RchiOBHm_Chr5g0063221

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0008329
Physical Location & Seq
Forward (+)
68961168 .. 68961820
653 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33934

Sequence Viewer

Length: 378 bp
ATGGCTAAAAGATTAAGCTCGAAGCTCTTCGTCAGCAGTACTCACTCCCACTCTTTTTTTTCCTCTCAAAGTTATATATATTTTGGGTTTCTTATAAAACCACAATTTGATCCTTTGCTTTGTGGCTTAGGATTATCATCATACACCACTAGTGAAGCACTCAGGCAGATGTTTTCACCTTTTGGAGATGTTACAGAAGCTAGGTTAGTTATAGACCGTGAAACTCAAAGGCCCAAAGGTTTTGGTTTTGTGACATACAAGTCTGAGGTTGAGGCACAGAAGGCTTTGAAGATCATGGATCGCAGGATGGTTAATGGGAGGCTACTTTCTGTTGAAGTTGCAGAGACTGAAAGACATTCAGAGGATATCAGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006417 GO:0006996 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010494 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016043 GO:0017148 GO:0019219 GO:0019222 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032991 GO:0034063 GO:0034248 GO:0034249 GO:0034250 GO:0034622 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043487 GO:0043488 GO:0043489 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045182 GO:0045727 GO:0045934 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070181 GO:0070925 GO:0071826 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

125

Amino Acids

14.18

Weight (kDa)

8.79

Isoelectric Point (pI)

