Rorug05G0355300

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0008329
Physical Location & Seq
Forward (+)
44505117 .. 44505706
590 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0355300.1

Sequence Viewer

Length: 513 bp
ATGGAGGGTTTGAATAACAGAGTTGAGTGGTTGATGACCATGCTAGTGATAGTAATAATGATGATACTAATGTCGCATGCAGTTGAATCCAGGGAGCCAGTCCTTCATAGGGTTGGAGGGGGAAGGTTCAGTTGGGCCCCCGACATTAACTTCACAGATTGGTCAAGTAAAGAGCATTTCTATGTAGGCGATTGGCTCTATTTTGGGTTTGACAAACATATCTACAATGTCCTTGAGGTAAACAAGACCGGTTACGAGAATTGCTTCGACAAAGAATACATATACAATGTTACACGAGGCGGGCGTGATGTGTTCAACTTGACAGAGGCAAAGACATACTACTTTCTGAGCGGCCGAGGCTATTGCTACAAAGGGATGAAAGTTGCTGTTTTTGTTGAGCAAACCCCACCCGTACTTCACCTCAGCCCTGGTTTCAAATCATATTCATATACCAGCATCTACTTTATCATCATTCTCACTATGCTTGCCACTTGGACAATCATTTCTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006417 GO:0006996 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010494 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016043 GO:0017148 GO:0019219 GO:0019222 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032991 GO:0034063 GO:0034248 GO:0034249 GO:0034250 GO:0034622 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043487 GO:0043488 GO:0043489 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045182 GO:0045727 GO:0045934 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070181 GO:0070925 GO:0071826 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

170

Amino Acids

19.9

Weight (kDa)

6.51

Isoelectric Point (pI)

