AT3G47350

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0008986
Physical Location & Seq
Forward (+)
17446818 .. 17450742
3925 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G47350.3

Sequence Viewer

Length: 927 bp
ATGGATATGCTTCACACTATTCTCAATTTTCTTCTTCCTCCTCTTACTATCAGTTTTCTCGTCCTATTTTACCCATTTTATCTTTTTACCAAACTTATGAGTTGTCTTAAGCACCTTCACTTTGAAAACGTTACTGGGAAAGTAGTTCTAATCACCGGAGCTTCCTCCGGCATCGGAGAGCATGTGGCATACGAGTACGCAAAGAAAGGAGCAAAATTAGCTCTTGTTGCTCGAAGAAAGGATCGTCTAGAGATTGTAGCAGAAACATCACGTCAATTAGGATCTGGCGATGTCATCATCATACCTGGTGATGTTTCTAATGTTGAGGACTGCAAGAAGTTCATCGACGAAACGATTCATCATTTCGGAAAACTGGACCACCTGATCAACAATGCTGGAGTACCTCAAACTGTTATATTCGAAGATTTCACACAAATTCAAGACGCTAATTCTATAATGGATATCAACTTTTGGGGCTCAACGTACATCACTTATTTTGCTATTCCTCATCTTCGAAAAAGCAAAGGAAAAATTGTTGTGATTTCTTCTGCTACGGCAATTATACCTTTGCAAGCGGCAAGCGTCTATTCAGCAAGCAAAGCAGCTTTAGTAAAATTCTTTGAAACATTAAGAGTTGAGATCAGTCCCGATATCAAAATAACAATCGCTCTTCCCGGATTTATATCTACGGATATGACCACTCCTCAGTTTAAAGAAATGTATGGTTCAGATTTCATACTTTCGGAATCAGTGAGTCGATGCGCAAAAGCGATCTTCAGAGGTATTGGTAGAGGAGAGGCATACGTCATAGAGCCATCTTGGATAAAATGGATCTTTTTGATAAAAAATGTTTGTCCTGAGATCGTTGACTACTTACTCGACTATATATTTGTTAGTTATCTAAAACCTTATTTCAAGCGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

308

Amino Acids

34.68

Weight (kDa)

7.68

Isoelectric Point (pI)

