Rh5AG415100

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0008329
Physical Location & Seq
Forward (+)
71697980 .. 71698743
764 bp
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UTR
Exon/CDS
Intron
Rh5AG415100.1

Sequence Viewer

Length: 330 bp
ATGTCAGTGATCAAGAAACCCGACTCTTGCTCAACACCATACGCTAGCCTCTGCTTCCAGAAGCCGTCCTCACTTCGGCCAGGATTATCATCATACACCACTAATGAAGGACTCAGGCAGATGTTTTCACCTTTTGGAGATGTCACAGAAGCTAGGTTAGTTATAGACCGTGAAACTCAAAGGCCCAAAGGTTTTGGTTTTGTGACATACAAGTCTGAGGTTGAGGCACAGAAGGCTATGAAGGTCATGGATGGCAGGATGGTTAATGGGAGGCTGCTTTTTGTTGAAGTTGCAGAGACTGAAAGGCATCCAGAGGATATCAGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006417 GO:0006996 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010494 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016043 GO:0017148 GO:0019219 GO:0019222 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032991 GO:0034063 GO:0034248 GO:0034249 GO:0034250 GO:0034622 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043487 GO:0043488 GO:0043489 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045182 GO:0045727 GO:0045934 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070181 GO:0070925 GO:0071826 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

109

Amino Acids

12.23

Weight (kDa)

7.76

Isoelectric Point (pI)

