Rroxscaffold_1G00017480

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0008329
Physical Location & Seq
Reverse (-)
21548345 .. 21549766
1422 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00017480.1

Sequence Viewer

Length: 285 bp
ATGGCTAAAAGATTAACCTCGAAGCTCTTCGTCAGCAGATTATCATCATACACCACTAATGAAGGACTCAGGCAGATGTTTTCACCTTTTGGAGATGTCACAGAAGCTAGGTTAGTTATAGACCGTGAAACTCAAAGGCCCAAAGGTTTTGGTTTTGTGACATACAAGTCTGAGGTTGAGGCACAGAAGGCTATGAAGGTCATGGATGGCAGGATGGTTAATGGAAGGCTGCTTTTTGTTGAAGTTGCAGAGACTGAAAGGCATCCAGAAAATATCAGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006417 GO:0006996 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010468 GO:0010494 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016043 GO:0017148 GO:0019219 GO:0019222 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031330 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032991 GO:0034063 GO:0034248 GO:0034249 GO:0034250 GO:0034622 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043487 GO:0043488 GO:0043489 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045182 GO:0045727 GO:0045934 GO:0048255 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0061013 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070181 GO:0070925 GO:0071826 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902369 GO:1902373 GO:1903311 GO:1903312 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

94

Amino Acids

10.73

Weight (kDa)

9.52

Isoelectric Point (pI)

37.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 9 - 77 2.8e-23 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 166
AgsI TTSAA 1 cut(s) 242
AluBI AGCT 3 cut(s) 25, 107, 279
AluI AGCT 3 cut(s) 25, 107, 279
Alw26I GTCTC 1 cut(s) 245
AlwNI CAGNNNCTG 1 cut(s) 254
AoxI GGCC 1 cut(s) 137
ApeKI GCWGC 1 cut(s) 229
Asp700I GAANNNNTTC 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 138
AsuHPI GGTGA 1 cut(s) 75
BbvI GCAGC 1 cut(s) 216
BccI CCATC 2 cut(s) 200, 208
BcoDI GTCTC 1 cut(s) 245
BfaI CTAG 1 cut(s) 108
BisI GCNGC 1 cut(s) 230
BlsI GCNGC 1 cut(s) 231
BmgT120I GGNCC 1 cut(s) 138
BmsI GCATC 1 cut(s) 271
BsaBI GATNNNNATC 1 cut(s) 43
Bse8I GATNNNNATC 1 cut(s) 43
BseGI GGATG 3 cut(s) 211, 219, 262
BseJI GATNNNNATC 1 cut(s) 43
BseMII CTCAG 2 cut(s) 82, 162
BseXI GCAGC 1 cut(s) 216
BshFI GGCC 1 cut(s) 139
BsmAI GTCTC 1 cut(s) 245
BsnI GGCC 1 cut(s) 139
BspANI GGCC 1 cut(s) 139
BspCNI CTCAG 2 cut(s) 81, 163
BspQI GCTCTTC 1 cut(s) 32
Bst4CI ACNGT 1 cut(s) 125
Bst6I CTCTTC 1 cut(s) 32
BstDEI CTNAG 2 cut(s) 68, 171
BstF5I GGATG 3 cut(s) 211, 219, 262
BstMAI GTCTC 1 cut(s) 245
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstV1I GCAGC 1 cut(s) 216
BsuRI GGCC 1 cut(s) 139
BtsCI GGATG 3 cut(s) 211, 219, 262
CaiI CAGNNNCTG 1 cut(s) 254
Cfr13I GGNCC 1 cut(s) 138
CviAII CATG 1 cut(s) 202
CviJI RGCY 7 cut(s) 5, 25, 107, 139, 191, 229, 279
CviKI_1 RGCY 7 cut(s) 5, 25, 107, 139, 191, 229, 279
DdeI CTNAG 2 cut(s) 68, 171
DrdI GACNNNNNNGTC 1 cut(s) 166
DseDI GACNNNNNNGTC 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
FaeI CATG 1 cut(s) 205
FaiI YATR 5 cut(s) 49, 119, 163, 194, 203
FatI CATG 1 cut(s) 201
Fnu4HI GCNGC 1 cut(s) 230
FokI GGATG 3 cut(s) 218, 226, 249
Fsp4HI GCNGC 1 cut(s) 230
FspBI CTAG 1 cut(s) 108
GluI GCNGC 1 cut(s) 230
HaeIII GGCC 1 cut(s) 139
Hin1II CATG 1 cut(s) 205
HinfI GANTC 1 cut(s) 66
HphI GGTGA 1 cut(s) 75
Hpy188I TCNGA 1 cut(s) 172
Hpy188III TCNNGA 2 cut(s) 266, 282
HpyAV CCTTC 4 cut(s) 56, 181, 190, 219
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4V TGCA 1 cut(s) 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
HpyF3I CTNAG 2 cut(s) 68, 171
Hsp92II CATG 1 cut(s) 205
LguI GCTCTTC 1 cut(s) 32
LpnPI CCDG 3 cut(s) 55, 196, 279
Lsp1109I GCAGC 1 cut(s) 216
LweI GCATC 1 cut(s) 271
MaeI CTAG 1 cut(s) 108
MaeIII GTNAC 2 cut(s) 97, 157
MboII GAAGA 1 cut(s) 19
MlyI GAGTC 1 cut(s) 60
MnlI CCTC 3 cut(s) 28, 166, 172
MroXI GAANNNNTTC 1 cut(s) 26
MseI TTAA 2 cut(s) 14, 219
MwoI GCNNNNNNNGC 1 cut(s) 188
NlaIII CATG 1 cut(s) 205
NmuCI GTSAC 2 cut(s) 97, 157
PciSI GCTCTTC 1 cut(s) 32
PdmI GAANNNNTTC 1 cut(s) 26
PkrI GCNGC 1 cut(s) 231
PleI GAGTC 1 cut(s) 60
PpsI GAGTC 1 cut(s) 60
PspPI GGNCC 1 cut(s) 138
PstNI CAGNNNCTG 1 cut(s) 254
SapI GCTCTTC 1 cut(s) 32
SaqAI TTAA 2 cut(s) 14, 219
SatI GCNGC 1 cut(s) 230
Sau96I GGNCC 1 cut(s) 138
SchI GAGTC 1 cut(s) 60
SetI ASST 9 cut(s) 20, 27, 88, 109, 113, 148, 177, 201, 281
SfaNI GCATC 1 cut(s) 271
SgeI CNNG 8 cut(s) 31, 82, 120, 137, 178, 214, 223, 278
SspMI CTAG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 125
TaqI TCGA 1 cut(s) 20
Tru1I TTAA 2 cut(s) 14, 219
Tru9I TTAA 2 cut(s) 14, 219
TseFI GTSAC 2 cut(s) 97, 157
TseI GCWGC 1 cut(s) 229
Tsp45I GTSAC 2 cut(s) 97, 157
TspDTI ATGAA 2 cut(s) 75, 209
XmnI GAANNNNTTC 1 cut(s) 26
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.