Rorug05G0355400

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0008329
Physical Location & Seq
Reverse (-)
44506439 .. 44513824
7386 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0355400.1

Sequence Viewer

Length: 2814 bp
ATGGATTCATTTGAGCCCGATGGAAATGGGGCAAATGGATCAAATGGAGAGAACGGGGCAAATGGAGAAAACGGGGCAAATGGAAACGGGGCAGAACATGCATTGCCACCCCCACCCCCTGTTATCCCACCAGATGTTGTTCCATTGCTTGCTCAAGCAGATATTACACCTGAACCTTTAAAGAAGAAGATTGTGCGCCTACCAATTGCTAGGCGAGGCCTTGGAACAAAAGGGCAAAAGATTCCTCTGCTGACTAATCACTTCAAAGTTAACGTCACTAATAATAACAAAGAAGATCACTTCTTCCATTATAGTGTTTCCGTCATGTATGAAGATGGTCGTCCCCTTGACGGCAAGGGTGCTGGAAGAAGGATAATTGAGAGAGTCCACCAGACTTATATCGCTGAGTTAGGTGGAAAGGACTTTGCTTATGATGGGGAGAAGAGTCTGTTTACTGTTGGTTCGCTTCCACGCAACAAACTTGAATTTTCAGTTGTTCTGGAGGATACACCATCAAACAGAAATAATGGAAATTGTAATGCTGATGGTGATGGGAGTCCTAATGAAAGTGATCGGAAGAGGCTACGGCGTCCAGGTCGTTCCAAAACGTTCAATGTTGAAATTAGCTATGCTGCAAAAATTCCCATGAAGGCAATTGGAGATGCTCTACGCGGTCAGGAGTCAGAAAACTCCCAAGAGGCTCTGAGAGTGCTGGATATCATATTAAGGCAACATGCATCTAAGCAAGGATGCCTCCTGGTTCGTCAATCTTTCTTCCATAATGATCCAAAAAGTTTTGTTGATGTTGGAGGAGGTGTTCTAGGGTGCAGAGGATTCCATTCAAGCTTCAGAACCACCCAGGGTGGCCTGTCGTTGAACATTGATGTATCAACTACCATGATAATACAGCCTGGACCAGTTGTTGATTTTCTAATTTCCAACCAGAATGTTAGAGATCCCTTTTCACTTGACTGGACAAAGGCTAAGAGAACTCTGAAGAATTTGAGGGTTAAAACGAGCCCAACCAATCTGGAATACAAGATAACTGGATTGAGCGAGCGACCATGCAAAGAGCAAATGTTTACCTTGAGAAACAAAAATGCAAAGGACGGCGAGGATGGAGAAATTGAAGTGACTGTTTATGACTATTTTGTTAATCATCGCAATATACAGTTGCGTTATTCTGGCGATCTGCCCTGCATTAATGTTGGGAAGCCAAAGCGTCCTACTTACATTCCCCTTGAGCTATGTGAATTGGTTTCGTTGCAACGGTATACAAAAGCACTTTCAACTCTTCAAAGATCTTCACTGGTGGAGAAGTCAAGGCAAAAGCCACAGGAGAGGATGAGCATTTTGTCTAATGCTTTGAAAATCAACAATTATGATGCTGAACCTATGCTACGTGCATGTGGTGTATCAATTGGTAATAGTTTCACTCAAGTGGATGGCCGTGTTTTGCCTGCTCCAAAGTTAAAAGTTGGCAATGGGGATGATTTCTTCCCCAGAAATGGGCGGTGGAATTTCAACAATAAGAAACTCGTGAAGCCTACTAAGATAGAACGATGGGTTGTTGTTAACTTCTCCGCACGCTGTGATCTAAAAGCCCTTGTCCGTGATTTGATTAAATGTGGAGATATGAAGGGAATTGCCATAGACCCTCCATTTGATGTTTTTGAAGAGAATCCACAGTCTCGACGTGCCCCACCTCTGGTTAGGGTTGAGAGAATGTTTGAGGATATTCAATCCAAACTTCCTGGACAACCACAGTTCATTCTCTGTTTGCTTCCGGAGAGGAAAAATTCTGCTCTATATGGCCCATGGAAGCGGAAGAATCTGGCTGAGTATGGTATTGTCACACAGTGCATAGCTCCTACCAGGGTCAATGACCAATATCTTACAAATGTTCTGCTAAAAATTAATGCTAAGCTTGGTGGATTAAATTCCTTGTTGGCTGTTGAGTTTTCTCCTTCCATTCCTGTGGTTTCCAAGGCTCCTACCATCATCCTAGGGATGGATGTGTCGCATGGCTCTCCTGGCCAGTCGGACATACCATCAATAGCCGCGGTAGTCAGCTCGAGGCACTGGCCACTCATTTCCCGCTATAGGGCATCTGTTCGAACTCAGTCTCCAAAGGTCGAAATGATTGATTCACTGTTCAAGCGTGTTTCTGATACAGAAGATGACGGCATTATGAGAGAGCTGCTTTTGGACTTCTATACAAGTTCAAATAAGCGTAAACCGGATCAGATAATCATATTCAGGGATGGTGTCAGCGAGTCTCAATTCAACCAAGTCTTGAACATTGAACTGGATCAAATCATTGAGGCGTGCAAGTTCCTTGACGAGAGTTGGTGCCCAAAATTTGTGGTGATTATTGCTCAGAAAAACCACCATACAAAATTCTTTCAGCCTCAGTCACCTGATAATGTTCCACCTGGGACCATTATTGACAACAGAATTTGTCATCCAAAGAACAATGATTTTTATCTCTGTGCACAGGCCGGAATGATAGGTACCACGAGACCTACTCATTATCATGTTCTGTTGGACGACGTTGGGTTTTCAGCTGATGATCTGCAGGAACTAGTGCATTCTCTATCCTATGTGTACCAGAGAAGTACCACTGCCATTTCTGTCGTTGCACCGATTTGCTATGCTCATCTCGCTGCCACTCAAATGAGTCAGTTTGTGAAATTTGAAGATGCATCTGAGACTTCCTCAAGCCATGGTGGGCTGACCTCTGCTGGAGCAGTGCCAGTCCCGCAGCTTCCCAGGCTGAAGGAGAACGTGGCCAATTCCATGTTTTTCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006417 GO:0006996 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010494 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016043 GO:0017148 GO:0019219 GO:0019222 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032991 GO:0034063 GO:0034248 GO:0034249 GO:0034250 GO:0034622 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043487 GO:0043488 GO:0043489 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045182 GO:0045727 GO:0045934 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070181 GO:0070925 GO:0071826 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

937

Amino Acids

104.21

Weight (kDa)

8.88

Isoelectric Point (pI)

44.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArgoN PF16486 79 - 242 1.5e-29 N-terminal domain of argonaute
ArgoL1 PF08699 254 - 303 1.3e-18 Argonaute linker 1 domain
PAZ PF02170 308 - 437 5.7e-31 PAZ domain
ArgoL2 PF16488 447 - 492 4.2e-13 Argonaute linker 2 domain
Piwi PF02171 590 - 898 2e-105 Piwi domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 2513
AccB1I GGYRCC 2 cut(s) 2352, 2513
AccI GTMKAC 1 cut(s) 1274
AccII CGCG 2 cut(s) 672, 2063
AccIII TCCGGA 1 cut(s) 1786
AciI CCGC 8 cut(s) 672, 1513, 1584, 1825, 2061, 2063, 2098, 2762
AclI AACGTT 1 cut(s) 608