26.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 47 - 145 2.6e-24 short chain dehydrogenase
KR PF08659 49 - 157 1.2e-09 KR domain
adh_short_C2 PF13561 53 - 147 4.1e-16 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008986)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47350 AT3G47350 AT3G47350 AT3G47360 AT5G50590 AT5G50590 AT5G50690 AT5G50690
fragaria_vesca FvH4_5g08710
malus_domestica MD14G1152900.v1.1
prunus_persica Prupe.5G148000_v2.0.a1
pyrus_communis pycom14g12740
rosa_chinensis RchiOBHm_Chr7g0189561
rosa_laevigata RLG00000004600
rosa_multiflora Rmu_sc0001924.1_g000013
rosa_roxburghii Rroxscaffold_3G00265300
rosa_rugosa Rorug06G0499000
rosa_samantha Rh7AG104000 Rh7BG106700 Rh7CG108800 Rh7DG106100
rosa_wichuraiana Rw7G008980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 763
AciI CCGC 1 cut(s) 575
AclI AACGTT 1 cut(s) 129
AclWI GGATC 3 cut(s) 249, 289, 839
AcsI RAATTY 2 cut(s) 435, 614
AcuI CTGAAG 1 cut(s) 760
AfaI GTAC 3 cut(s) 197, 402, 485
AflII CTTAAG 1 cut(s) 107
AgsI TTSAA 4 cut(s) 125, 440, 623, 916
AjiI CACGTC 1 cut(s) 272
AjnI CCWGG 1 cut(s) 304
AluBI AGCT 3 cut(s) 161, 221, 605
AluI AGCT 3 cut(s) 161, 221, 605
AlwI GGATC 3 cut(s) 249, 289, 839
ApeKI GCWGC 1 cut(s) 602
ApoI RAATTY 2 cut(s) 435, 614
ArsI GACNNNNNNTTYG 2 cut(s) 872, 904
Asp700I GAANNNNTTC 1 cut(s) 354
AspLEI GCGC 1 cut(s) 764
AspS9I GGNCC 1 cut(s) 376
AsuC2I CCSGG 1 cut(s) 675
AsuHPI GGTGA 2 cut(s) 145, 320
AsuII TTCGAA 2 cut(s) 420, 514
AvaII GGWCC 1 cut(s) 376
BanII GRGCYC 1 cut(s) 479
BbvI GCAGC 1 cut(s) 614
BccI CCATC 1 cut(s) 823
BceAI ACGGC 1 cut(s) 570
BciT130I CCWGG 1 cut(s) 306
BclI TGATCA 1 cut(s) 384
BcnI CCSGG 1 cut(s) 675
BfaI CTAG 1 cut(s) 248
BfrI CTTAAG 1 cut(s) 107
BisI GCNGC 2 cut(s) 576, 603
BlsI GCNGC 2 cut(s) 577, 604
Bme1390I CCNGG 2 cut(s) 306, 675
Bme18I GGWCC 1 cut(s) 376
BmgBI CACGTC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 376
BmrFI CCNGG 2 cut(s) 306, 675
BmrI ACTGGG 1 cut(s) 144
BmsI GCATC 2 cut(s) 180, 749
BmuI ACTGGG 1 cut(s) 144
BpmI CTGGAG 1 cut(s) 417
Bpu14I TTCGAA 2 cut(s) 420, 514
BpuMI CCSGG 1 cut(s) 675
BsaBI GATNNNNATC 1 cut(s) 682
BsaWI WCCGGW 1 cut(s) 155
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bse1I ACTGG 2 cut(s) 139, 378
Bse8I GATNNNNATC 1 cut(s) 682
BseBI CCWGG 1 cut(s) 306
BseJI GATNNNNATC 1 cut(s) 682
BseMII CTCAG 2 cut(s) 719, 849
BseNI ACTGG 2 cut(s) 139, 378
BseRI GAGGAG 3 cut(s) 30, 693, 807
BseXI GCAGC 1 cut(s) 614
BsiSI CCGG 3 cut(s) 156, 168, 675
BslFI GGGAC 1 cut(s) 630
BsmFI GGGAC 1 cut(s) 630
Bsp119I TTCGAA 2 cut(s) 420, 514
Bsp1286I GDGCHC 1 cut(s) 479
Bsp143I GATC 7 cut(s) 241, 281, 384, 639, 771, 831, 861
BspACI CCGC 1 cut(s) 575