44.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 44 - 109 3.8e-20 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 95
AasI GACNNNNNNGTC 1 cut(s) 259
AclWI GGATC 2 cut(s) 104, 306
AfaI GTAC 1 cut(s) 40
AgsI TTSAA 2 cut(s) 289, 335
AhlI ACTAGT 1 cut(s) 149
AluBI AGCT 4 cut(s) 18, 25, 200, 372
AluI AGCT 4 cut(s) 18, 25, 200, 372
Alw26I GTCTC 1 cut(s) 338
AlwI GGATC 2 cut(s) 104, 306
AlwNI CAGNNNCTG 1 cut(s) 347
AoxI GGCC 1 cut(s) 230
Asp700I GAANNNNTTC 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 231
AsuHPI GGTGA 1 cut(s) 168
BccI CCATC 1 cut(s) 301
BcoDI GTCTC 1 cut(s) 338
BcuI ACTAGT 1 cut(s) 149
BfaI CTAG 2 cut(s) 150, 201
BmcAI AGTACT 1 cut(s) 40
BmgT120I GGNCC 1 cut(s) 231
Bpu10I CCTNAGC 1 cut(s) 127
BsaBI GATNNNNATC 1 cut(s) 136
Bse8I GATNNNNATC 1 cut(s) 136
BseGI GGATG 1 cut(s) 312
BseJI GATNNNNATC 1 cut(s) 136
BseMII CTCAG 2 cut(s) 175, 255
BshFI GGCC 1 cut(s) 232
BsmAI GTCTC 1 cut(s) 338
BsnI GGCC 1 cut(s) 232
Bsp143I GATC 3 cut(s) 109, 291, 298
BspANI GGCC 1 cut(s) 232
BspCNI CTCAG 2 cut(s) 174, 256
BspPI GGATC 2 cut(s) 104, 306
BspQI GCTCTTC 1 cut(s) 32
BssMI GATC 3 cut(s) 109, 291, 298
Bst4CI ACNGT 1 cut(s) 218
Bst6I CTCTTC 1 cut(s) 32
BstDEI CTNAG 3 cut(s) 127, 161, 264
BstF5I GGATG 1 cut(s) 312
BstKTI GATC 3 cut(s) 112, 294, 301
BstMAI GTCTC 1 cut(s) 338
BstMBI GATC 3 cut(s) 109, 291, 298
BstMWI GCNNNNNNNGC 1 cut(s) 281
BsuRI GGCC 1 cut(s) 232
BtsCI GGATG 1 cut(s) 312
CaiI CAGNNNCTG 1 cut(s) 347
Cfr13I GGNCC 1 cut(s) 231
Csp6I GTAC 1 cut(s) 39
CviAII CATG 1 cut(s) 295
CviJI RGCY 9 cut(s) 5, 18, 25, 126, 200, 232, 284, 322, 372
CviKI_1 RGCY 9 cut(s) 5, 18, 25, 126, 200, 232, 284, 322, 372
CviQI GTAC 1 cut(s) 39
DdeI CTNAG 3 cut(s) 127, 161, 264
DpnI GATC 3 cut(s) 111, 293, 300
DpnII GATC 3 cut(s) 109, 291, 298
DrdI GACNNNNNNGTC 1 cut(s) 259
DseDI GACNNNNNNGTC 1 cut(s) 259
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
Eco32I GATATC 1 cut(s) 367
EcoRV GATATC 1 cut(s) 367
FaeI CATG 1 cut(s) 298
FaiI YATR 8 cut(s) 75, 77, 79, 95, 142, 212, 256, 296
FatI CATG 1 cut(s) 294
FokI GGATG 1 cut(s) 319
FspBI CTAG 2 cut(s) 150, 201
HaeIII GGCC 1 cut(s) 232
Hin1II CATG 1 cut(s) 298
HphI GGTGA 1 cut(s) 168
Hpy188I TCNGA 2 cut(s) 265, 361
Hpy188III TCNNGA 1 cut(s) 375
HpyAV CCTTC 1 cut(s) 274
HpyCH4III ACNGT 1 cut(s) 218
HpyCH4V TGCA 1 cut(s) 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 3 cut(s) 127, 161, 264
Hsp92II CATG 1 cut(s) 298
Kzo9I GATC 3 cut(s) 109, 291, 298
LguI GCTCTTC 1 cut(s) 32
LpnPI CCDG 2 cut(s) 148, 289
MaeI CTAG 2 cut(s) 150, 201
MaeIII GTNAC 2 cut(s) 190, 250
MalI GATC 3 cut(s) 111, 293, 300
MboI GATC 3 cut(s) 109, 291, 298
MboII GAAGA 2 cut(s) 19, 301
MluCI AATT 1 cut(s) 104
MnlI CCTC 5 cut(s) 73, 259, 265, 312, 355
MroXI GAANNNNTTC 1 cut(s) 26
MseI TTAA 2 cut(s) 14, 312
MwoI GCNNNNNNNGC 1 cut(s) 281
NdeII GATC 3 cut(s) 109, 291, 298
NlaIII CATG 1 cut(s) 298
NmuCI GTSAC 1 cut(s) 250
PciSI GCTCTTC 1 cut(s) 32
PdmI GAANNNNTTC 1 cut(s) 26
PsiI TTATAA 1 cut(s) 95
PspPI GGNCC 1 cut(s) 231
PstNI CAGNNNCTG 1 cut(s) 347
RsaI GTAC 1 cut(s) 40
RsaNI GTAC 1 cut(s) 39
SapI GCTCTTC 1 cut(s) 32
SaqAI TTAA 2 cut(s) 14, 312
Sau3AI GATC 3 cut(s) 109, 291, 298
Sau96I GGNCC 1 cut(s) 231
ScaI AGTACT 1 cut(s) 40
SetI ASST 8 cut(s) 20, 27, 181, 202, 206, 241, 270, 374
SgeI CNNG 8 cut(s) 31, 162, 175, 213, 230, 271, 307, 316
SpeI ACTAGT 1 cut(s) 149
Sse9I AATT 1 cut(s) 104
SspMI CTAG 2 cut(s) 150, 201
TaaI ACNGT 1 cut(s) 218
TaqI TCGA 1 cut(s) 20
TasI AATT 1 cut(s) 104
TatI WGTACW 1 cut(s) 38
Tru1I TTAA 2 cut(s) 14, 312
Tru9I TTAA 2 cut(s) 14, 312
TseFI GTSAC 1 cut(s) 250
Tsp45I GTSAC 1 cut(s) 250
XmnI GAANNNNTTC 1 cut(s) 26
XspI CTAG 2 cut(s) 150, 201
ZrmI AGTACT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.