AclWI GGATC 5 cut(s) 46, 779, 950, 2250, 2319
AcoI YGGCCR 4 cut(s) 1447, 2035, 2084, 2790
AcuI CTGAAG 3 cut(s) 832, 1016, 2798
AcyI GRCGYC 1 cut(s) 589
AdeI CACNNNGTG 2 cut(s) 1592, 1860
AfaI GTAC 3 cut(s) 2515, 2609, 2620
AfiI CCNNNNNNNGG 7 cut(s) 350, 1508, 1509, 1708, 2011, 2103, 2104
AhlI ACTAGT 1 cut(s) 2584
AjiI CACGTC 1 cut(s) 1697
AjnI CCWGG 9 cut(s) 592, 756, 858, 910, 1753, 1874, 2032, 2434, 2771
AleI CACNNNNGTG 1 cut(s) 1439
AloI GAACNNNNNNTCC 4 cut(s) 801, 833, 2110, 2142
AluBI AGCT 9 cut(s) 627, 846, 1246, 1868, 1927, 2073, 2200, 2567, 2767
AluI AGCT 9 cut(s) 627, 846, 1246, 1868, 1927, 2073, 2200, 2567, 2767
Alw21I GWGCWC 1 cut(s) 2497
Alw26I GTCTC 5 cut(s) 1695, 2130, 2283, 2515, 2705
Alw44I GTGCAC 1 cut(s) 2493
AlwI GGATC 5 cut(s) 46, 779, 950, 2250, 2319
Ama87I CYCGRG 1 cut(s) 2074
Aor13HI TCCGGA 1 cut(s) 1786
AoxI GGCC 8 cut(s) 217, 865, 1447, 1813, 2035, 2084, 2499, 2790
ApaLI GTGCAC 1 cut(s) 2493
ApeKI GCWGC 4 cut(s) 632, 2200, 2666, 2764
ArsI GACNNNNNNTTYG 4 cut(s) 258, 290, 1646, 1678
AseI ATTAAT 2 cut(s) 1203, 1917
Asp718I GGTACC 1 cut(s) 2513
AspA2I CCTAGG 1 cut(s) 2005
AspLEI GCGC 1 cut(s) 198
AspS9I GGNCC 3 cut(s) 914, 1814, 2439
AsuHPI GGTGA 3 cut(s) 560, 2380, 2409
AsuII TTCGAA 1 cut(s) 2116
AvaI CYCGRG 1 cut(s) 2074
AvaII GGWCC 2 cut(s) 914, 2439
AvrII CCTAGG 1 cut(s) 2005
BaeGI GKGCMC 3 cut(s) 1702, 2357, 2497
BalI TGGCCA 3 cut(s) 2037, 2086, 2792
BanI GGYRCC 2 cut(s) 2352, 2513
BanII GRGCYC 2 cut(s) 18, 1022
BauI CACGAG 2 cut(s) 1538, 2518
Bbv12I GWGCWC 1 cut(s) 2497
BbvI GCAGC 4 cut(s) 619, 2187, 2653, 2776
BceAI ACGGC 5 cut(s) 367, 602, 1126, 1434, 2200
BciT130I CCWGG 9 cut(s) 594, 758, 860, 912, 1755, 1876, 2034, 2436, 2773
BciVI GTATCC 1 cut(s) 499
BcoDI GTCTC 5 cut(s) 1695, 2130, 2283, 2515, 2705
BcuI ACTAGT 1 cut(s) 2584
BfaI CTAG 4 cut(s) 210, 821, 2006, 2585
BfmI CTRYAG 2 cut(s) 2101, 2576
BfuI GTATCC 1 cut(s) 499
BglII AGATCT 1 cut(s) 1301
BisI GCNGC 5 cut(s) 633, 2061, 2201, 2667, 2765
BlnI CCTAGG 1 cut(s) 2005
BlpI GCTNAGC 1 cut(s) 1923
BlsI GCNGC 5 cut(s) 634, 2062, 2202, 2668, 2766
Bme1390I CCNGG 9 cut(s) 594, 758, 860, 912, 1755, 1876, 2034, 2436, 2773
Bme18I GGWCC 2 cut(s) 914, 2439
