Rh5DG443600

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0008329
Physical Location & Seq
Forward (+)
70989131 .. 70994748
5618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG443600.1

Sequence Viewer

Length: 615 bp
ATGTCAGTGATCAAGAAACCCGACTCTTGCTCAACACCATACGCTAGCCTCTGCTTCCAGAAGCCGTCCTCACTTCGGCCAGGATTATCATCATACACCACTAATGAAGGACTCAGGCAGATGTTTTCACCTTTTGGAGATGTCACAGAAGCTAGGTTAGTTATAGACCGTGAAACTCAAAGGCCCAAAGGTTTTGGTTTTGTGACATACAAGTCTGTGGTTGAGGCACAGAAGGCTATGAAGGTCATGGATGGCAGGGATTTCTTTAAGAAAAAAGGTGTGGCAGTTATGACGATTCGTGAGCTCTTTGATTTTATAGTTGATCCATGTATTGCTGATGATGCGGTGGACACTCATCTGGATGAGATCATACCTCTTGCTCCTACCGAGCTCGACTGGCTCCGTCCAACTCCGCCTCAGCGCAGCAGCTCCGGCTCTAAACCACCGCAACTGCAGCCTCCTGAAGCAGCTCCGCCCCAGTACAGCAGCAGCTCGACGATCGCAGCTTCAGGGTTTAGGAGAACTCGACCCAAAGATCCACAATCAAGATCCACGCTGTCACAATCAAGATATACTTTCAACCCAATGTATACAGAGAGAGAGAAGGAGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006417 GO:0006996 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010494 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016043 GO:0017148 GO:0019219 GO:0019222 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032991 GO:0034063 GO:0034248 GO:0034249 GO:0034250 GO:0034622 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043487 GO:0043488 GO:0043489 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045182 GO:0045727 GO:0045934 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070181 GO:0070925 GO:0071826 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

204

Amino Acids

22.81

Weight (kDa)

8.96

Isoelectric Point (pI)