41.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 28 - 92 5.1e-21 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 211
AcoI YGGCCR 1 cut(s) 77
AfiI CCNNNNNNNGG 1 cut(s) 75
AgsI TTSAA 1 cut(s) 287
AjnI CCWGG 1 cut(s) 79
AluBI AGCT 2 cut(s) 152, 324
AluI AGCT 2 cut(s) 152, 324
Alw26I GTCTC 1 cut(s) 290
AlwNI CAGNNNCTG 1 cut(s) 299
AoxI GGCC 2 cut(s) 77, 182
ApeKI GCWGC 1 cut(s) 274
AspS9I GGNCC 1 cut(s) 183
AsuHPI GGTGA 1 cut(s) 120
AsuNHI GCTAGC 1 cut(s) 44
BbvI GCAGC 1 cut(s) 261
BccI CCATC 2 cut(s) 245, 253
BceAI ACGGC 1 cut(s) 49
BciT130I CCWGG 1 cut(s) 81
BclI TGATCA 1 cut(s) 9
BcoDI GTCTC 1 cut(s) 290
BfaI CTAG 2 cut(s) 45, 153
BisI GCNGC 1 cut(s) 275
BlsI GCNGC 1 cut(s) 276
Bme1390I CCNGG 1 cut(s) 81
BmgT120I GGNCC 1 cut(s) 183
BmrFI CCNGG 1 cut(s) 81
BmsI GCATC 1 cut(s) 316
BmtI GCTAGC 1 cut(s) 48
BsaBI GATNNNNATC 1 cut(s) 88
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse8I GATNNNNATC 1 cut(s) 88
BseBI CCWGG 1 cut(s) 81
BseGI GGATG 3 cut(s) 256, 264, 307
BseJI GATNNNNATC 1 cut(s) 88
BseLI CCNNNNNNNGG 1 cut(s) 75
BseMII CTCAG 2 cut(s) 127, 207
BseXI GCAGC 1 cut(s) 261
BshFI GGCC 2 cut(s) 79, 184
BslI CCNNNNNNNGG 1 cut(s) 75
BsmAI GTCTC 1 cut(s) 290
BsnI GGCC 2 cut(s) 79, 184
Bsp143I GATC 1 cut(s) 9
BspANI GGCC 2 cut(s) 79, 184
BspCNI CTCAG 2 cut(s) 126, 208
BspOI GCTAGC 1 cut(s) 48
BssMI GATC 1 cut(s) 9
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 46
BstDEI CTNAG 2 cut(s) 113, 216
BstF5I GGATG 3 cut(s) 256, 264, 307
BstKTI GATC 1 cut(s) 12
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 1 cut(s) 9
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNI CCWGG 1 cut(s) 81
BstSCI CCNGG 1 cut(s) 79
BstV1I GCAGC 1 cut(s) 261
BsuRI GGCC 2 cut(s) 79, 184
BtsCI GGATG 3 cut(s) 256, 264, 307
BtsIMutI CAGTG 1 cut(s) 12
Cac8I GCNNGC 1 cut(s) 46
CaiI CAGNNNCTG 1 cut(s) 299
Cfr13I GGNCC 1 cut(s) 183
CviAII CATG 1 cut(s) 247
CviJI RGCY 8 cut(s) 48, 64, 79, 152, 184, 236, 274, 324
CviKI_1 RGCY 8 cut(s) 48, 64, 79, 152, 184, 236, 274, 324
DdeI CTNAG 2 cut(s) 113, 216
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
DrdI GACNNNNNNGTC 1 cut(s) 211
DseDI GACNNNNNNGTC 1 cut(s) 211
EaeI YGGCCR 1 cut(s) 77
Eco32I GATATC 1 cut(s) 319
EcoRII CCWGG 1 cut(s) 79
EcoRV GATATC 1 cut(s) 319
FaeI CATG 1 cut(s) 250
FaiI YATR 6 cut(s) 40, 94, 164, 208, 239, 248
FatI CATG 1 cut(s) 246
FbaI TGATCA 1 cut(s) 9
Fnu4HI GCNGC 1 cut(s) 275
FokI GGATG 3 cut(s) 263, 271, 294
Fsp4HI GCNGC 1 cut(s) 275
FspBI CTAG 2 cut(s) 45, 153
GluI GCNGC 1 cut(s) 275
HaeIII GGCC 2 cut(s) 79, 184
Hin1II CATG 1 cut(s) 250
HinfI GANTC 2 cut(s) 23, 111
HphI GGTGA 1 cut(s) 120
Hpy188I TCNGA 1 cut(s) 217
Hpy188III TCNNGA 4 cut(s) 13, 58, 311, 327
HpyAV CCTTC 3 cut(s) 101, 226, 235
HpyCH4III ACNGT 1 cut(s) 170
HpyCH4V TGCA 1 cut(s) 293
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 2 cut(s) 113, 216
Hsp92II CATG 1 cut(s) 250
Ksp22I TGATCA 1 cut(s) 9
Kzo9I GATC 1 cut(s) 9
LpnPI CCDG 6 cut(s) 66, 71, 93, 100, 241, 324
Lsp1109I GCAGC 1 cut(s) 261
LweI GCATC 1 cut(s) 316
MaeI CTAG 2 cut(s) 45, 153
MaeIII GTNAC 2 cut(s) 142, 202
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MlyI GAGTC 2 cut(s) 17, 105
MnlI CCTC 6 cut(s) 59, 79, 211, 217, 264, 307
MseI TTAA 1 cut(s) 264
MspR9I CCNGG 1 cut(s) 81
MvaI CCWGG 1 cut(s) 81
MwoI GCNNNNNNNGC 1 cut(s) 233
NdeII GATC 1 cut(s) 9
NheI GCTAGC 1 cut(s) 44
NlaIII CATG 1 cut(s) 250
NmuCI GTSAC 2 cut(s) 142, 202
PkrI GCNGC 1 cut(s) 276
PleI GAGTC 2 cut(s) 17, 105
PpsI GAGTC 2 cut(s) 17, 105
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PspPI GGNCC 1 cut(s) 183
PstNI CAGNNNCTG 1 cut(s) 299
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 1 cut(s) 275
Sau3AI GATC 1 cut(s) 9
Sau96I GGNCC 1 cut(s) 183
SchI GAGTC 2 cut(s) 17, 105
ScrFI CCNGG 1 cut(s) 81
SetI ASST 7 cut(s) 133, 154, 158, 193, 222, 246, 326
SfaNI GCATC 1 cut(s) 316
SspMI CTAG 2 cut(s) 45, 153
StyD4I CCNGG 1 cut(s) 79
TaaI ACNGT 1 cut(s) 170
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TscAI CASTG 1 cut(s) 12
TseFI GTSAC 2 cut(s) 142, 202
TseI GCWGC 1 cut(s) 274
Tsp45I GTSAC 2 cut(s) 142, 202
TspDTI ATGAA 2 cut(s) 120, 254
TspRI CASTG 1 cut(s) 12
XspI CTAG 2 cut(s) 45, 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.