BmeT110I CYCGRG 1 cut(s) 2074
BmgBI CACGTC 1 cut(s) 1697
BmgT120I GGNCC 3 cut(s) 914, 1814, 2439
BmiI GGNNCC 4 cut(s) 1992, 2354, 2440, 2515
BmrFI CCNGG 9 cut(s) 594, 758, 860, 912, 1755, 1876, 2034, 2436, 2773
BmsI GCATC 7 cut(s) 652, 740, 746, 1375, 2117, 2692, 2714
BplI GAGNNNNNCTC 4 cut(s) 2512, 2544, 2702, 2734
BpmI CTGGAG 2 cut(s) 521, 2766
Bpu1102I GCTNAGC 1 cut(s) 1923
Bpu14I TTCGAA 1 cut(s) 2116
BpuEI CTTGAG 5 cut(s) 138, 1108, 1262, 1422, 2704
BsaAI YACGTR 1 cut(s) 1403
BsaBI GATNNNNATC 1 cut(s) 2484
BsaHI GRCGYC 1 cut(s) 589
BsaI GGTCTC 1 cut(s) 2515
BsaWI WCCGGW 2 cut(s) 1786, 2239
BsaXI ACNNNNNCTCC 4 cut(s) 801, 831, 2110, 2140
Bsc4I CCNNNNNNNGG 7 cut(s) 350, 1508, 1509, 1708, 2011, 2103, 2104
Bse1I ACTGG 8 cut(s) 917, 977, 1051, 1314, 2038, 2087, 2313, 2756
Bse3DI GCAATG 3 cut(s) 101, 143, 1489
Bse8I GATNNNNATC 1 cut(s) 2484
BseAI TCCGGA 1 cut(s) 1786
BseBI CCWGG 9 cut(s) 594, 758, 860, 912, 1755, 1876, 2034, 2436, 2773
BseJI GATNNNNATC 1 cut(s) 2484
BseLI CCNNNNNNNGG 7 cut(s) 350, 1508, 1509, 1708, 2011, 2103, 2104
BseMI GCAATG 3 cut(s) 101, 143, 1489
BseMII CTCAG 7 cut(s) 396, 695, 1830, 2135, 2393, 2426, 2700
BseNI ACTGG 8 cut(s) 917, 977, 1051, 1314, 2038, 2087, 2313, 2756
BseRI GAGGAG 1 cut(s) 825
BseSI GKGCMC 3 cut(s) 1702, 2357, 2497
BseXI GCAGC 4 cut(s) 619, 2187, 2653, 2776
BsgI GTGCAG 1 cut(s) 847
Bsh1236I CGCG 2 cut(s) 672, 2063
BshFI GGCC 8 cut(s) 219, 867, 1449, 1815, 2037, 2086, 2501, 2792
BshNI GGYRCC 2 cut(s) 2352, 2513
BsiHKAI GWGCWC 1 cut(s) 2497
BsiHKCI CYCGRG 1 cut(s) 2074
BsiSI CCGG 3 cut(s) 1787, 2240, 2502
BslFI GGGAC 3 cut(s) 327, 2452, 2744
BslI CCNNNNNNNGG 7 cut(s) 350, 1508, 1509, 1708, 2011, 2103, 2104
BsmAI GTCTC 5 cut(s) 1695, 2130, 2283, 2515, 2705
BsmFI GGGAC 3 cut(s) 327, 2452, 2744
BsmI GAATGC 1 cut(s) 2590
BsnI GGCC 8 cut(s) 219, 867, 1449, 1815, 2037, 2086, 2501, 2792
Bso31I GGTCTC 1 cut(s) 2515
BsoBI CYCGRG 1 cut(s) 2074
Bsp119I TTCGAA 1 cut(s) 2116
Bsp1286I GDGCHC 5 cut(s) 18, 1022, 1702, 2357, 2497
Bsp13I TCCGGA 1 cut(s) 1786
Bsp1720I GCTNAGC 1 cut(s) 1923
Bsp19I CCATGG 2 cut(s) 1817, 2725
BspACI CCGC 8 cut(s) 672, 1513, 1584, 1825, 2061, 2063, 2098, 2762
BspANI GGCC 8 cut(s) 219, 867, 1449, 1815, 2037, 2086, 2501, 2792