54.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 28 - 91 7.4e-19 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 211
AccI GTMKAC 1 cut(s) 590
AciI CCGC 4 cut(s) 344, 413, 446, 473
AclWI GGATC 3 cut(s) 317, 530, 543
AcoI YGGCCR 1 cut(s) 77
AcuI CTGAAG 2 cut(s) 483, 492
AfaI GTAC 1 cut(s) 482
AfiI CCNNNNNNNGG 1 cut(s) 75
AgsI TTSAA 1 cut(s) 580
AjnI CCWGG 1 cut(s) 79
AluBI AGCT 7 cut(s) 152, 304, 391, 429, 470, 492, 506
AluI AGCT 7 cut(s) 152, 304, 391, 429, 470, 492, 506
Alw21I GWGCWC 2 cut(s) 306, 393
AlwI GGATC 3 cut(s) 317, 530, 543
AoxI GGCC 2 cut(s) 77, 182
ApeKI GCWGC 7 cut(s) 423, 426, 454, 467, 486, 489, 503
AspLEI GCGC 1 cut(s) 423
AspS9I GGNCC 1 cut(s) 183
AsuHPI GGTGA 1 cut(s) 120
AsuNHI GCTAGC 1 cut(s) 44
BanII GRGCYC 2 cut(s) 306, 393
Bbv12I GWGCWC 2 cut(s) 306, 393
BbvCI CCTCAGC 1 cut(s) 417
BbvI GCAGC 7 cut(s) 435, 438, 466, 479, 498, 501, 515
BccI CCATC 1 cut(s) 245
BceAI ACGGC 1 cut(s) 49
BciT130I CCWGG 1 cut(s) 81
BclI TGATCA 1 cut(s) 9
BfaI CTAG 2 cut(s) 45, 153
BfmI CTRYAG 1 cut(s) 452
BisI GCNGC 7 cut(s) 424, 427, 455, 468, 487, 490, 504
BlsI GCNGC 7 cut(s) 425, 428, 456, 469, 488, 491, 505
Bme1390I CCNGG 1 cut(s) 81
BmgT120I GGNCC 1 cut(s) 183
BmiI GGNNCC 1 cut(s) 401
BmrFI CCNGG 1 cut(s) 81
BmrI ACTGGG 1 cut(s) 472
BmsI GCATC 1 cut(s) 331
BmtI GCTAGC 1 cut(s) 48
BmuI ACTGGG 1 cut(s) 472
Bpu10I CCTNAGC 1 cut(s) 417
BsaBI GATNNNNATC 1 cut(s) 88
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse1I ACTGG 2 cut(s) 401, 478
Bse8I GATNNNNATC 1 cut(s) 88
BseBI CCWGG 1 cut(s) 81
BseGI GGATG 2 cut(s) 256, 367
BseJI GATNNNNATC 1 cut(s) 88
BseLI CCNNNNNNNGG 1 cut(s) 75
BseMII CTCAG 2 cut(s) 127, 431
BseNI ACTGG 2 cut(s) 401, 478
BseXI GCAGC 7 cut(s) 435, 438, 466, 479, 498, 501, 515
Bsh1285I CGRYCG 1 cut(s) 501
BshFI GGCC 2 cut(s) 79, 184
BsiEI CGRYCG 1 cut(s) 501
BsiHKAI GWGCWC 2 cut(s) 306, 393
BsiSI CCGG 1 cut(s) 432
BslI CCNNNNNNNGG 1 cut(s) 75
BsnI GGCC 2 cut(s) 79, 184
Bsp1286I GDGCHC 2 cut(s) 306, 393
Bsp143I GATC 6 cut(s) 9, 322, 366, 498, 535, 548
BspACI CCGC 4 cut(s) 344, 413, 446, 473
BspANI GGCC 2 cut(s) 79, 184
BspCNI CTCAG 2 cut(s) 126, 430
BspLI GGNNCC 1 cut(s) 401
BspMAI CTGCAG 1 cut(s) 456
BspOI GCTAGC 1 cut(s) 48
BspPI GGATC 3 cut(s) 317, 530, 543
BsrI ACTGG 2 cut(s) 401, 478
BssMI GATC 6 cut(s) 9, 322, 366, 498, 535, 548
BssNAI GTATAC 1 cut(s) 591
Bst1107I GTATAC 1 cut(s) 591
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 46
BstDEI CTNAG 2 cut(s) 113, 417
BstF5I GGATG 2 cut(s) 256, 367
BstHHI GCGC 1 cut(s) 423
BstKTI GATC 6 cut(s) 12, 325, 369, 501, 538, 551
BstMBI GATC 6 cut(s) 9, 322, 366, 498, 535, 548
BstMCI CGRYCG 1 cut(s) 501
BstMWI GCNNNNNNNGC 5 cut(s) 233, 341, 397, 432, 454
BstNI CCWGG 1 cut(s) 81
BstSCI CCNGG 1 cut(s) 79
BstSFI CTRYAG 1 cut(s) 452
BstV1I GCAGC 7 cut(s) 435, 438, 466, 479, 498, 501, 515
BstX2I RGATCY 2 cut(s) 535, 548
BstYI RGATCY 2 cut(s) 535, 548
BstZ17I GTATAC 1 cut(s) 591
BsuRI GGCC 2 cut(s) 79, 184
BtsCI GGATG 2 cut(s) 256, 367
BtsIMutI CAGTG 1 cut(s) 12
Cac8I GCNNGC 1 cut(s) 46
CfoI GCGC 1 cut(s) 423
Cfr13I GGNCC 1 cut(s) 183
Csp6I GTAC 1 cut(s) 481
CviAII CATG 2 cut(s) 247, 327
CviQI GTAC 1 cut(s) 481
DdeI CTNAG 2 cut(s) 113, 417
DpnI GATC 6 cut(s) 11, 324, 368, 500, 537, 550
DpnII GATC 6 cut(s) 9, 322, 366, 498, 535, 548
DrdI GACNNNNNNGTC 1 cut(s) 211
DseDI GACNNNNNNGTC 1 cut(s) 211
EaeI YGGCCR 1 cut(s) 77
EciI GGCGGA 2 cut(s) 402, 462
Ecl136II GAGCTC 2 cut(s) 304, 391
Eco24I GRGCYC 2 cut(s) 306, 393
