cut(s) 32
BssECI CCNNGG 1 cut(s) 340
BssMI GATC 1 cut(s) 277
BssT1I CCWWGG 1 cut(s) 340
Bst4CI ACNGT 1 cut(s) 125
Bst6I CTCTTC 1 cut(s) 32
BstDEI CTNAG 1 cut(s) 68
BstF5I GGATG 2 cut(s) 211, 322
BstKTI GATC 1 cut(s) 280
BstMBI GATC 1 cut(s) 277
BstMWI GCNNNNNNNGC 2 cut(s) 188, 296
BsuRI GGCC 1 cut(s) 139
BtsCI GGATG 2 cut(s) 211, 322
Cfr13I GGNCC 2 cut(s) 138, 322
CviAII CATG 3 cut(s) 202, 282, 358
CviJI RGCY 8 cut(s) 5, 18, 25, 107, 139, 191, 259, 346
CviKI_1 RGCY 8 cut(s) 5, 18, 25, 107, 139, 191, 259, 346
DdeI CTNAG 1 cut(s) 68
DpnI GATC 1 cut(s) 279
DpnII GATC 1 cut(s) 277
DrdI GACNNNNNNGTC 1 cut(s) 166
DseDI GACNNNNNNGTC 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Ecl136II GAGCTC 1 cut(s) 259
Eco130I CCWWGG 1 cut(s) 340
Eco24I GRGCYC 2 cut(s) 261, 348
Eco47I GGWCC 1 cut(s) 322
Eco53kI GAGCTC 1 cut(s) 259
EcoICRI GAGCTC 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 340
EcoT38I GRGCYC 2 cut(s) 261, 348
ErhI CCWWGG 1 cut(s) 340
FaeI CATG 3 cut(s) 205, 285, 361
FaiI YATR 9 cut(s) 49, 119, 163, 194, 203, 245, 272, 283, 359
FatI CATG 3 cut(s) 201, 281, 357
FokI GGATG 2 cut(s) 218, 329
FriOI GRGCYC 2 cut(s) 261, 348
FspBI CTAG 1 cut(s) 108
HaeIII GGCC 1 cut(s) 139
Hin1II CATG 3 cut(s) 205, 285, 361
HinfI GANTC 1 cut(s) 66
HphI GGTGA 1 cut(s) 75
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 1 cut(s) 350
Hpy188III TCNNGA 2 cut(s) 254, 314
Hpy8I GTNNAC 1 cut(s) 304
HpyAV CCTTC 3 cut(s) 56, 181, 190
HpyCH4III ACNGT 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 296
HpyF3I CTNAG 1 cut(s) 68
Hsp92II CATG 3 cut(s) 205, 285, 361
Kzo9I GATC 1 cut(s) 277
LguI GCTCTTC 1 cut(s) 32
LmnI GCTCC 1 cut(s) 351
LpnPI CCDG 3 cut(s) 55, 196, 299
LweI GCATC 1 cut(s) 286
MaeI CTAG 1 cut(s) 108
MaeIII GTNAC 2 cut(s) 97, 157
MalI GATC 1 cut(s) 279
MboI GATC 1 cut(s) 277
MboII GAAGA 1 cut(s) 19
MhlI GDGCHC 2 cut(s) 261, 348
MluCI AATT 1 cut(s) 334
MlyI GAGTC 1 cut(s) 60
MnlI CCTC 2 cut(s) 172, 313
MseI TTAA 2 cut(s) 14, 222
MslI CAYNNNNRTG 1 cut(s) 315
MwoI GCNNNNNNNGC 2 cut(s) 188, 296
NdeII GATC 1 cut(s) 277
NlaIII CATG 3 cut(s) 205, 285, 361
NlaIV GGNNCC 1 cut(s) 347
NmuCI GTSAC 2 cut(s) 97, 157
PciSI GCTCTTC 1 cut(s) 32
PleI GAGTC 1 cut(s) 60
PpsI GAGTC 1 cut(s) 60
Psp124BI GAGCTC 1 cut(s) 261
PspN4I GGNNCC 1 cut(s) 347
PspPI GGNCC 2 cut(s) 138, 322
RseI CAYNNNNRTG 1 cut(s) 315
SacI GAGCTC 1 cut(s) 261
SapI GCTCTTC 1 cut(s) 32
SaqAI TTAA 2 cut(s) 14, 222
Sau3AI GATC 1 cut(s) 277
Sau96I GGNCC 2 cut(s) 138, 322
SchI GAGTC 1 cut(s) 60
SduI GDGCHC 2 cut(s) 261, 348
SetI ASST 8 cut(s) 20, 88, 109, 113, 148, 201, 235, 261
SfaNI GCATC 1 cut(s) 286
SinI GGWCC 1 cut(s) 322
SmiMI CAYNNNNRTG 1 cut(s) 315
SmlI CTYRAG 1 cut(s) 19
SmoI CTYRAG 1 cut(s) 19
Sse9I AATT 1 cut(s) 334
SsiI CCGC 1 cut(s) 299
SspMI CTAG 1 cut(s) 108
SstI GAGCTC 1 cut(s) 261
StyI CCWWGG 1 cut(s) 340
TaaI ACNGT 1 cut(s) 125
TasI AATT 1 cut(s) 334
Tru1I TTAA 2 cut(s) 14, 222
Tru9I TTAA 2 cut(s) 14, 222
TseFI GTSAC 2 cut(s) 97, 157
Tsp45I GTSAC 2 cut(s) 97, 157
TspDTI ATGAA 2 cut(s) 75, 209
VpaK11BI GGWCC 1 cut(s) 322
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.