BspCNI CTCAG 7 cut(s) 397, 696, 1831, 2134, 2392, 2425, 2701
BspEI TCCGGA 1 cut(s) 1786
BspFNI CGCG 2 cut(s) 672, 2063
BspLI GGNNCC 4 cut(s) 1992, 2354, 2440, 2515
BspMAI CTGCAG 1 cut(s) 2580
BspPI GGATC 5 cut(s) 46, 779, 950, 2250, 2319
BspT104I TTCGAA 1 cut(s) 2116
BspT107I GGYRCC 2 cut(s) 2352, 2513
BspTNI GGTCTC 1 cut(s) 2515
BsrDI GCAATG 3 cut(s) 101, 143, 1489
BsrI ACTGG 8 cut(s) 917, 977, 1051, 1314, 2038, 2087, 2313, 2756
BssNAI GTATAC 1 cut(s) 1275
BssNI GRCGYC 1 cut(s) 589
BssSI CACGAG 2 cut(s) 1538, 2518
BssT1I CCWWGG 5 cut(s) 220, 1817, 1986, 2005, 2725
Bst1107I GTATAC 1 cut(s) 1275
Bst2BI CACGAG 2 cut(s) 1538, 2518
Bst2UI CCWGG 9 cut(s) 594, 758, 860, 912, 1755, 1876, 2034, 2436, 2773
Bst4CI ACNGT 8 cut(s) 457, 1138, 1173, 1272, 1689, 1767, 1860, 2154
Bst6I CTCTTC 4 cut(s) 437, 572, 1299, 1671
BstACI GRCGYC 1 cut(s) 589
BstAPI GCANNNNNTGC 1 cut(s) 98
BstBAI YACGTR 1 cut(s) 1403
BstBI TTCGAA 1 cut(s) 2116
BstC8I GCNNGC 5 cut(s) 150, 1058, 1461, 1588, 2329
BstDSI CCRYGG 3 cut(s) 1817, 2061, 2725
BstFNI CGCG 2 cut(s) 672, 2063
BstHHI GCGC 1 cut(s) 198
BstMAI GTCTC 5 cut(s) 1695, 2130, 2283, 2515, 2705
BstMWI GCNNNNNNNGC 5 cut(s) 98, 2034, 2663, 2761, 2773
BstNI CCWGG 9 cut(s) 594, 758, 860, 912, 1755, 1876, 2034, 2436, 2773
BstNSI RCATGY 3 cut(s) 101, 737, 1410
BstSCI CCNGG 9 cut(s) 592, 756, 858, 910, 1753, 1874, 2032, 2434, 2771
BstSFI CTRYAG 2 cut(s) 2101, 2576
BstSLI GKGCMC 3 cut(s) 1702, 2357, 2497
BstUI CGCG 2 cut(s) 672, 2063
BstV1I GCAGC 4 cut(s) 619, 2187, 2653, 2776
BstX2I RGATCY 2 cut(s) 955, 1301
BstXI CCANNNNNNTGG 1 cut(s) 1978
BstYI RGATCY 2 cut(s) 955, 1301
BstZ17I GTATAC 1 cut(s) 1275
BsuI GTATCC 1 cut(s) 499
BsuRI GGCC 8 cut(s) 219, 867, 1449, 1815, 2037, 2086, 2501, 2792
BtgI CCRYGG 3 cut(s) 1817, 2061, 2725
BtgZI GCGATG 1 cut(s) 1145
BtrI CACGTC 1 cut(s) 1697
BtsI GCAGTG 2 cut(s) 2622, 2757
BtsIMutI CAGTG 6 cut(s) 1307, 1865, 2080, 2150, 2622, 2757
Cac8I GCNNGC 5 cut(s) 150, 1058, 1461, 1588, 2329
CfoI GCGC 1 cut(s) 198
Cfr13I GGNCC 3 cut(s) 914, 1814, 2439
Cfr42I CCGCGG 1 cut(s) 2064
CseI GACGC 2 cut(s) 578, 1211
Csp6I GTAC 3 cut(s) 2514, 2608, 2619
CspCI CAANNNNNGTGG 2 cut(s) 2346, 2381