Eco53kI GAGCTC 2 cut(s) 304, 391
Eco57I CTGAAG 2 cut(s) 483, 492
EcoICRI GAGCTC 2 cut(s) 304, 391
EcoRII CCWGG 1 cut(s) 79
EcoT38I GRGCYC 2 cut(s) 306, 393
FaeI CATG 2 cut(s) 250, 330
FalI AAGNNNNNCTT 2 cut(s) 559, 591
FatI CATG 2 cut(s) 246, 326
FbaI TGATCA 1 cut(s) 9
FblI GTMKAC 1 cut(s) 590
Fnu4HI GCNGC 7 cut(s) 424, 427, 455, 468, 487, 490, 504
FokI GGATG 2 cut(s) 263, 374
FriOI GRGCYC 2 cut(s) 306, 393
Fsp4HI GCNGC 7 cut(s) 424, 427, 455, 468, 487, 490, 504
FspBI CTAG 2 cut(s) 45, 153
GlaI GCGC 1 cut(s) 422
GluI GCNGC 7 cut(s) 424, 427, 455, 468, 487, 490, 504
HaeIII GGCC 2 cut(s) 79, 184
HapII CCGG 1 cut(s) 432
HhaI GCGC 1 cut(s) 423
Hin1II CATG 2 cut(s) 250, 330
Hin6I GCGC 1 cut(s) 421
HinP1I GCGC 1 cut(s) 421
HinfI GANTC 3 cut(s) 23, 111, 295
HpaII CCGG 1 cut(s) 432
HphI GGTGA 1 cut(s) 120
Hpy166II GTNNAC 2 cut(s) 349, 591
Hpy188III TCNNGA 7 cut(s) 13, 58, 299, 359, 461, 546, 567
Hpy8I GTNNAC 2 cut(s) 349, 591
Hpy99I CGWCG 1 cut(s) 499
HpyAV CCTTC 4 cut(s) 101, 226, 235, 598
HpyCH4III ACNGT 1 cut(s) 170
HpyCH4V TGCA 1 cut(s) 454
HpyF10VI GCNNNNNNNGC 5 cut(s) 233, 341, 397, 432, 454
HpyF3I CTNAG 2 cut(s) 113, 417
Hsp92II CATG 2 cut(s) 250, 330
HspAI GCGC 1 cut(s) 421
Ksp22I TGATCA 1 cut(s) 9
Kzo9I GATC 6 cut(s) 9, 322, 366, 498, 535, 548
LmnI GCTCC 4 cut(s) 385, 405, 434, 475
Lsp1109I GCAGC 7 cut(s) 435, 438, 466, 479, 498, 501, 515
LweI GCATC 1 cut(s) 331
MaeI CTAG 2 cut(s) 45, 153
MaeIII GTNAC 3 cut(s) 142, 202, 558
MalI GATC 6 cut(s) 11, 324, 368, 500, 537, 550
MboI GATC 6 cut(s) 9, 322, 366, 498, 535, 548
MflI RGATCY 2 cut(s) 535, 548
MhlI GDGCHC 2 cut(s) 306, 393
MlyI GAGTC 2 cut(s) 17, 105
MmeI TCCRAC 1 cut(s) 431
MnlI CCTC 7 cut(s) 59, 79, 217, 384, 426, 468, 601
MseI TTAA 1 cut(s) 267
MslI CAYNNNNRTG 1 cut(s) 360
MspI CCGG 1 cut(s) 432
MspR9I CCNGG 1 cut(s) 81
MvaI CCWGG 1 cut(s) 81
MwoI GCNNNNNNNGC 5 cut(s) 233, 341, 397, 432, 454
NdeII GATC 6 cut(s) 9, 322, 366, 498, 535, 548
NheI GCTAGC 1 cut(s) 44
NlaIII CATG 2 cut(s) 250, 330
NlaIV GGNNCC 1 cut(s) 401
NmuCI GTSAC 3 cut(s) 142, 202, 558
PfeI GAWTC 1 cut(s) 295
PkrI GCNGC 7 cut(s) 425, 428, 456, 469, 488, 491, 505
Ple19I CGATCG 1 cut(s) 501
PleI GAGTC 2 cut(s) 17, 105
PpsI GAGTC 2 cut(s) 17, 105
Psp124BI GAGCTC 2 cut(s) 306, 393
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 401
PspPI GGNCC 1 cut(s) 183
PstI CTGCAG 1 cut(s) 456
PsuI RGATCY 2 cut(s) 535, 548
PvuI CGATCG 1 cut(s) 501
RsaI GTAC 1 cut(s) 482
RsaNI GTAC 1 cut(s) 481
RseI CAYNNNNRTG 1 cut(s) 360
SacI GAGCTC 2 cut(s) 306, 393
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 7 cut(s) 424, 427, 455, 468, 487, 490, 504
Sau3AI GATC 6 cut(s) 9, 322, 366, 498, 535, 548
Sau96I GGNCC 1 cut(s) 183
SchI GAGTC 2 cut(s) 17, 105
ScrFI CCNGG 1 cut(s) 81
SduI GDGCHC 2 cut(s) 306, 393
SfaNI GCATC 1 cut(s) 331
SfcI CTRYAG 1 cut(s) 452
SmiMI CAYNNNNRTG 1 cut(s) 360
SsiI CCGC 4 cut(s) 344, 413, 446, 473
SspMI CTAG 2 cut(s) 45, 153
SstI GAGCTC 2 cut(s) 306, 393
StyD4I CCNGG 1 cut(s) 79
TaaI ACNGT 1 cut(s) 170
TaqI TCGA 3 cut(s) 393, 494, 526
TatI WGTACW 1 cut(s) 480
TfiI GAWTC 1 cut(s) 295
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TscAI CASTG 1 cut(s) 12
TseFI GTSAC 3 cut(s) 142, 202, 558
TseI GCWGC 7 cut(s) 423, 426, 454, 467, 486, 489, 503
Tsp45I GTSAC 3 cut(s) 142, 202, 558
TspDTI ATGAA 2 cut(s) 120, 254
TspGWI ACGGA 1 cut(s) 392
TspRI CASTG 1 cut(s) 12
XmiI GTMKAC 1 cut(s) 590
XspI CTAG 2 cut(s) 45, 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.