25.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 45 - 126 4e-18 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 351
AciI CCGC 2 cut(s) 300, 351
AcoI YGGCCR 1 cut(s) 352
AfaI GTAC 1 cut(s) 414
AfiI CCNNNNNNNGG 1 cut(s) 109
AgeI ACCGGT 1 cut(s) 248
AgsI TTSAA 4 cut(s) 13, 86, 316, 436
AjnI CCWGG 2 cut(s) 89, 427
AjuI GAANNNNNNNTTGG 2 cut(s) 115, 147
AoxI GGCC 2 cut(s) 135, 352
ApaI GGGCCC 1 cut(s) 139
AsiGI ACCGGT 1 cut(s) 248
Asp700I GAANNNNTTC 1 cut(s) 263
AspS9I GGNCC 2 cut(s) 135, 136
AsuHPI GGTGA 1 cut(s) 410
BaeGI GKGCMC 1 cut(s) 139
BaeI ACNNNNGTAYC 2 cut(s) 56, 89
BanII GRGCYC 1 cut(s) 139
BauI CACGAG 1 cut(s) 294
BbvCI CCTCAGC 1 cut(s) 422
BcgI CGANNNNNNTGC 2 cut(s) 345, 379
BciT130I CCWGG 2 cut(s) 91, 429
BfaI CTAG 2 cut(s) 44, 511
BisI GCNGC 1 cut(s) 352
BlsI GCNGC 1 cut(s) 353
Bme1390I CCNGG 2 cut(s) 91, 429
BmgT120I GGNCC 2 cut(s) 135, 136
BmiI GGNNCC 3 cut(s) 96, 137, 138
BmrFI CCNGG 2 cut(s) 91, 429
BmsI GCATC 1 cut(s) 465
Bpu10I CCTNAGC 1 cut(s) 422
BpuEI CTTGAG 1 cut(s) 254
BsaJI CCNNGG 3 cut(s) 90, 355, 427
BsaWI WCCGGW 1 cut(s) 248
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse118I RCCGGY 1 cut(s) 248
Bse1I ACTGG 1 cut(s) 98
BseBI CCWGG 2 cut(s) 91, 429
BseDI CCNNGG 3 cut(s) 90, 355, 427
BseGI GGATG 1 cut(s) 381
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMII CTCAG 2 cut(s) 338, 436
BseNI ACTGG 1 cut(s) 98
BseSI GKGCMC 1 cut(s) 139
BseX3I CGGCCG 1 cut(s) 352
Bsh1285I CGRYCG 1 cut(s) 355
BshFI GGCC 2 cut(s) 137, 354
BshTI ACCGGT 1 cut(s) 248
BsiEI CGRYCG 1 cut(s) 355
BsiSI CCGG 1 cut(s) 249
BslI CCNNNNNNNGG 1 cut(s) 109
BsnI GGCC 2 cut(s) 137, 354
Bsp120I GGGCCC 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 139
BspACI CCGC 2 cut(s) 300, 351
BspANI GGCC 2 cut(s) 137, 354
BspCNI CTCAG 2 cut(s) 339, 435
BspLI GGNNCC 3 cut(s) 96, 137, 138
BsrBI CCGCTC 1 cut(s) 351
BsrFI RCCGGY 1 cut(s) 248
BsrI ACTGG 1 cut(s) 98
BssAI RCCGGY 1 cut(s) 248
BssECI CCNNGG 3 cut(s) 90, 355, 427
BssSI CACGAG 1 cut(s) 294
Bst2BI CACGAG 1 cut(s) 294
Bst2UI CCWGG 2 cut(s) 91, 429
BstC8I GCNNGC 3 cut(s) 78, 302, 486
BstDEI CTNAG 2 cut(s) 347, 422
BstF5I GGATG 1 cut(s) 381
BstMCI CGRYCG 1 cut(s) 355
BstMWI GCNNNNNNNGC 1 cut(s) 357
BstNI CCWGG 2 cut(s) 91, 429
BstNSI RCATGY 1 cut(s) 80
BstSCI CCNGG 2 cut(s) 89, 427
BstSLI GKGCMC 1 cut(s) 139
BstZI CGGCCG 1 cut(s) 352
BsuRI GGCC 2 cut(s) 137, 354
BtsCI GGATG 1 cut(s) 381
Cac8I GCNNGC 3 cut(s) 78, 302, 486
Cfr10I RCCGGY 1 cut(s) 248
Cfr13I GGNCC 2 cut(s) 135, 136
Csp6I GTAC 1 cut(s) 413
CspAI ACCGGT 1 cut(s) 248
CviAII CATG 2 cut(s) 40, 77
CviJI RGCY 6 cut(s) 97, 137, 196, 354, 360, 426
CviKI_1 RGCY 6 cut(s) 97, 137, 196, 354, 360, 426
CviQI GTAC 1 cut(s) 413
DdeI CTNAG 2 cut(s) 347, 422
EaeI YGGCCR 1 cut(s) 352
EagI CGGCCG 1 cut(s) 352
EclXI CGGCCG 1 cut(s) 352
Eco24I GRGCYC 1 cut(s) 139
Eco52I CGGCCG 1 cut(s) 352
EcoO109I RGGNCCY 1 cut(s) 136
EcoRII CCWGG 2 cut(s) 89, 427
EcoT38I GRGCYC 1 cut(s) 139
FaeI CATG 2 cut(s) 43, 80
FatI CATG 2 cut(s) 39, 76
FauI CCCGC 1 cut(s) 293
Fnu4HI GCNGC 1 cut(s) 352
FokI GGATG 1 cut(s) 388
FriOI GRGCYC 1 cut(s) 139
Fsp4HI GCNGC 1 cut(s) 352
FspBI CTAG 2 cut(s) 44, 511
GluI GCNGC 1 cut(s) 352
HaeIII GGCC 2 cut(s) 137, 354
HapII CCGG 1 cut(s) 249
Hin1II CATG 2 cut(s) 43, 80
HinfI GANTC 1 cut(s) 86
HpaII CCGG 1 cut(s) 249
HphI GGTGA 1 cut(s) 410
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 1 cut(s) 348
Hpy8I GTNNAC 1 cut(s) 241
HpyAV CCTTC 2 cut(s) 113, 117
HpyCH4V TGCA 1 cut(s) 80
HpyF10VI GCNNNNNNNGC 1 cut(s) 357
HpyF3I CTNAG 2 cut(s) 347, 422
Hsp92II CATG 2 cut(s) 43, 80
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 7 cut(s) 76, 103, 111, 262, 414, 441, 466
LweI GCATC 1 cut(s) 465
MaeI CTAG 2 cut(s) 44, 511
MaeIII GTNAC 2 cut(s) 251, 289
MbiI CCGCTC 1 cut(s) 351
MhlI GDGCHC 1 cut(s) 139
MluCI AATT 1 cut(s) 259
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 6 cut(s) 110, 229, 290, 319, 350, 431
MroXI GAANNNNTTC 1 cut(s) 263
MseI TTAA 1 cut(s) 147
MslI CAYNNNNRTG 2 cut(s) 44, 180
MspI CCGG 1 cut(s) 249
MspR9I CCNGG 2 cut(s) 91, 429
MvaI CCWGG 2 cut(s) 91, 429
MwoI GCNNNNNNNGC 1 cut(s) 357
NlaIII CATG 2 cut(s) 43, 80
NlaIV GGNNCC 3 cut(s) 96, 137, 138
NmeAIII GCCGAG 1 cut(s) 380
NspI RCATGY 1 cut(s) 80
PaeI GCATGC 1 cut(s) 80
PcsI WCGNNNNNNNCGW 1 cut(s) 301
PdmI GAANNNNTTC 1 cut(s) 263
PfeI GAWTC 1 cut(s) 86
PinAI ACCGGT 1 cut(s) 248
PkrI GCNGC 1 cut(s) 353
Psp6I CCWGG 2 cut(s) 89, 427
PspGI CCWGG 2 cut(s) 89, 427
PspN4I GGNNCC 3 cut(s) 96, 137, 138
PspOMI GGGCCC 1 cut(s) 135
PspPI GGNCC 2 cut(s) 135, 136
RsaI GTAC 1 cut(s) 414
RsaNI GTAC 1 cut(s) 413
RseI CAYNNNNRTG 2 cut(s) 44, 180
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 1 cut(s) 352
Sau96I GGNCC 2 cut(s) 135, 136
ScrFI CCNGG 2 cut(s) 91, 429
SduI GDGCHC 1 cut(s) 139
SetI ASST 3 cut(s) 128, 240, 423
SfaNI GCATC 1 cut(s) 465
SmiMI CAYNNNNRTG 2 cut(s) 44, 180
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
SphI GCATGC 1 cut(s) 80
Sse9I AATT 1 cut(s) 259
SsiI CCGC 2 cut(s) 300, 351
SspMI CTAG 2 cut(s) 44, 511
StyD4I CCNGG 2 cut(s) 89, 427
TaqI TCGA 1 cut(s) 267
TasI AATT 1 cut(s) 259
TauI GCSGC 1 cut(s) 354
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TspDTI ATGAA 3 cut(s) 95, 392, 435
XceI RCATGY 1 cut(s) 80
XmnI GAANNNNTTC 1 cut(s) 263
XspI CTAG 2 cut(s) 44, 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.