CviQI GTAC 3 cut(s) 2514, 2608, 2619
DraI TTTAAA 1 cut(s) 180
DraIII CACNNNGTG 2 cut(s) 1592, 1860
EaeI YGGCCR 4 cut(s) 1447, 2035, 2084, 2790
Eam1104I CTCTTC 4 cut(s) 437, 572, 1299, 1671
EarI CTCTTC 4 cut(s) 437, 572, 1299, 1671
Eco130I CCWWGG 5 cut(s) 220, 1817, 1986, 2005, 2725
Eco147I AGGCCT 1 cut(s) 219
Eco24I GRGCYC 2 cut(s) 18, 1022
Eco31I GGTCTC 1 cut(s) 2515
Eco32I GATATC 1 cut(s) 718
Eco47I GGWCC 2 cut(s) 914, 2439
Eco57I CTGAAG 3 cut(s) 832, 1016, 2798
Eco88I CYCGRG 1 cut(s) 2074
EcoRII CCWGG 9 cut(s) 592, 756, 858, 910, 1753, 1874, 2032, 2434, 2771
EcoRV GATATC 1 cut(s) 718
EcoT14I CCWWGG 5 cut(s) 220, 1817, 1986, 2005, 2725
EcoT22I ATGCAT 3 cut(s) 103, 739, 2707
EcoT38I GRGCYC 2 cut(s) 18, 1022
ErhI CCWWGG 5 cut(s) 220, 1817, 1986, 2005, 2725
FaqI GGGAC 3 cut(s) 327, 2452, 2744
FauI CCCGC 2 cut(s) 2105, 2769
FblI GTMKAC 1 cut(s) 1274
Fnu4HI GCNGC 5 cut(s) 633, 2061, 2201, 2667, 2765
FriOI GRGCYC 2 cut(s) 18, 1022
Fsp4HI GCNGC 5 cut(s) 633, 2061, 2201, 2667, 2765
FspBI CTAG 4 cut(s) 210, 821, 2006, 2585
GlaI GCGC 1 cut(s) 197
GluI GCNGC 5 cut(s) 633, 2061, 2201, 2667, 2765
GsuI CTGGAG 2 cut(s) 521, 2766
HaeIII GGCC 8 cut(s) 219, 867, 1449, 1815, 2037, 2086, 2501, 2792
HapII CCGG 3 cut(s) 1787, 2240, 2502
HgaI GACGC 2 cut(s) 578, 1211
HhaI GCGC 1 cut(s) 198
Hin1I GRCGYC 1 cut(s) 589
Hin6I GCGC 1 cut(s) 196
HinP1I GCGC 1 cut(s) 196
HincII GTYRAC 2 cut(s) 271, 1576
HindII GTYRAC 2 cut(s) 271, 1576
HindIII AAGCTT 2 cut(s) 844, 1925
HpaI GTTAAC 2 cut(s) 271, 1576
HpaII CCGG 3 cut(s) 1787, 2240, 2502
HphI GGTGA 3 cut(s) 560, 2380, 2409
Hpy166II GTNNAC 9 cut(s) 271, 388, 453, 1083, 1275, 1576, 2237, 2495, 2608
Hpy188III TCNNGA 7 cut(s) 500, 677, 1031, 1540, 1692, 1787, 2296
Hpy8I GTNNAC 9 cut(s) 271, 388, 453, 1083, 1275, 1576, 2237, 2495, 2608
Hpy99I CGWCG 2 cut(s) 1698, 2555
HpyAV CCTTC 5 cut(s) 363, 643, 1633, 1977, 2773
HpyCH4III ACNGT 8 cut(s) 457, 1138, 1173, 1272, 1689, 1767, 1860, 2154
HpyCH4IV ACGT 6 cut(s) 273, 608, 1402, 1696, 2553, 2787
HpyF10VI GCNNNNNNNGC 5 cut(s) 98, 2034, 2663, 2761, 2773
HpySE526I ACGT 6 cut(s) 273, 608, 1402, 1696, 2553, 2787
Hsp92I GRCGYC 1 cut(s) 589
HspAI GCGC 1 cut(s) 196