BspCNI CTCAG 2 cut(s) 718, 850
BspPI GGATC 3 cut(s) 249, 289, 839
BspQI GCTCTTC 1 cut(s) 675
BspT104I TTCGAA 2 cut(s) 420, 514
BspTI CTTAAG 1 cut(s) 107
BsrI ACTGG 2 cut(s) 139, 378
BssMI GATC 7 cut(s) 241, 281, 384, 639, 771, 831, 861
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 1 cut(s) 412
Bst6I CTCTTC 1 cut(s) 675
BstAFI CTTAAG 1 cut(s) 107
BstBI TTCGAA 2 cut(s) 420, 514
BstC8I GCNNGC 3 cut(s) 573, 580, 595
BstDEI CTNAG 2 cut(s) 705, 858
BstHHI GCGC 1 cut(s) 764
BstKTI GATC 7 cut(s) 244, 284, 387, 642, 774, 834, 864
BstMBI GATC 7 cut(s) 241, 281, 384, 639, 771, 831, 861
BstMWI GCNNNNNNNGC 3 cut(s) 218, 227, 599
BstNI CCWGG 1 cut(s) 306
BstNSI RCATGY 1 cut(s) 185
BstSCI CCNGG 2 cut(s) 304, 673
BstV1I GCAGC 1 cut(s) 614
BstX2I RGATCY 2 cut(s) 281, 831
BstYI RGATCY 2 cut(s) 281, 831
BtgZI GCGATG 1 cut(s) 303
BtrI CACGTC 1 cut(s) 272
BtsIMutI CAGTG 1 cut(s) 756
Cac8I GCNNGC 3 cut(s) 573, 580, 595
CfoI GCGC 1 cut(s) 764
Cfr13I GGNCC 1 cut(s) 376
CseI GACGC 2 cut(s) 452, 571
CsiI ACCWGGT 1 cut(s) 304
Csp6I GTAC 3 cut(s) 196, 401, 484
CviAII CATG 1 cut(s) 182
CviJI RGCY 5 cut(s) 161, 221, 477, 605, 814
CviKI_1 RGCY 5 cut(s) 161, 221, 477, 605, 814
CviQI GTAC 3 cut(s) 196, 401, 484
DdeI CTNAG 2 cut(s) 705, 858
DpnI GATC 7 cut(s) 243, 283, 386, 641, 773, 833, 863
DpnII GATC 7 cut(s) 241, 281, 384, 639, 771, 831, 861
DraI TTTAAA 1 cut(s) 712
Eam1104I CTCTTC 1 cut(s) 675
EarI CTCTTC 1 cut(s) 675
Eco24I GRGCYC 1 cut(s) 479
Eco32I GATATC 2 cut(s) 463, 652
Eco47I GGWCC 1 cut(s) 376
Eco57I CTGAAG 1 cut(s) 760
EcoRII CCWGG 1 cut(s) 304
EcoRV GATATC 2 cut(s) 463, 652
EcoT38I GRGCYC 1 cut(s) 479
FaeI CATG 1 cut(s) 185
FaqI GGGAC 1 cut(s) 630
FatI CATG 1 cut(s) 181
FbaI TGATCA 1 cut(s) 384
Fnu4HI GCNGC 2 cut(s) 576, 603
FriOI GRGCYC 1 cut(s) 479
Fsp4HI GCNGC 2 cut(s) 576, 603
FspBI CTAG 1 cut(s) 248
FspI TGCGCA 1 cut(s) 763
GlaI GCGC 1 cut(s) 763
GluI GCNGC 2 cut(s) 576, 603
GsuI CTGGAG 1 cut(s) 417
HapII CCGG 3 cut(s) 156, 168, 675
HgaI GACGC 2 cut(s) 452, 571
HhaI GCGC 1 cut(s) 764
Hin1II CATG 1 cut(s) 185
Hin6I GCGC 1 cut(s) 762
HinP1I GCGC 1 cut(s) 762
HincII GTYRAC 1 cut(s) 868
HindII GTYRAC 1 cut(s) 868
HinfI GANTC 3 cut(s) 355, 746, 754
HpaII CCGG 3 cut(s) 156, 168, 675
HphI GGTGA 2 cut(s) 145, 320
Hpy166II GTNNAC 1 cut(s) 868
Hpy188I TCNGA 5 cut(s) 176, 368, 730, 745, 779
Hpy188III TCNNGA 4 cut(s) 248, 440, 647, 857
Hpy8I GTNNAC 1 cut(s) 868
Hpy99I CGWCG 1 cut(s) 350
HpyAV CCTTC 1 cut(s) 125
HpyCH4III ACNGT 1 cut(s) 412
HpyCH4IV ACGT 4 cut(s) 129, 271, 482, 804
HpyCH4V TGCA 2 cut(s) 333, 571
HpyF10VI GCNNNNNNNGC 3 cut(s) 218, 227, 599
HpyF3I CTNAG 2 cut(s) 705, 858
HpySE526I ACGT 4 cut(s) 129, 271, 482, 804