Kpn2I TCCGGA 1 cut(s) 1786
KpnI GGTACC 1 cut(s) 2517
KspAI GTTAAC 2 cut(s) 271, 1576
KspI CCGCGG 1 cut(s) 2064
LmnI GCTCC 4 cut(s) 1468, 1873, 1996, 2747
Lsp1109I GCAGC 4 cut(s) 619, 2187, 2653, 2776
LweI GCATC 7 cut(s) 652, 740, 746, 1375, 2117, 2692, 2714
MaeI CTAG 4 cut(s) 210, 821, 2006, 2585
MaeII ACGT 6 cut(s) 273, 608, 1402, 1696, 2553, 2787
MaeIII GTNAC 4 cut(s) 274, 1132, 1852, 2415
MfeI CAATTG 3 cut(s) 204, 654, 1419
MflI RGATCY 2 cut(s) 955, 1301
MhlI GDGCHC 5 cut(s) 18, 1022, 1702, 2357, 2497
MlsI TGGCCA 3 cut(s) 2037, 2086, 2792
MluNI TGGCCA 3 cut(s) 2037, 2086, 2792
MlyI GAGTC 6 cut(s) 393, 454, 565, 689, 2285, 2689
MmeI TCCRAC 4 cut(s) 787, 963, 2022, 2526
Mox20I TGGCCA 3 cut(s) 2037, 2086, 2792
Mph1103I ATGCAT 3 cut(s) 103, 739, 2707
MroI TCCGGA 1 cut(s) 1786
MscI TGGCCA 3 cut(s) 2037, 2086, 2792
MslI CAYNNNNRTG 5 cut(s) 312, 1439, 1976, 2535, 2675
Msp20I TGGCCA 3 cut(s) 2037, 2086, 2792
MspA1I CMGCKG 2 cut(s) 2063, 2567
MspI CCGG 3 cut(s) 1787, 2240, 2502
MspR9I CCNGG 9 cut(s) 594, 758, 860, 912, 1755, 1876, 2034, 2436, 2773
MunI CAATTG 3 cut(s) 204, 654, 1419
Mva1269I GAATGC 1 cut(s) 2590
MvaI CCWGG 9 cut(s) 594, 758, 860, 912, 1755, 1876, 2034, 2436, 2773
MvnI CGCG 2 cut(s) 672, 2063
MwoI GCNNNNNNNGC 5 cut(s) 98, 2034, 2663, 2761, 2773
NcoI CCATGG 2 cut(s) 1817, 2725
NlaIV GGNNCC 4 cut(s) 1992, 2354, 2440, 2515
NmuCI GTSAC 4 cut(s) 274, 1132, 1852, 2415
NsiI ATGCAT 3 cut(s) 103, 739, 2707
NspI RCATGY 3 cut(s) 101, 737, 1410
NspV TTCGAA 1 cut(s) 2116
OliI CACNNNNGTG 1 cut(s) 1439
PaeR7I CTCGAG 1 cut(s) 2074
PasI CCCWGGG 1 cut(s) 859
PceI AGGCCT 1 cut(s) 219
PctI GAATGC 1 cut(s) 2590
PfeI GAWTC 6 cut(s) 5, 241, 834, 1681, 1831, 2147
PfoI TCCNGGA 1 cut(s) 1753
PkrI GCNGC 5 cut(s) 634, 2062, 2202, 2668, 2766
PleI GAGTC 6 cut(s) 392, 453, 564, 688, 2284, 2688
PpsI GAGTC 6 cut(s) 392, 453, 564, 688, 2284, 2688
Ppu21I YACGTR 1 cut(s) 1403
PshBI ATTAAT 2 cut(s) 1203, 1917
Psp1406I AACGTT 1 cut(s) 608
Psp6I CCWGG 9 cut(s) 592, 756, 858, 910, 1753, 1874, 2032, 2434, 2771
PspGI CCWGG 9 cut(s) 592, 756, 858, 910, 1753, 1874, 2032, 2434, 2771
PspN4I GGNNCC 4 cut(s) 1992, 2354, 2440, 2515
PspPI GGNCC 3 cut(s) 914, 1814, 2439