Hsp92II CATG 1 cut(s) 185
HspAI GCGC 1 cut(s) 762
Ksp22I TGATCA 1 cut(s) 384
Kzo9I GATC 7 cut(s) 241, 281, 384, 639, 771, 831, 861
LguI GCTCTTC 1 cut(s) 675
LmnI GCTCC 2 cut(s) 158, 209
Lsp1109I GCAGC 1 cut(s) 614
LweI GCATC 2 cut(s) 180, 749
MabI ACCWGGT 1 cut(s) 304
MaeI CTAG 1 cut(s) 248
MaeII ACGT 4 cut(s) 129, 271, 482, 804
MaeIII GTNAC 1 cut(s) 130
MalI GATC 7 cut(s) 243, 283, 386, 641, 773, 833, 863
MboI GATC 7 cut(s) 241, 281, 384, 639, 771, 831, 861
MboII GAAGA 8 cut(s) 23, 26, 246, 434, 503, 537, 662, 766
MflI RGATCY 2 cut(s) 281, 831
MhlI GDGCHC 1 cut(s) 479
MluCI AATT 8 cut(s) 25, 215, 275, 435, 448, 531, 558, 614
MlyI GAGTC 1 cut(s) 763
MroXI GAANNNNTTC 1 cut(s) 354
MseI TTAA 3 cut(s) 108, 629, 711
MspCI CTTAAG 1 cut(s) 107
MspI CCGG 3 cut(s) 156, 168, 675
MspR9I CCNGG 2 cut(s) 306, 675
MvaI CCWGG 1 cut(s) 306
MwoI GCNNNNNNNGC 3 cut(s) 218, 227, 599
NciI CCSGG 1 cut(s) 675
NdeII GATC 7 cut(s) 241, 281, 384, 639, 771, 831, 861
NlaIII CATG 1 cut(s) 185
NsbI TGCGCA 1 cut(s) 763
NspI RCATGY 1 cut(s) 185
NspV TTCGAA 2 cut(s) 420, 514
PciSI GCTCTTC 1 cut(s) 675
PdmI GAANNNNTTC 1 cut(s) 354
PfeI GAWTC 2 cut(s) 355, 746
PfoI TCCNGGA 1 cut(s) 673
PkrI GCNGC 2 cut(s) 577, 604
PleI GAGTC 1 cut(s) 762
PpsI GAGTC 1 cut(s) 762
Psp1406I AACGTT 1 cut(s) 129
Psp6I CCWGG 1 cut(s) 304
PspGI CCWGG 1 cut(s) 304
PspPI GGNCC 1 cut(s) 376
PsuI RGATCY 2 cut(s) 281, 831
RsaI GTAC 3 cut(s) 197, 402, 485
RsaNI GTAC 3 cut(s) 196, 401, 484
SapI GCTCTTC 1 cut(s) 675
SaqAI TTAA 3 cut(s) 108, 629, 711
SatI GCNGC 2 cut(s) 576, 603
Sau3AI GATC 7 cut(s) 241, 281, 384, 639, 771, 831, 861
Sau96I GGNCC 1 cut(s) 376
SchI GAGTC 1 cut(s) 763
ScrFI CCNGG 2 cut(s) 306, 675
SduI GDGCHC 1 cut(s) 479
SexAI ACCWGGT 1 cut(s) 304
SfaNI GCATC 2 cut(s) 180, 749
SfuI TTCGAA 2 cut(s) 420, 514
SinI GGWCC 1 cut(s) 376
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 8 cut(s) 25, 215, 275, 435, 448, 531, 558, 614
SsiI CCGC 1 cut(s) 575
SspMI CTAG 1 cut(s) 248
StyD4I CCNGG 2 cut(s) 304, 673
TaaI ACNGT 1 cut(s) 412
TaiI ACGT 4 cut(s) 132, 274, 485, 807
TaqI TCGA 6 cut(s) 232, 345, 420, 514, 757, 879
TasI AATT 8 cut(s) 25, 215, 275, 435, 448, 531, 558, 614
TauI GCSGC 1 cut(s) 578
TfiI GAWTC 2 cut(s) 355, 746
Tru1I TTAA 3 cut(s) 108, 629, 711
Tru9I TTAA 3 cut(s) 108, 629, 711
TscAI CASTG 1 cut(s) 756
TseI GCWGC 1 cut(s) 602
TspDTI ATGAA 3 cut(s) 331, 347, 724
TspGWI ACGGA 1 cut(s) 704
TspRI CASTG 1 cut(s) 756
Vha464I CTTAAG 1 cut(s) 107
VpaK11BI GGWCC 1 cut(s) 376
XapI RAATTY 2 cut(s) 435, 614
XbaI TCTAGA 1 cut(s) 247
XceI RCATGY 1 cut(s) 185
XmnI GAANNNNTTC 1 cut(s) 354
XspI CTAG 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.