PspXI VCTCGAGB 1 cut(s) 2074
PsrI GAACNNNNNNTAC 2 cut(s) 1383, 1415
PstI CTGCAG 1 cut(s) 2580
PsuI RGATCY 2 cut(s) 955, 1301
PvuII CAGCTG 1 cut(s) 2567
RsaI GTAC 3 cut(s) 2515, 2609, 2620
RsaNI GTAC 3 cut(s) 2514, 2608, 2619
RseI CAYNNNNRTG 5 cut(s) 312, 1439, 1976, 2535, 2675
SacII CCGCGG 1 cut(s) 2064
SatI GCNGC 5 cut(s) 633, 2061, 2201, 2667, 2765
Sau96I GGNCC 3 cut(s) 914, 1814, 2439
SchI GAGTC 6 cut(s) 393, 454, 565, 689, 2285, 2689
ScrFI CCNGG 9 cut(s) 594, 758, 860, 912, 1755, 1876, 2034, 2436, 2773
SduI GDGCHC 5 cut(s) 18, 1022, 1702, 2357, 2497
SfaNI GCATC 7 cut(s) 652, 740, 746, 1375, 2117, 2692, 2714
SfcI CTRYAG 2 cut(s) 2101, 2576
Sfr274I CTCGAG 1 cut(s) 2074
Sfr303I CCGCGG 1 cut(s) 2064
SfuI TTCGAA 1 cut(s) 2116
SgrBI CCGCGG 1 cut(s) 2064
SinI GGWCC 2 cut(s) 914, 2439
SlaI CTCGAG 1 cut(s) 2074
SmiMI CAYNNNNRTG 5 cut(s) 312, 1439, 1976, 2535, 2675
SmlI CTYRAG 6 cut(s) 153, 1087, 1241, 1437, 2074, 2719
SmoI CTYRAG 6 cut(s) 153, 1087, 1241, 1437, 2074, 2719
SpeI ACTAGT 1 cut(s) 2584
SseBI AGGCCT 1 cut(s) 219
SsiI CCGC 8 cut(s) 672, 1513, 1584, 1825, 2061, 2063, 2098, 2762
SspMI CTAG 4 cut(s) 210, 821, 2006, 2585
StuI AGGCCT 1 cut(s) 219
StyD4I CCNGG 9 cut(s) 592, 756, 858, 910, 1753, 1874, 2032, 2434, 2771
StyI CCWWGG 5 cut(s) 220, 1817, 1986, 2005, 2725
TaaI ACNGT 8 cut(s) 457, 1138, 1173, 1272, 1689, 1767, 1860, 2154
TaiI ACGT 6 cut(s) 276, 611, 1405, 1699, 2556, 2790
TaqI TCGA 4 cut(s) 1693, 2075, 2116, 2136
TauI GCSGC 1 cut(s) 2063
TfiI GAWTC 6 cut(s) 5, 241, 834, 1681, 1831, 2147
TscAI CASTG 6 cut(s) 1314, 1865, 2087, 2157, 2629, 2757
TseFI GTSAC 4 cut(s) 274, 1132, 1852, 2415
TseI GCWGC 4 cut(s) 632, 2200, 2666, 2764
Tsp45I GTSAC 4 cut(s) 274, 1132, 1852, 2415
TspDTI ATGAA 5 cut(s) 345, 579, 662, 1652, 1759
TspGWI ACGGA 2 cut(s) 310, 1601
TspRI CASTG 6 cut(s) 1314, 1865, 2087, 2157, 2629, 2757
VneI GTGCAC 1 cut(s) 2493
VpaK11BI GGWCC 2 cut(s) 914, 2439
VspI ATTAAT 2 cut(s) 1203, 1917
XceI RCATGY 3 cut(s) 101, 737, 1410
XhoI CTCGAG 1 cut(s) 2074
XmaJI CCTAGG 1 cut(s) 2005
XmiI GTMKAC 1 cut(s) 1274
XspI CTAG 4 cut(s) 210, 821, 2006, 2585
Zsp2I ATGCAT 3 cut(s) 103, 739, 2707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.